Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,672,692 T→A 7.8% L3L (CTT→CTA ydgH → DUF1471 family periplasmic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,672,6920TA 7.8% 1048.0 / 57.2 345L3L (CTT→CTAydgHDUF1471 family periplasmic protein
Reads supporting (aligned to +/- strand):  ref base T (182/136);  new base A (12/15);  total (194/151)
Fisher's exact test for biased strand distribution p-value = 2.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01

Only 100 of 351 total aligned reads displayed.

TGAGCAGGATTAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAATGCTATTGGCGAAGCGGT  >  CP009273/1672543‑1672841
                                                                                                                                                     |                                                                                                                                                     
tGAGCAGGATTAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCtt                                                                                                                                                       <  1:1372238/150‑1 (MQ=255)
tGAGCAGGATTAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCtt                                                                                                                                                       <  2:4969326/150‑1 (MQ=255)
tGAGCAGGATTAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCtt                                                                                                                                                       >  1:1843463/1‑150 (MQ=255)
   gCAGGATTAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAg                                                                                                                                                    <  1:1297511/150‑1 (MQ=255)
   gCAGGATTAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCAACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAg                                                                                                                                                    <  2:4320064/150‑1 (MQ=255)
    cAGTATTAAAATTGGCTTTAGGTTTGTGATATGAAAAATGACGCAGACAGTTACACCGTTTATATGCAATAATCAGACACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGa                                                                                                                                                   <  1:2360549/150‑1 (MQ=255)
          tAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACAccc                                                                                                                                             <  2:204614/150‑1 (MQ=255)
           aaaaTTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACcct                                                                                                                                            >  2:2964438/1‑150 (MQ=255)
            aaaTTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTAAAGAACACcctc                                                                                                                                           <  1:300296/150‑1 (MQ=255)
             aaTTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACcctcc                                                                                                                                          >  2:3646034/1‑150 (MQ=255)
              aTTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTAAAGAACACcctcct                                                                                                                                         <  1:3942122/150‑1 (MQ=255)
               ttGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTAAAGAACACCCTCCTg                                                                                                                                        <  1:3464285/150‑1 (MQ=255)
                tGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTgg                                                                                                                                       >  1:568632/1‑150 (MQ=255)
                  gCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTAAAGAACACCCTCCTGGCg                                                                                                                                     >  2:4495516/1‑150 (MQ=255)
                    ttAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTc                                                                                                                                   <  1:58817/150‑1 (MQ=255)
                     tAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCg                                                                                                                                  >  2:1846987/1‑150 (MQ=255)
                      aaGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCgg                                                                                                                                 >  2:594907/1‑150 (MQ=255)
                       aGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGc                                                                                                                                >  1:2802074/1‑150 (MQ=255)
                        ggAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCa                                                                                                                               >  2:293083/1‑150 (MQ=255)
                          aaTGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACt                                                                                                                             >  1:4180900/1‑150 (MQ=255)
                          aaTGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACt                                                                                                                             >  2:5214567/1‑150 (MQ=255)
                          aaTGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACt                                                                                                                             <  2:2131509/150‑1 (MQ=255)
                               gATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCttt                                                                                                                        <  2:4777336/150‑1 (MQ=255)
                                atatGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTc                                                                                                                       <  1:1022019/150‑1 (MQ=255)
                                atatGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTc                                                                                                                       >  1:3986219/1‑150 (MQ=255)
                                atatGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTc                                                                                                                       >  2:4861543/1‑150 (MQ=255)
                                     aaaaaTGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTa                                                                                                                  >  2:1105471/1‑150 (MQ=255)
                                      aaaaTGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAGGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTAt                                                                                                                 >  1:2743602/1‑150 (MQ=255)
                                      aaaaTGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTAt                                                                                                                 >  1:2282038/1‑150 (MQ=255)
                                       aaaTGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATg                                                                                                                >  1:1858661/1‑150 (MQ=255)
                                         aTGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGc                                                                                                              <  1:987303/150‑1 (MQ=255)
                                         aTGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCATGGCGTCGGCACTGCTTTCTGCTATGGc                                                                                                              >  2:2868035/1‑150 (MQ=255)
                                         aTGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTAAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGc                                                                                                              >  1:5267097/1‑150 (MQ=255)
                                              gCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATtct                                                                                                         <  1:1197552/150‑1 (MQ=255)
                                               cAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATtctc                                                                                                        >  2:814746/1‑150 (MQ=255)
                                               cAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATtctc                                                                                                        >  1:2555895/1‑150 (MQ=255)
                                                aGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTcc                                                                                                       >  2:3825090/1‑150 (MQ=255)
                                                 gACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCg                                                                                                      >  1:2923593/1‑150 (MQ=255)
                                                   cAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGtt                                                                                                    >  2:3909025/1‑150 (MQ=255)
                                                    aGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTa                                                                                                   >  2:3170560/1‑150 (MQ=255)
                                                          acCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACgcag                                                                                             >  1:2419859/1‑150 (MQ=255)
                                                             gTTTAAATGTAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCaa                                                                                          >  2:667220/1‑150 (MQ=255)
                                                             gTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCaa                                                                                          >  1:5138224/1‑150 (MQ=255)
                                                              tttAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAAc                                                                                         <  1:2147670/150‑1 (MQ=255)
                                                                tAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAg                                                                                       <  2:2767332/150‑1 (MQ=255)
                                                                 aaaTGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGa                                                                                      >  1:1075385/1‑150 (MQ=255)
                                                                   aTGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAAc                                                                                    >  2:3508860/1‑150 (MQ=255)
                                                                    tGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACt                                                                                   <  1:4358/150‑1 (MQ=255)
                                                                      cAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGa                                                                                 >  1:1541274/1‑150 (MQ=255)
                                                                        ataatCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACTCCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGaca                                                                               <  1:3373101/150‑1 (MQ=255)
                                                                          aatCAGCCACGTTTCTCGTTAATAACAATACCAGTAACTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACAcc                                                                             <  1:4725661/150‑1 (MQ=255)
                                                                          aatCAGCCACGTGTCTCGTGAATAACAATACCAGGACCTGGTTTGCGCAAGGCGATGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACAcc                                                                             <  2:1177959/150‑1 (MQ=255)
                                                                              aGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAg                                                                         >  2:3337750/1‑150 (MQ=255)
                                                                               gCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGc                                                                        >  2:1722243/1‑150 (MQ=255)
                                                                                 cACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAATCTTAATAACACCCTACTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAAAGCAGCAACAGAACTGAAACCGGAGCaa                                                                      >  1:3285457/1‑150 (MQ=255)
                                                                                  aCGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAg                                                                     <  2:2182663/150‑1 (MQ=255)
                                                                                   cGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGc                                                                    >  1:1625132/1‑150 (MQ=255)
                                                                                   cGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGc                                                                    <  1:4858434/150‑1 (MQ=255)
                                                                                   cGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGAAGCAACAGAACTGACACCGGAGCAAGc                                                                    <  1:953130/150‑1 (MQ=255)
                                                                                           gTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCgg                                                            >  2:4389047/1‑150 (MQ=255)
                                                                                           gTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCgg                                                            >  1:2272856/1‑150 (MQ=255)
                                                                                             taataaCAATACCAGTACCTGGTTTGCGCACGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGtt                                                          <  1:5028349/150‑1 (MQ=255)
                                                                                             taataaCAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGtt                                                          <  1:3810982/150‑1 (MQ=255)
                                                                                              aataaCAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTa                                                         <  1:894575/150‑1 (MQ=255)
                                                                                               ataaCAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTAAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTaa                                                        >  2:4142393/1‑150 (MQ=255)
                                                                                                taaCAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTaaa                                                       >  1:121341/1‑150 (MQ=255)
                                                                                                  aCAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAAcc                                                     <  1:2955015/150‑1 (MQ=255)
                                                                                                   cAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTAAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCt                                                    <  2:5039816/150‑1 (MQ=255)
                                                                                                      tACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCtttt                                                 <  1:1696963/150‑1 (MQ=255)
                                                                                                          aGTACCTTGTTTTCGCAAGGCGAATGATTATTTTTATGAAGCTTAAGAAAACCATCCTGGAGTCGGCACTGATTTCTGCTATGTAATTCTCCGTTAACGCATCAACAGAACTTACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGaac                                             <  2:238519/150‑3 (MQ=255)
                                                                                                          aGTACCAGGTTTGCGCAAGGCGAAGGATTAAAAATATGAAGCTAAAGAACACCCTCCTGGCGACGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGAcc                                             >  2:2319528/1‑150 (MQ=255)
                                                                                                           gTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCg                                            >  1:3177446/1‑150 (MQ=255)
                                                                                                            tACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCgt                                           >  2:4743620/1‑150 (MQ=255)
                                                                                                              ccTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCgtgt                                         <  2:1405721/150‑1 (MQ=255)
                                                                                                                tGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAg                                       <  1:4564625/150‑1 (MQ=255)
                                                                                                                tGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAg                                       >  1:4818755/1‑150 (MQ=255)
                                                                                                                 ggTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTatt                                      >  2:2621463/1‑148 (MQ=255)
                                                                                                                     tGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGtt                                  <  2:1199036/150‑1 (MQ=255)
                                                                                                                           aGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGt                            >  1:3477223/1‑150 (MQ=255)
                                                                                                                              cGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGt                         >  1:3037948/1‑150 (MQ=255)
                                                                                                                              cGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGt                         >  2:4351633/1‑150 (MQ=255)
                                                                                                                               gAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGtt                        <  2:4110053/150‑1 (MQ=255)
                                                                                                                               gAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGtg                        >  2:2837405/1‑149 (MQ=255)
                                                                                                                                aaGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGtgt                       >  1:3641315/1‑148 (MQ=255)
                                                                                                                                   gATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGtgtgta                    >  1:4077696/1‑145 (MQ=255)
                                                                                                                                    attattTTTATGAAGCTTCAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAAt                   <  2:3723714/150‑1 (MQ=255)
                                                                                                                                    attattTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCCCTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAAt                   <  2:1295271/150‑1 (MQ=255)
                                                                                                                                    attattTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAAt                   <  1:1987788/150‑1 (MQ=255)
                                                                                                                                    attattTTTATGAAGCTAAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAAt                   >  1:2620981/1‑150 (MQ=255)
                                                                                                                                     ttattTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAATg                  <  1:4455026/150‑1 (MQ=255)
                                                                                                                                           ttATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTTATTCTAttt            >  2:1917801/1‑149 (MQ=255)
                                                                                                                                           ttATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAATGCTATTg            <  1:814746/150‑1 (MQ=255)
                                                                                                                                           ttATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAATGCTATTg            <  1:1757201/150‑1 (MQ=255)
                                                                                                                                           ttATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTGTTAATTGTATTg            >  2:4574126/1‑150 (MQ=255)
                                                                                                                                             aTGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTGTTTATTGTATTTGc          >  2:1978414/1‑150 (MQ=255)
                                                                                                                                             aTGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGATAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTGGTAATTCAATAGGc          >  1:2209357/1‑150 (MQ=255)
                                                                                                                                               gAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAATGCTATTGGCGa        <  1:2137836/150‑1 (MQ=255)
                                                                                                                                                 aGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTTTTTATATTTGCGAAg      >  1:4648995/1‑150 (MQ=255)
                                                                                                                                                  gCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAAATCTATTGGCGAAGc     >  1:3107835/1‑150 (MQ=255)
                                                                                                                                                   cTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTATTTCTAATGGGGAAGCg    >  1:431831/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGAGCAGGATTAAAATTGGCTTAAGGAATGTGATATGAAAAATGACGCAGACAGTTACACCGTTTAAATGCAATAATCAGCCACGTTTCTCGTTAATAACAATACCAGTACCTGGTTTGCGCAAGGCGAAGGATTATTTTTATGAAGCTTAAGAACACCCTCCTGGCGTCGGCACTGCTTTCTGCTATGGCATTCTCCGTTAACGCAGCAACAGAACTGACACCGGAGCAAGCGGCAGCGGTTAAACCTTTTGACCGTGTAGTGGTTACCGGTCGTTTTAATGCTATTGGCGAAGCGGT  >  CP009273/1672543‑1672841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: