Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 652,866 Δ1 bp coding (119/210 nt) cspE → constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273652,8650G.98.9% 940.1 / 2.7 183coding (118/210 nt)cspEconstitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base . (96/85);  total (96/87)
Fisher's exact test for biased strand distribution p-value = 2.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 185 total aligned reads displayed.

TTGTGTCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCT  >  CP009273/652716‑653010
                                                                                                                                                     |                                                                                                                                                 
ttGTGTCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATg                                                                                                                                                   <  1:789451/150‑1 (MQ=255)
    gtCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTACTGtttt                                                                                                                                               <  2:234873/150‑1 (MQ=255)
      cTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTaa                                                                                                                                            >  1:2837137/1‑150 (MQ=255)
          ttttCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAAct                                                                                                                                        <  2:1853676/150‑1 (MQ=255)
             tCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCTAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCtt                                                                                                                                     <  2:3496464/150‑1 (MQ=255)
              cATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTg                                                                                                                                    <  2:2067157/150‑1 (MQ=255)
                tGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCt                                                                                                                                  >  1:527423/1‑150 (MQ=255)
                  tAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGa                                                                                                                                <  2:3801216/150‑1 (MQ=255)
                  tAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGa                                                                                                                                >  2:2700775/1‑150 (MQ=255)
                   aaaGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGaa                                                                                                                               >  2:2422282/1‑150 (MQ=255)
                    aaGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAg                                                                                                                              >  1:1345835/1‑150 (MQ=255)
                    aaGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAg                                                                                                                              >  2:3369857/1‑150 (MQ=255)
                     aGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAgg                                                                                                                             >  2:616034/1‑150 (MQ=255)
                       gTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTc                                                                                                                           <  1:2287453/150‑1 (MQ=255)
                       gTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTc                                                                                                                           <  1:2405604/150‑1 (MQ=255)
                        tAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCa                                                                                                                          >  1:2696254/1‑150 (MQ=255)
                        tAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCa                                                                                                                          >  2:1283534/1‑150 (MQ=255)
                            tttGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAgcgc                                                                                                                      >  2:2978085/1‑150 (MQ=255)
                             ttGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGcgcg                                                                                                                     >  1:1308471/1‑150 (MQ=255)
                             ttGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGcgcg                                                                                                                     >  1:3208821/1‑150 (MQ=255)
                                aTGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTag                                                                                                                  >  1:3245931/1‑150 (MQ=255)
                                 tGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTaga                                                                                                                 <  2:3307855/150‑1 (MQ=255)
                                  gTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTagag                                                                                                                <  2:965933/150‑1 (MQ=255)
                                  gTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTagag                                                                                                                >  2:1468949/1‑150 (MQ=255)
                                    cTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGtt                                                                                                              >  1:858815/1‑150 (MQ=255)
                                     tAAGATTAAAGTTAACGTTAAGTGGTTTAATGAGTCAAAAGGATTCGGTTTCATTACTCCGGTTGACGGCAGCAAAGACGTGTTCGTTAACTTCTCTGCAATACAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTc                                                                                                             <  1:311156/150‑1 (MQ=255)
                                     tAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTc                                                                                                             <  1:311109/150‑1 (MQ=255)
                                      aaGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCg                                                                                                            >  2:1101468/1‑150 (MQ=255)
                                         aTTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGaaa                                                                                                         >  2:2889646/1‑150 (MQ=255)
                                          ttAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAAt                                                                                                        <  2:1176242/150‑1 (MQ=255)
                                             aaGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCAc                                                                                                     >  2:2109712/1‑150 (MQ=255)
                                              aGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACt                                                                                                    <  1:2103984/150‑1 (MQ=255)
                                               ggTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTa                                                                                                   <  1:1130960/150‑1 (MQ=255)
                                                 tAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAAc                                                                                                 <  1:1544502/150‑1 (MQ=255)
                                                 tAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAAc                                                                                                 >  1:1640344/1‑150 (MQ=255)
                                                 tAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAAc                                                                                                 >  1:3620719/1‑150 (MQ=255)
                                                    cGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAATCTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGt                                                                                              >  2:2130860/1‑150 (MQ=255)
                                                      ttAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGc                                                                                            <  1:2873644/150‑1 (MQ=255)
                                                        aaGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCa                                                                                          <  1:2132649/150‑1 (MQ=255)
                                                          gTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCaaa                                                                                        >  1:2862030/1‑150 (MQ=255)
                                                            ggTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAgg                                                                                      <  2:629678/150‑1 (MQ=255)
                                                                  aTGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTc                                                                                <  1:3382714/150‑1 (MQ=255)
                                                                  aTGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTc                                                                                <  1:1248846/150‑1 (MQ=255)
                                                                   tGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTct                                                                               <  2:1796294/150‑1 (MQ=255)
                                                                     aGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTctgc                                                                             >  1:3154857/1‑150 (MQ=255)
                                                                         cAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCa                                                                         <  2:233677/150‑1 (MQ=255)
                                                                           aaGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCaaa                                                                       >  2:2283721/1‑150 (MQ=255)
                                                                            aGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAAc                                                                      <  2:1334234/150‑1 (MQ=255)
                                                                              gATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGt                                                                    >  2:3178642/1‑150 (MQ=255)
                                                                                   ggTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCg                                                               >  1:838732/1‑150 (MQ=255)
                                                                                   ggTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCg                                                               <  1:640641/150‑1 (MQ=255)
                                                                                     tttCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGct                                                             <  2:2490968/150‑1 (MQ=255)
                                                                                       tCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGctct                                                           >  1:188137/1‑150 (MQ=255)
                                                                                         aTTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGt                                                         >  2:1713447/1‑150 (MQ=255)
                                                                                          ttACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTa                                                        >  1:2827175/1‑150 (MQ=255)
                                                                                           tACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTaa                                                       <  2:2837137/150‑1 (MQ=255)
                                                                                            aCTCCGGAAGACGGCAGCGAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAg                                                      >  2:72450/1‑150 (MQ=255)
                                                                                            aCTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAg                                                      >  1:754849/1‑150 (MQ=255)
                                                                                                  gAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGt                                                >  1:2496085/1‑150 (MQ=255)
                                                                                                   aaGACGGCATCAAAGACGTGTTCGTACTCTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGATGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCTAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGtg                                               <  2:425720/150‑2 (MQ=255)
                                                                                                   aaGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTc                                               >  2:2152561/1‑150 (MQ=255)
                                                                                                   aaGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTc                                               <  1:2223999/150‑1 (MQ=255)
                                                                                                    aGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCa                                              >  2:777886/1‑150 (MQ=255)
                                                                                                     gACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAg                                             <  1:2011068/150‑1 (MQ=255)
                                                                                                     gACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGCTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTACTCGCTCTGTAAGATACGTCAg                                             >  2:2463004/1‑150 (MQ=255)
                                                                                                       cGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCCGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCa                                           >  1:1359037/1‑150 (MQ=255)
                                                                                                        ggCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCaa                                          <  1:2377319/150‑1 (MQ=255)
                                                                                                        ggCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCaa                                          >  2:1005435/1‑150 (MQ=255)
                                                                                                           agcaAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGaa                                       <  2:2963172/150‑1 (MQ=255)
                                                                                                           agcaAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGaa                                       >  1:1807276/1‑150 (MQ=255)
                                                                                                           agcaAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGaa                                       >  2:2584379/1‑150 (MQ=255)
                                                                                                            gcaAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAAt                                      <  2:3029160/150‑1 (MQ=255)
                                                                                                             caAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAAtt                                     >  2:548595/1‑150 (MQ=255)
                                                                                                              aaaGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAAtta                                    <  2:3041568/150‑2 (MQ=255)
                                                                                                              aaaGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTc                                    >  1:1338138/1‑150 (MQ=255)
                                                                                                              aaaGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTc                                    >  1:1600732/1‑150 (MQ=255)
                                                                                                               aaGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCa                                   >  2:3223468/1‑150 (MQ=255)
                                                                                                                 gACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCaaa                                 >  2:3754524/1‑150 (MQ=255)
                                                                                                                   cGTGTTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCaaacc                               >  2:2247817/1‑148 (MQ=255)
                                                                                                                    gtgtTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAAcc                              <  1:2681743/150‑1 (MQ=255)
                                                                                                                     tgtTCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAAccc                             <  2:1511520/150‑1 (MQ=255)
                                                                                                                        tCGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCt                          <  1:1476868/150‑1 (MQ=255)
                                                                                                                         cGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCtt                         <  1:3584209/150‑1 (MQ=255)
                                                                                                                         cGTACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCtt                         <  1:739875/150‑1 (MQ=255)
                                                                                                                           tACACTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTaa                       >  1:160528/1‑150 (MQ=255)
                                                                                                                            acacTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAAt                      <  1:2116179/150‑1 (MQ=255)
                                                                                                                            acacTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAAt                      >  2:1084529/1‑150 (MQ=255)
                                                                                                                             cacTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATc                     >  2:1246874/1‑150 (MQ=255)
                                                                                                                              acTTCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCa                    >  2:760651/1‑150 (MQ=255)
                                                                                                                                ttCTCTGCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc                  <  1:718747/150‑1 (MQ=255)
                                                                                                                                      gCAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttt            <  1:3369857/150‑1 (MQ=255)
                                                                                                                                       cAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt           >  1:3588388/1‑150 (MQ=255)
                                                                                                                                       cAATCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtttt           <  1:1283531/150‑1 (MQ=255)
                                                                                                                                        aaTCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttttt          >  1:1083355/1‑150 (MQ=255)
                                                                                                                                        aaTCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttttt          >  1:1854821/1‑150 (MQ=255)
                                                                                                                                         aTCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGATGCAAACATAATCGCTCTATAAGATACGTCAACAATAATTCAAAACCCAATTAATCAACAGGtttttt         >  1:498400/1‑150 (MQ=255)
                                                                                                                                          tCCAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGttttttt        <  2:527423/150‑1 (MQ=255)
                                                                                                                                            cAGACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTg      >  1:178631/1‑150 (MQ=255)
                                                                                                                                              gACTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGt    <  1:2953557/150‑1 (MQ=255)
                                                                                                                                               aCTAATGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTc   >  2:218418/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
TTGTGTCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCT  >  CP009273/652716‑653010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: