Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,475,279 A→T 14.7% L126Q (CTG→CAG)  emrY ← putative multidrug efflux system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,475,2790AT14.7% 677.8 / 26.4 292L126Q (CTG→CAG) emrYputative multidrug efflux system
Reads supporting (aligned to +/- strand):  ref base A (162/66);  new base T (2/52);  total (164/128)
Fisher's exact test for biased strand distribution p-value = 3.70e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 295 total aligned reads displayed.

AAAATATCCAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCC  >  CP009273/2475130‑2475428
                                                                                                                                                     |                                                                                                                                                     
 aaaTATCCAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAg                                                                                                                                                      <  1:4234772/150‑1 (MQ=255)
 aaaTATCCAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAg                                                                                                                                                      <  2:5172802/150‑1 (MQ=255)
 aaaTATCCAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAg                                                                                                                                                      >  1:505008/1‑150 (MQ=255)
  aaTATCCAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGt                                                                                                                                                     <  1:3966669/150‑1 (MQ=255)
       ccAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAAt                                                                                                                                                >  2:4151603/1‑150 (MQ=255)
       ccAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAAt                                                                                                                                                >  2:4076800/1‑150 (MQ=255)
        cAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAAtt                                                                                                                                               <  1:2162423/150‑1 (MQ=255)
         aaCCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTa                                                                                                                                              >  2:1405697/1‑150 (MQ=255)
           ccccAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAc                                                                                                                                            <  1:1283500/150‑1 (MQ=255)
            cccAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACg                                                                                                                                           >  1:3154560/1‑150 (MQ=255)
             ccAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACgg                                                                                                                                          >  2:946781/1‑150 (MQ=255)
              cAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGc                                                                                                                                         >  1:3039156/1‑150 (MQ=255)
               aGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGcc                                                                                                                                        >  1:2613327/1‑150 (MQ=255)
               aGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGcc                                                                                                                                        >  1:2742970/1‑150 (MQ=255)
                     aGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCa                                                                                                                                  >  2:3951233/1‑150 (MQ=255)
                       ttATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCAtt                                                                                                                                <  1:821540/150‑1 (MQ=255)
                       ttATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCAtt                                                                                                                                >  1:2711857/1‑150 (MQ=255)
                        tATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATGATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTa                                                                                                                               >  2:1459557/1‑150 (MQ=255)
                         aTCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTaa                                                                                                                              >  2:770703/1‑150 (MQ=255)
                           cacaAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAAcc                                                                                                                            >  1:1318212/1‑150 (MQ=255)
                             caAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAAcccc                                                                                                                          <  2:845186/150‑1 (MQ=255)
                             caAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAAcccc                                                                                                                          >  1:3258870/1‑150 (MQ=255)
                             caAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGACAGAGCAAATGTTCTTTTTTCTGGCTGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATAAACGGCCCCTCCATTAAcacc                                                                                                                          >  1:3609409/1‑150 (MQ=255)
                              aaaTATAACCGCCCAATCTCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCt                                                                                                                         <  1:3063993/150‑1 (MQ=255)
                              aaaTATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACTGTGGAATTAACGGCCCCGCCATTAACCCCt                                                                                                                         >  2:4419369/1‑150 (MQ=255)
                              aaaTATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCt                                                                                                                         <  2:1764395/150‑1 (MQ=255)
                                  ataACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAAc                                                                                                                     >  1:1021415/1‑150 (MQ=255)
                                      ccGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGTCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACACCTGAACGaat                                                                                                                 >  1:3737522/1‑148 (MQ=255)
                                      ccGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGAct                                                                                                                 >  1:3908828/1‑150 (MQ=255)
                                       cGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGActc                                                                                                                <  2:2654125/150‑1 (MQ=255)
                                             atatCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTaaaaa                                                                                                          >  1:2170941/1‑150 (MQ=255)
                                               atCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAat                                                                                                        >  1:952882/1‑150 (MQ=255)
                                               atCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAat                                                                                                        >  1:2613008/1‑150 (MQ=255)
                                                 cGGCCCACTTTTCGTAGCGATAATCACGGTCATTGACAATAATGCCTGAGAAATTGTTATTTTTTCGGGCGGATATTTCCTTATTAATAAACTCTGTGACAGTGGATTTAAGGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAatat                                                                                                      <  2:3907797/150‑1 (MQ=255)
                                                      cacaTATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGca                                                                                                 >  2:3238889/1‑150 (MQ=255)
                                                        caTATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGcaca                                                                                               >  2:2889163/1‑150 (MQ=255)
                                                         atatGGGAGCTATAAACACGGTAATTGACAATAATCCCATAGAAATTGTTATTTTTTCTGGCGTATAATTCCTAAATAATAAACCCTGTTACAGTGTATTTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACAt                                                                                              <  2:1892878/150‑1 (MQ=255)
                                                         atatCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGAACAt                                                                                              >  2:3647586/1‑150 (MQ=255)
                                                         atatCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTATGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAAAATCAGAACAt                                                                                              >  1:2846215/1‑150 (MQ=255)
                                                             cGGAGCTATAATCACGTTAATTGACAATAATGCCATATAAATTGTTATTTTTTCTGGCGTATAATTCATTAATAATAAACTTTTTTACTTTGTATTTAACGGCCCCGCAATTAACCCCTTAACGACTCTAAAAAATATCAGCACATCAAg                                                                                          <  2:1515045/150‑1 (MQ=255)
                                                             cGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAg                                                                                          >  1:4236875/1‑150 (MQ=255)
                                                             cGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAg                                                                                          >  1:1483626/1‑150 (MQ=255)
                                                              ggAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCaata                                                                                         >  2:4470907/1‑148 (MQ=255)
                                                                       aTCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGAt                                                                                >  1:2976835/1‑150 (MQ=255)
                                                                        tCACGGTCTTTGACAATAATGCCAGATCAATTTTTTTTTTTTCTGGCGGATATTTCCTTAATATTAAACTCTGTTACTGTGTAATTAACGGCCCCGCAATTAACCCCTCCACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATa                                                                               <  2:1149611/150‑1 (MQ=255)
                                                                        tCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATa                                                                               >  2:4766466/1‑150 (MQ=255)
                                                                          aCGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGTATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAgg                                                                             <  2:3102311/150‑1 (MQ=255)
                                                                             tacATTGACAATATTGCCAGATAAATTGTTATTTTTTTTGGGGGATATTTCTTTATTAATAAAATCTGTGAATGTGTAATTAAGGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTa                                                                          <  1:3085809/148‑1 (MQ=255)
                                                                              tCATTGACAATACTGCCAGAGCAAATGTTCTTTTTTCTGGCGTATAATACATTAATAATAAACTCTGTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTac                                                                         <  1:3530416/150‑1 (MQ=255)
                                                                               cATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTaca                                                                        >  1:2204988/1‑150 (MQ=255)
                                                                                  tGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACAt                                                                     >  2:4358335/1‑150 (MQ=255)
                                                                                   gACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACAtt                                                                    >  2:2463065/1‑150 (MQ=255)
                                                                                   gACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACAtt                                                                    >  1:2070272/1‑150 (MQ=255)
                                                                                    aCCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTa                                                                   >  2:1325158/1‑150 (MQ=255)
                                                                                      cATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAAt                                                                 >  2:3363800/1‑150 (MQ=255)
                                                                                        tAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGa                                                               >  2:2795542/1‑150 (MQ=255)
                                                                                             ccAGATAAAATGTTCTTTTTTCTGGGTTATATTACCTTAATAATAAACTCTGTTACATTTGAATTAACGGCCCCGCAATTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACa                                                          <  2:4282436/150‑1 (MQ=255)
                                                                                             ccAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACa                                                          >  2:3563291/1‑150 (MQ=255)
                                                                                              catataaaaTTTTCTTTTTTCTGGCGTATATTTCATTAATAATAAACTCTGTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAg                                                         <  1:3841363/144‑1 (MQ=255)
                                                                                              cAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAg                                                         >  1:694199/1‑150 (MQ=255)
                                                                                                  gCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGaa                                                     >  2:4061304/1‑150 (MQ=255)
                                                                                                   cAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTTGTCGATAGGCTACACATTAATGAAGACAGCGaaa                                                    >  2:4004580/1‑150 (MQ=255)
                                                                                                   aaattGTTATTTTTTCTGGCGTATAATACCTTAATAATAAACTCTGTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGaaa                                                    <  2:1709609/146‑1 (MQ=255)
                                                                                                    aaaTGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGaaaa                                                   >  1:4526397/1‑150 (MQ=255)
                                                                                                     atggTTCTTTTTTGTGGCTTATATTTCTTTAATAATAAACTCTGTTAACTTTTATTTAACGGCCCCGCAATTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGaaaaa                                                  <  2:4665486/147‑1 (MQ=255)
                                                                                                     aaTGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAATACAGCGaaaaa                                                  >  1:3500350/1‑150 (MQ=255)
                                                                                                        ttttttttttCGGGGGTATTATTCATTAATAAAAACCTGTGGTACTGGGTAATTACCGGCCCCCCAATTAACCCCGTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGaaaaaaaa                                               <  1:1051467/146‑1 (MQ=255)
                                                                                                           cTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCGGTGACTGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTg                                            <  2:3020155/150‑1 (MQ=255)
                                                                                                                   tGGCGTATAATTAATTAAAAATAAACTCTGTGACTGTGTAATAACCGGCCCCCCCATAAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAg                                    <  2:4900370/150‑1 (MQ=255)
                                                                                                                   tGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGCCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAg                                    <  2:1072961/150‑1 (MQ=255)
                                                                                                                    ggCGTATAATACATAAAAAATAAACTCTGTCCCTGTGGAATTAACGGCCCCGCAATTACCCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGt                                   <  1:2381750/150‑1 (MQ=255)
                                                                                                                      cttaTAATTCCTTAATAATAAACTCTGTGACAGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaa                                 <  2:1193112/147‑1 (MQ=255)
                                                                                                                         aTAATTCCTAAATAATAAACTCTGTGACTGTGTAATTAACGGCCCCGCCATTAACCCCTTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaaaaa                              <  2:1524902/150‑1 (MQ=255)
                                                                                                                          tatttCATTAATAAAAAACTGTTTTAATGTGTAATTAACGCCCCCGCAATTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAaat                             <  2:935459/147‑1 (MQ=255)
                                                                                                                          tAATTCATTAATAATAAACTCTGTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAaat                             <  2:2418551/150‑1 (MQ=255)
                                                                                                                           aaTACCTTAATAATAAACTCTTTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAaata                            <  1:3409116/150‑1 (MQ=255)
                                                                                                                             ttCTTTAATAATAAACTATTTTCAATTGTAATAAACGGCCCCCCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAaataat                          <  1:2500505/150‑1 (MQ=255)
                                                                                                                              tCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATc                         <  2:3411751/150‑1 (MQ=255)
                                                                                                                              tCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATc                         <  2:1264103/150‑1 (MQ=255)
                                                                                                                              tCCTAAATAATAAACACTGTTACAGTGTAATTAAGGGCCCCGCCATTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATc                         <  2:3292745/150‑1 (MQ=255)
                                                                                                                               cattAATACTAAACTCTGTGCCTGTGGTATTATGGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCt                        <  1:5142724/148‑1 (MQ=255)
                                                                                                                                attAATAATAACCTCTGTTAATTTGTATTTATCGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCtt                       <  2:3792219/149‑1 (MQ=255)
                                                                                                                                attAATAATAAACTCTGTGCCAGTGTATTTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCtt                       <  2:1021415/149‑1 (MQ=255)
                                                                                                                                  taataataaACTCTGTGACAGTGGAATTAACGGCCCTGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTaa                     >  2:4261367/1‑150 (MQ=255)
                                                                                                                                    ataataaCCTCTGTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAAtt                   <  2:2558310/150‑1 (MQ=255)
                                                                                                                                    ataataaACTCTGTGACTGTGTATTTAACGGCCCCGCAATTAACCCCTTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAAtt                   <  2:633850/150‑1 (MQ=255)
                                                                                                                                     taataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTc                  >  2:4727833/1‑150 (MQ=255)
                                                                                                                                     taataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTc                  >  1:4631546/1‑150 (MQ=255)
                                                                                                                                      aataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCAAAAAAATATCAGCAAAAAAAGATGGGTCGATAGGCTACACATAAAAGAAGACAGCGACACAAAAGAGACAGAAAGAAAAAAAAATCTTAATTCg                 >  1:5314183/1‑150 (MQ=255)
                                                                                                                                       ataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGc                >  2:295157/1‑150 (MQ=255)
                                                                                                                                       ataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGc                >  1:4186858/1‑150 (MQ=255)
                                                                                                                                         aaaCTTTTTTACTGTGTAATTAACGGCCCCGCATTTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCt              <  1:4441722/150‑1 (MQ=255)
                                                                                                                                          aaCTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTa             >  1:1338571/1‑150 (MQ=255)
                                                                                                                                           aCTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTAt            >  2:2188496/1‑150 (MQ=255)
                                                                                                                                               tgtgACAGTGTAATTAACGGCCCCGCAATTACCCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCtt        <  2:2787370/150‑1 (MQ=255)
                                                                                                                                                tttaCAGTGTAATTAACGGCCCCGCCATTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCttt       <  2:2079147/147‑1 (MQ=255)
                                                                                                                                                 tgACTGTGTAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTtg      <  1:1801318/150‑1 (MQ=255)
                                                                                                                                                 tgACAGGGTAATTACCGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTtg      <  2:5223734/150‑1 (MQ=255)
                                                                                                                                                     aGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGcc  >  2:4822433/1‑150 (MQ=255)
                                                                                                                                                     aGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGcc  >  1:4652542/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AAAATATCCAACCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCC  >  CP009273/2475130‑2475428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: