| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,364,366 | G→A | 57.4% | intergenic (+106/‑107) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,364,366 | 0 | G | A | 57.4% | 150.8 / inf | 336 | intergenic (+106/‑107) | pspE/ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| Reads supporting (aligned to +/- strand): ref base G (55/86); new base A (67/124); total (125/211) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
Only 100 of 345 total aligned reads displayed.
CCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATCTACGGT > CP009273/1364217‑1364514 | ccGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTg < 1:3023889/150‑1 (MQ=255) cGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTgg < 1:4786329/150‑1 (MQ=255) cGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTgg < 1:592632/150‑1 (MQ=255) gTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTATTTCACACCATATTTAAAAACCCATAGATTATTTTCGGAAGCGCACAAATAAGC‑ATTTTACCAGGTa > 1:3345205/1‑150 (MQ=255) ccTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCAAACCTTATTTAAATCCCCATAGATTATTTGCGGCAGCTCACAAAAACGC‑TTTTTACCGGGTaaaaa > 2:1106413/1‑150 (MQ=255) tGAAAGACATCGCAATGCCGATGGTCAACGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATg < 2:3288115/150‑1 (MQ=255) tGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAAt < 2:4406419/150‑1 (MQ=255) tGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TGTTTTTTTATGTGACACCATATTTACAAACCCAAAGATTATTTGCGTCAGCGCACCAATAAGC‑ATTTTGCCGAGTaaaaaaa > 1:1193508/1‑149 (MQ=255) aaaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTGTGTCACACCATATTTACAACCCCAAAGATTATTTTCGTCAGCTCACAAATAAGC‑ATTTTACCAAGTAAAAAATGa > 1:293325/1‑150 (MQ=255) aaaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGa < 1:1063887/150‑1 (MQ=255) gACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGAttt < 2:3382749/150‑1 (MQ=255) aCATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTATGTGACACCATATTTAAATACCCAGCGATTATTTGCGTCACCGCACAAATACCC‑ATTTTCCCGCGTAAAAAATGAtttg > 2:1956163/1‑149 (MQ=255) tCGCAATGCCGAATGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATTCGC‑TTTTTCCCTGGTAAAAAATGATTTCCTg < 1:2877607/150‑1 (MQ=255) tCGAAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTg < 1:345167/150‑1 (MQ=255) gCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCg < 1:5251192/150‑1 (MQ=255) cAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGt < 1:3232234/150‑1 (MQ=255) gAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCATATTTACATACCCATAGATTATTTGCGTCAGCTCACAAATACCC‑ATTTTACCTAGTAAAAAATGATTTCCAGCGTGACTaaa > 2:1223072/1‑150 (MQ=255) aaGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCGTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTTAAAAATGTTTTCCAGCGTGAATaaaa > 2:845429/1‑150 (MQ=255) aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTATGTGACACCGTTTTTAAAACCCCCAAGAATATTTTAGTCACCTCACAAATAAGC‑ATTTTACCGAGTAAAAAATTTTTTACAGCGGGACTaaaaa > 1:4392567/1‑149 (MQ=255) ggTCAAAGGTTAAAAGAATTCACCATGCGCGGCGCTTATGCGCCGTTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAAc < 1:1538240/150‑1 (MQ=255) tCAAAGGTTAACAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCAGAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCt < 2:3604784/150‑1 (MQ=255) aaaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTTTGTGAAACCATATTTAAAAACCCCAAGATTATTTTTGTAAGATAACAAAAAACC‑ATTTTTACGAGTAAAAAATGTTTTACTGCGTGAATaaaaaacaag > 1:5175706/1‑144 (MQ=255) aGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTTTTTCACACCCAATTTAAAAACCCCAAGATTAATTGAGTCAGCGAACAAAAAAACATTTTACCATGTTAAAAAAT‑ATTTACATCGTGAAAAAAAcacagttg > 1:1673961/1‑143 (MQ=255) aGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTATTTAAAACCATAATTAAAAACCCCAAGAATATTTTCGTCAGCGCACAAAAAAGC‑ATTTTACCGAGTAAAAAAAAATTTAAAGAGTGACAAAAAaccaagtg > 1:4334431/1‑145 (MQ=255) gTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCt < 2:320411/150‑1 (MQ=255) gTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCt < 2:2988621/150‑1 (MQ=255) tAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTGATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAATATGATTTCCTGCGTGACTAAAACCCTTGTGCTCa < 1:3110086/150‑1 (MQ=255) aaaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCaa < 2:1505093/150‑1 (MQ=255) aaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAt < 1:3551490/150‑1 (MQ=255) aaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAtt < 2:424750/150‑1 (MQ=255) aaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAtt < 2:7267/150‑1 (MQ=255) aaTTCACCATGAGCGGCGCTTATGCGCCG‑ATTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGAc < 1:5049447/150‑1 (MQ=255) aTTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACa < 1:3858033/150‑1 (MQ=255) ttCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAg < 1:853715/150‑1 (MQ=255) cATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAt < 2:1004280/150‑1 (MQ=255) aTGAGCGGCGCTTATGCGCCG‑TTTTTTTTTATTTGACACCATAATTAAAAACCCAAAGAATAATTTCGTCAGCTCACAAAAACGC‑ATTTTACCAAGTAAAAAAATATTTACAGCGTGTCAAAAAACCAATTGCTAAAATTACAGTTTAtt > 2:1435928/1‑150 (MQ=255) aTGAGCGGCGCTTATGCGCCG‑TTTTTTTTTATGTCACACCCTATTTAAAAACCCCAAGAATATTTTCGTCAGCTCACAAAAAAGC‑ATTTTACCCGGTAAAAAATTAATTACAGAGGGTCTAAAAAACAAGTGGTCAAATGAGAGTTTAtt > 2:5136561/1‑150 (MQ=255) tGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAttt < 2:1151952/150‑1 (MQ=255) tGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAttt < 2:4143411/150‑1 (MQ=255) gAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCATATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtttt < 2:184602/150‑1 (MQ=255) aGCGGCGCTTATGCGCCGTTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtttt < 2:2677854/150‑1 (MQ=255) gcggcgCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCt < 2:1790847/150‑1 (MQ=255) cTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGag < 1:15030/150‑1 (MQ=255) ttATGCGCCG‑TTTTTTTTTATGTAACACCATATTTAAATACCCAAATAATATTTGAGTCATCTCACAAAAAAGC‑ATTTTAACTGGTAAAAAAATATTTAAATCGTGACAAAAAACCATTTGGGCAAAATACAGTTTATTTTATGGGGagt > 2:2430577/1‑150 (MQ=255) tATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagta < 1:1850256/150‑1 (MQ=255) tGCGCCG‑ATTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagtagt < 2:2217403/150‑1 (MQ=255) gcgcCGTTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagtagt < 1:393429/150‑1 (MQ=255) gcCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGtctc < 2:4582574/150‑1 (MQ=255) cG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGtctctc > 1:1940624/1‑150 (MQ=255) g‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCg > 2:1377344/1‑150 (MQ=255) cgattttttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGtctctc < 2:1671125/147‑1 (MQ=255) ttttttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGtt < 1:3310999/150‑1 (MQ=255) ttttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTc < 2:2539999/150‑1 (MQ=255) ttttttCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTc < 2:5081946/150‑1 (MQ=255) tCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATggg < 1:2581275/150‑1 (MQ=255) tCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATggg < 2:2331338/150‑1 (MQ=255) tGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGAc < 1:2795437/150‑1 (MQ=255) cacCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTa > 2:4714329/1‑150 (MQ=255) acCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTAc < 1:4831494/150‑1 (MQ=255) ccTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTAcc > 2:4925721/1‑150 (MQ=255) ccTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTAcc > 2:885498/1‑150 (MQ=255) ccTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTAcc > 2:1584240/1‑150 (MQ=255) ttATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCAc < 1:2094874/150‑1 (MQ=255) tttACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGa < 1:1631912/150‑1 (MQ=255) ttACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGaa < 1:3988387/150‑1 (MQ=255) ttACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGaa < 2:614997/150‑1 (MQ=255) ttACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGaa < 2:128314/150‑1 (MQ=255) aCATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAg < 2:2794066/150‑1 (MQ=255) cATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAgg < 2:4334431/150‑1 (MQ=255) tCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCa > 1:4136760/1‑150 (MQ=255) cccATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAAc > 1:1985757/1‑150 (MQ=255) ccATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACa < 1:1223072/150‑1 (MQ=255) cATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACAt < 1:158551/150‑1 (MQ=255) cATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACAt > 2:2004582/1‑150 (MQ=255) cATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACAt > 2:3348192/1‑150 (MQ=255) aTAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAACGGCAACATg > 2:4051490/1‑150 (MQ=255) aGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGaa < 2:5018005/150‑1 (MQ=255) aGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGaa < 2:5221856/150‑1 (MQ=255) aGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGaa > 1:1715805/1‑150 (MQ=255) aGATAATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGAATTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATATTCTGCGGAGTAGACTCACGTTACATGTGACCGCTACCACGGAAAGGCAACATGaa > 2:4893060/1‑150 (MQ=255) attTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGa < 1:905240/150‑1 (MQ=255) ttGCGTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGaaa > 2:2107781/1‑150 (MQ=255) tGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGaaaa > 1:1121946/1‑150 (MQ=255) tGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGaaaa < 1:1055135/150‑1 (MQ=255) gTCAGCTCACAACTACGC‑TTTTTCCCTAGTAACAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTa < 2:3514262/150‑1 (MQ=255) gTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTa > 1:2648510/1‑150 (MQ=255) gTCAGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTa < 2:3001237/150‑1 (MQ=255) aGCTCACAAATACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACgg < 2:293325/150‑1 (MQ=255) aaaTACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCt < 1:4969972/150‑1 (MQ=255) aaTACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCACCATGAAACAGAAAATTACGGATTACCTg > 2:3442212/1‑150 (MQ=255) aTACGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTgg < 1:4233697/150‑1 (MQ=255) tACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGa < 1:2290983/150‑1 (MQ=255) aCGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGAc > 2:3825197/1‑150 (MQ=255) cGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACg > 2:2346657/1‑150 (MQ=255) cGC‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACg < 2:528030/150‑1 (MQ=255) c‑TTTTTCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGaa > 1:556682/1‑150 (MQ=255) ttttCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAAt < 1:2430577/150‑1 (MQ=255) ttttCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAAt < 2:1940573/150‑1 (MQ=255) tttCCCTAGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATc > 2:1050695/1‑150 (MQ=255) ttCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATCt > 1:4873551/1‑150 (MQ=255) | CCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGC‑TTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTAGTCTCTCGTTTCATGGGACCGCTACCACGGAAAGGCAACATGAAACAGAAAATTACGGATTACCTGGACGAAATCTACGGT > CP009273/1364217‑1364514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |