Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 3,945,181 G→T pseudogene (280/663 nt) ilvG → pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,945,1810GT100.0% 613.6 / NA 187pseudogene (280/663 nt)ilvGpseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (78/109);  total (78/109)

Only 100 of 187 total aligned reads displayed.

CAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAG  >  CP009273/3945035‑3945327
                                                                                                                                                  |                                                                                                                                                  
caGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTg                                                                                                                                                 <  2:3572332/150‑1 (MQ=255)
 aGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGt                                                                                                                                                >  2:318135/1‑150 (MQ=255)
   aTGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCt                                                                                                                                              <  2:1969910/150‑1 (MQ=255)
   aTGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCt                                                                                                                                              >  2:1233727/1‑150 (MQ=255)
   aTGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCt                                                                                                                                              <  2:3584706/150‑1 (MQ=255)
    tgtgGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTg                                                                                                                                             >  2:728671/1‑150 (MQ=255)
         ggCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTAtct                                                                                                                                        >  2:3461870/1‑150 (MQ=255)
         ggCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTAtct                                                                                                                                        <  1:3798772/150‑1 (MQ=255)
            agcaCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCg                                                                                                                                     <  2:117462/150‑1 (MQ=255)
             gcaCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCgg                                                                                                                                    >  2:593363/1‑150 (MQ=255)
              caCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGt                                                                                                                                   >  1:434807/1‑150 (MQ=255)
              caCCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGt                                                                                                                                   >  1:2407851/1‑150 (MQ=255)
                 cAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGAc                                                                                                                                <  2:3366467/150‑1 (MQ=255)
                  aGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACg                                                                                                                               <  1:2005283/150‑1 (MQ=255)
                  aGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACg                                                                                                                               <  1:1729304/150‑1 (MQ=255)
                  aGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACg                                                                                                                               <  1:533651/150‑1 (MQ=255)
                   gATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAAGTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACgg                                                                                                                              <  2:2449838/150‑1 (MQ=255)
                    aTGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGc                                                                                                                             <  1:1166926/150‑1 (MQ=255)
                         ggCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCttt                                                                                                                        <  2:1831737/150‑1 (MQ=255)
                          gCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTc                                                                                                                       <  2:3633557/150‑1 (MQ=255)
                          gCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTc                                                                                                                       <  2:3633613/150‑1 (MQ=255)
                          gCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTc                                                                                                                       <  1:2625177/150‑1 (MQ=255)
                            tGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCat                                                                                                                     >  2:2579479/1‑150 (MQ=255)
                             gcgcAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCatg                                                                                                                    <  1:3204472/150‑1 (MQ=255)
                                 agcaCATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTGGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCAtgatga                                                                                                                <  1:101598/150‑1 (MQ=255)
                                 agcaCATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCAtgatga                                                                                                                >  1:2763254/1‑150 (MQ=255)
                                  gcaCATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGaa                                                                                                               <  1:138583/150‑1 (MQ=255)
                                   cacaTCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAAt                                                                                                              <  2:3059300/150‑1 (MQ=255)
                                   cacaTCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAAt                                                                                                              <  1:1109206/150‑1 (MQ=255)
                                    acaTCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAAtg                                                                                                             >  1:3045486/1‑150 (MQ=255)
                                    acaTCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAAtg                                                                                                             >  1:2499705/1‑150 (MQ=255)
                                     caTCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAAtgt                                                                                                            <  2:1328030/150‑1 (MQ=255)
                                     caTCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAAtgt                                                                                                            <  2:15079/150‑1 (MQ=255)
                                       tCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGc                                                                                                          <  2:1894451/150‑1 (MQ=255)
                                            cacaCTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAagag                                                                                                     <  1:965336/150‑1 (MQ=255)
                                               acTCGCCCGGACAATTTCATCACCTCCAGCGGTTTAGGTCCCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATCCCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTg                                                                                                  >  2:2413206/1‑150 (MQ=255)
                                                cTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTgg                                                                                                 <  1:3399096/150‑1 (MQ=255)
                                                 tCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTggg                                                                                                >  1:1359093/1‑150 (MQ=255)
                                                     ccGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCAcc                                                                                            >  1:2275028/1‑150 (MQ=255)
                                                     ccGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCAcc                                                                                            <  2:1090223/150‑1 (MQ=255)
                                                      cGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCg                                                                                           >  1:3080646/1‑150 (MQ=255)
                                                        gAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTa                                                                                         <  1:893521/150‑1 (MQ=255)
                                                        gAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTa                                                                                         <  1:3459647/150‑1 (MQ=255)
                                                          aaaTTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTaaa                                                                                       >  2:2140744/1‑150 (MQ=255)
                                                          aaaTTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTaaa                                                                                       >  1:1494998/1‑150 (MQ=255)
                                                            aTTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAAc                                                                                     <  1:1069703/150‑1 (MQ=255)
                                                                 atcaCCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAg                                                                                <  1:386437/150‑1 (MQ=255)
                                                                 atcaCCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAg                                                                                <  2:3057639/150‑1 (MQ=255)
                                                                 atcaCCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAg                                                                                <  2:1233646/150‑1 (MQ=255)
                                                                   caCCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCa                                                                              <  2:526781/150‑1 (MQ=255)
                                                                            cGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGtt                                                                     >  2:760144/1‑150 (MQ=255)
                                                                             ggTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTg                                                                    >  2:260469/1‑150 (MQ=255)
                                                                             ggTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTg                                                                    >  2:3493559/1‑150 (MQ=255)
                                                                                  aGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAAt                                                               >  2:1584579/1‑150 (MQ=255)
                                                                                  aGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAAt                                                               <  2:370725/150‑1 (MQ=255)
                                                                                  aGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAAt                                                               >  1:1800010/1‑150 (MQ=255)
                                                                                       ccATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCt                                                          <  2:1394611/150‑1 (MQ=255)
                                                                                       ccATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCt                                                          <  2:2339640/150‑1 (MQ=255)
                                                                                        cATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCtt                                                         <  1:3576653/150‑1 (MQ=255)
                                                                                        cATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCtt                                                         <  1:3067904/150‑1 (MQ=255)
                                                                                        cATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCtt                                                         <  1:318135/150‑1 (MQ=255)
                                                                                                ttGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATa                                                 <  2:2879730/150‑1 (MQ=255)
                                                                                                 tGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATaa                                                >  2:1798413/1‑150 (MQ=255)
                                                                                                    tttACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCa                                             >  2:1197703/1‑150 (MQ=255)
                                                                                                      tACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAAc                                           >  1:635/1‑150 (MQ=255)
                                                                                                        ccGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACgg                                         <  1:462792/150‑1 (MQ=255)
                                                                                                        ccGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACgg                                         <  1:2884696/150‑1 (MQ=255)
                                                                                                        ccGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAAAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACgg                                         <  1:3308864/150‑1 (MQ=255)
                                                                                                         cggcggcggTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGt                                        <  2:3515624/150‑1 (MQ=255)
                                                                                                          ggcggcggTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGtt                                       >  2:2923008/1‑150 (MQ=255)
                                                                                                          ggcggcggTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGtt                                       <  1:728671/150‑1 (MQ=255)
                                                                                                            cggcggTTGACGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAg                                     >  1:790170/1‑150 (MQ=255)
                                                                                                              gcggTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAggg                                   >  2:2982895/1‑150 (MQ=255)
                                                                                                                ggTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGAt                                 <  2:1707689/150‑1 (MQ=255)
                                                                                                                ggTTGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGAt                                 >  2:758951/1‑150 (MQ=255)
                                                                                                                  ttGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATgg                               >  2:3116920/1‑150 (MQ=255)
                                                                                                                  ttGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTACGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATgg                               >  2:429081/1‑150 (MQ=255)
                                                                                                                   tGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGAt                                 <  1:559661/147‑1 (MQ=255)
                                                                                                                   tGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGAt                                 >  2:559661/1‑147 (MQ=255)
                                                                                                                   tGGCGCACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGt                              >  1:287/1‑150 (MQ=255)
                                                                                                                     gcgcACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTc                            <  1:1027397/150‑1 (MQ=255)
                                                                                                                       gcACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGa                          <  1:3461870/150‑1 (MQ=255)
                                                                                                                       gcACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGa                          <  1:1564151/150‑1 (MQ=255)
                                                                                                                       gcACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGa                          <  2:1799600/150‑1 (MQ=255)
                                                                                                                       gcACAAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGa                          <  2:1799740/150‑1 (MQ=255)
                                                                                                                        cacaAGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGAc                         >  2:1683077/1‑150 (MQ=255)
                                                                                                                            aGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATg                     >  2:2173722/1‑150 (MQ=255)
                                                                                                                            aGTCGCGCGACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATg                     <  1:1085770/150‑1 (MQ=255)
                                                                                                                               cgcgcgACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGgca                  <  1:2469709/150‑1 (MQ=255)
                                                                                                                                 cgcgACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACTGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGgcagc                >  2:1056044/1‑150 (MQ=255)
                                                                                                                                    gACCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAAc             >  2:1439778/1‑150 (MQ=255)
                                                                                                                                     aCCGAACGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACt            <  1:1388734/150‑1 (MQ=255)
                                                                                                                                           cGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGttttt      <  1:593363/150‑1 (MQ=255)
                                                                                                                                           cGATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGttttt      <  2:434807/150‑1 (MQ=255)
                                                                                                                                            gATACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGtttttt     >  1:1962897/1‑150 (MQ=255)
                                                                                                                                             aTACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTc    <  1:3751679/150‑1 (MQ=255)
                                                                                                                                             aTACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTc    <  2:3100213/150‑1 (MQ=255)
                                                                                                                                              tACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCa   <  2:2491166/150‑1 (MQ=255)
                                                                                                                                              tACCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCa   <  2:2491395/150‑1 (MQ=255)
                                                                                                                                               aCCTTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAg  <  2:1694786/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CAGATGTGGGGCAGCACCAGATGTGGGCTGCGCAGCACATCGCCCACACTCGCCCGGAAAATTTCATCACCTCCAGCGGTTTAGGTACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAG  >  CP009273/3945035‑3945327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑