Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 1,129,972 G→T D239Y (GAT→TAT)  flgF → flagellar component of cell‑proximal portion of basal‑body rod

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,129,9720GT100.0% 757.9 / NA 229D239Y (GAT→TAT) flgFflagellar component of cell‑proximal portion of basal‑body rod
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (122/107);  total (122/107)

Only 100 of 234 total aligned reads displayed.

GGCCGGTACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATGATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAA  >  CP009273/1129826‑1130118
                                                                                                                                                  |                                                                                                                                                  
ggCCGGTACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATtata                                                                                                                                                 >  2:2375121/1‑150 (MQ=255)
  ccGGTACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAAc                                                                                                                                               <  1:1071319/150‑1 (MQ=255)
  ccGGTACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAAc                                                                                                                                               <  1:3428528/150‑1 (MQ=255)
   cGGTACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACg                                                                                                                                              >  2:661898/1‑150 (MQ=255)
      tACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAg                                                                                                                                           <  1:3228647/150‑1 (MQ=255)
         tGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGcc                                                                                                                                        <  2:3364648/150‑1 (MQ=255)
         tGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGcc                                                                                                                                        <  1:2959810/150‑1 (MQ=255)
           caggcagATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGt                                                                                                                                      >  1:3602704/1‑150 (MQ=255)
           caggcagATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGt                                                                                                                                      <  2:1566753/150‑1 (MQ=255)
            aggcagATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTg                                                                                                                                     >  2:1711033/1‑150 (MQ=255)
            aggcagATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTg                                                                                                                                     >  1:2145950/1‑150 (MQ=255)
            aggcagATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTg                                                                                                                                     <  1:2141886/150‑1 (MQ=255)
             ggcagATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGc                                                                                                                                    <  2:3732634/150‑1 (MQ=255)
                  aTCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGccaacc                                                                                                                               >  1:3546704/1‑150 (MQ=255)
                      aaCCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAAct                                                                                                                           >  2:1615858/1‑150 (MQ=255)
                      aaCCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAAct                                                                                                                           <  2:2115638/150‑1 (MQ=255)
                      aaCCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAAct                                                                                                                           >  1:2097989/1‑150 (MQ=255)
                        ccTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAActgc                                                                                                                         >  2:2035220/1‑150 (MQ=255)
                         cTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAActgct                                                                                                                        <  2:1721851/150‑1 (MQ=255)
                         cTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAActgct                                                                                                                        <  1:138631/150‑1 (MQ=255)
                         cTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAActgct                                                                                                                        <  1:2240308/150‑1 (MQ=255)
                         cTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAActgct                                                                                                                        <  2:1722428/150‑1 (MQ=255)
                            gCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTc                                                                                                                     <  2:780765/150‑1 (MQ=255)
                                gtgATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATg                                                                                                                 >  2:1335494/1‑150 (MQ=255)
                                  gATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAg                                                                                                               <  2:3248280/150‑1 (MQ=255)
                                      tCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCTTTGCGGTAATGAGCGACATGATTGCCAGCGCGCGGAGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTaa                                                                                                           <  1:2974405/150‑1 (MQ=255)
                                        gggggTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAAtt                                                                                                         <  1:1566925/150‑1 (MQ=255)
                                        gggggTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAAtt                                                                                                         >  2:3138235/1‑150 (MQ=255)
                                        gggggTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAAtt                                                                                                         >  2:3139039/1‑150 (MQ=255)
                                           ggTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGaa                                                                                                      <  1:2447746/150‑1 (MQ=255)
                                             ttCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAg                                                                                                    <  2:1621194/150‑1 (MQ=255)
                                                tGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGAt                                                                                                 <  2:1545247/150‑1 (MQ=255)
                                                 ggAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATa                                                                                                <  1:2695777/150‑1 (MQ=255)
                                                 ggAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATa                                                                                                >  1:540115/1‑150 (MQ=255)
                                                 ggAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATa                                                                                                >  2:679429/1‑150 (MQ=255)
                                                  gAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGAt                                                                                                 >  1:1811320/1‑148 (MQ=255)
                                                   taGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACa                                                                                              >  1:468181/2‑150 (MQ=255)
                                                   aaGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACa                                                                                              <  1:953944/150‑1 (MQ=255)
                                                    aGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACAt                                                                                             >  1:2193474/1‑150 (MQ=255)
                                                          tAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAg                                                                                       <  1:2147457/150‑1 (MQ=255)
                                                             cGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGtat                                                                                    <  1:79816/150‑1 (MQ=255)
                                                              gTCAATGCCGTTGCGGCAATGAGCGACTTGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGTAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTTAAAGGATACATGACAAGtata                                                                                   <  2:95273/150‑1 (MQ=255)
                                                              gTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGtata                                                                                   >  1:3043645/1‑150 (MQ=255)
                                                               tCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATaa                                                                                  <  1:3589527/150‑1 (MQ=255)
                                                                  aTGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGtt                                                                               <  2:1522769/150‑1 (MQ=255)
                                                                   tGCCGATGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTg                                                                              >  2:188615/1‑150 (MQ=255)
                                                                    gCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGc                                                                             <  1:2859332/150‑1 (MQ=255)
                                                                      cGTTGCGGCAATGAGCGACATGAGTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGccc                                                                           <  1:3353117/150‑1 (MQ=255)
                                                                       gTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCg                                                                          >  2:3470876/1‑150 (MQ=255)
                                                                       gTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCg                                                                          >  2:1361261/1‑150 (MQ=255)
                                                                         tGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGAt                                                                        <  2:569513/150‑1 (MQ=255)
                                                                          gCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATg                                                                       <  2:1008077/150‑1 (MQ=255)
                                                                            ggCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATgcg                                                                     >  1:3738777/1‑150 (MQ=255)
                                                                                  gAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGtt                                                               <  2:3304151/150‑1 (MQ=255)
                                                                                     cGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTAt                                                            >  1:550026/1‑150 (MQ=255)
                                                                                     cGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTAt                                                            >  1:2200401/1‑150 (MQ=255)
                                                                                      gACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAACGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATc                                                           >  1:3760339/1‑150 (MQ=255)
                                                                                       aCATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCg                                                          >  2:1607516/1‑150 (MQ=255)
                                                                                         aTGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCggg                                                        <  1:3495946/150‑1 (MQ=255)
                                                                                          tGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCTATTATATCGCATGCCGTGCCTACGAATTGCTGTCGATGTGTTTATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGt                                                       <  1:1145561/150‑1 (MQ=255)
                                                                                             ttGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTa                                                    <  1:277218/150‑1 (MQ=255)
                                                                                               gCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATg                                                  <  1:661898/150‑1 (MQ=255)
                                                                                               gCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATCGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATg                                                  <  2:2078321/150‑1 (MQ=255)
                                                                                                 cAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATggg                                                >  2:2149080/1‑150 (MQ=255)
                                                                                                  aGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATgggg                                               <  1:1659684/150‑1 (MQ=255)
                                                                                                    cgcgcgGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACACGTATAAGTTGCCCGAGGCGCAAGTTTATCGGGTCTAGGGGGGc                                             >  2:3671114/1‑150 (MQ=255)
                                                                                                    cgcgcgGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGc                                             >  1:3478247/1‑150 (MQ=255)
                                                                                                       gcggcgTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAAt                                          <  2:446060/150‑1 (MQ=255)
                                                                                                        cggcgTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATc                                         <  2:2543576/150‑1 (MQ=255)
                                                                                                         ggcgTTTTGAAATGCAGTTGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCg                                        <  1:199220/150‑1 (MQ=255)
                                                                                                         ggcgTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCg                                        <  2:2420624/150‑1 (MQ=255)
                                                                                                            gTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCaa                                     >  1:1266988/1‑150 (MQ=255)
                                                                                                            gTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCaa                                     >  1:3133683/1‑150 (MQ=255)
                                                                                                            gTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCaa                                     >  1:3167822/1‑150 (MQ=255)
                                                                                                                tGAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTa                                 >  2:2358514/1‑150 (MQ=255)
                                                                                                                 gAAATGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTAt                                >  1:1750279/1‑150 (MQ=255)
                                                                                                                    aTGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGa                             >  1:1212036/1‑150 (MQ=255)
                                                                                                                    aTGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGa                             >  2:2894181/1‑150 (MQ=255)
                                                                                                                     tGCAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGAt                            <  2:2724202/150‑1 (MQ=255)
                                                                                                                       cAGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGAttt                          >  2:2931400/1‑150 (MQ=255)
                                                                                                                        aGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGAtttt                         >  1:1015435/1‑150 (MQ=255)
                                                                                                                        aGATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGAtttt                         >  1:1015901/1‑150 (MQ=255)
                                                                                                                        aGATGAAGGGGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGGTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGAtttt                         <  2:142994/150‑1 (MQ=255)
                                                                                                                         gATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTg                        <  1:2529908/150‑1 (MQ=255)
                                                                                                                         gATGAAGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTg                        <  2:3546704/150‑1 (MQ=255)
                                                                                                                             aaGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAg                    >  2:2346548/1‑150 (MQ=255)
                                                                                                                              aGGTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGc                   >  1:2945862/1‑150 (MQ=255)
                                                                                                                               ggTGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCa                  <  2:3602704/150‑1 (MQ=255)
                                                                                                                                 tGATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACt                >  2:3485905/1‑150 (MQ=255)
                                                                                                                                  gATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACtt               >  1:3796391/1‑150 (MQ=255)
                                                                                                                                  gATCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACtt               >  2:1086898/1‑150 (MQ=255)
                                                                                                                                   aTCAGCAGCGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTg              <  1:3013892/150‑1 (MQ=255)
                                                                                                                                         agcGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATAGGGTCTATGGGGGCAATCGCAATTTATCGATTTTTCGAGCACTTGTAGGcc        >  2:336117/1‑150 (MQ=255)
                                                                                                                                          gcGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCg       >  2:3502627/1‑150 (MQ=255)
                                                                                                                                          gcGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCg       >  1:3082789/1‑150 (MQ=255)
                                                                                                                                           cGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCgg      >  2:1822963/1‑150 (MQ=255)
                                                                                                                                           cGTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCgg      >  1:20689/1‑150 (MQ=255)
                                                                                                                                            gTCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGa     >  2:392089/1‑150 (MQ=255)
                                                                                                                                             tCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGAt    <  1:1615839/150‑1 (MQ=255)
                                                                                                                                             tCGATTATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGAt    <  2:2493803/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
GGCCGGTACTGCAGGCAGATCCAACCTTGCGTGTGATGTCGGGGGTTCTGGAAGGCAGTAACGTCAATGCCGTTGCGGCAATGAGCGACATGATTGCCAGCGCGCGGCGTTTTGAAATGCAGATGAAGGTGATCAGCAGCGTCGATGATAACGCAGGCCGTGCCAACCAACTGCTGTCGATGAGTTAATTGAAAGGATACATGACAAGTATAAGTTGCCCGATGCGCAAGTTTATCGGGTCTATGGGGGCAATCGCAATTTATCGATTTTGCGAGCACTTGTAGGCCGGATAA  >  CP009273/1129826‑1130118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑