Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 2,008,669 C→A T103T (ACC→ACA)  fliG → flagellar motor switching and energizing component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,008,6690CA100.0% 720.7 / NA 215T103T (ACC→ACA) fliGflagellar motor switching and energizing component
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (115/100);  total (115/100)

Only 100 of 215 total aligned reads displayed.

TGTGCTGGCGGAGTTTGAGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACCGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGAACG  >  CP009273/2008522‑2008815
                                                                                                                                                   |                                                                                                                                                  
tgtgCTGGCGGAGTTTGAGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGc                                                                                                                                                  >  1:3298342/1‑150 (MQ=255)
tgtgCTGGCGGAGTTTGAGCAAGAAGCTGAACAGTATGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGc                                                                                                                                                  <  2:703409/150‑1 (MQ=255)
   gCTGGCGGAGTTTGAGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAg                                                                                                                                               <  1:135385/150‑1 (MQ=255)
          gAGTTTGAGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTAtt                                                                                                                                        <  1:729928/150‑1 (MQ=255)
              ttGAGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGaaa                                                                                                                                    <  1:762094/150‑1 (MQ=255)
               tGAGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTAGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAAc                                                                                                                                   <  1:1064633/150‑1 (MQ=255)
                 aGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGc                                                                                                                                 >  2:2788071/1‑150 (MQ=255)
                    aagaagCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCa                                                                                                                              >  1:2730831/1‑150 (MQ=255)
                    aagaagCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCa                                                                                                                              >  2:1961965/1‑150 (MQ=255)
                    aagaagCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCa                                                                                                                              >  2:2164020/1‑150 (MQ=255)
                    aagaagCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCa                                                                                                                              >  1:1820203/1‑150 (MQ=255)
                     agaagCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCaa                                                                                                                             >  2:1786842/1‑150 (MQ=255)
                      gaagCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAAc                                                                                                                            >  1:920689/1‑150 (MQ=255)
                         gCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACttt                                                                                                                         <  2:3490265/150‑1 (MQ=255)
                           tGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTAt                                                                                                                       >  2:1277356/1‑150 (MQ=255)
                           tGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTAt                                                                                                                       <  2:1456266/150‑1 (MQ=255)
                           tGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTAt                                                                                                                       >  2:1278736/1‑150 (MQ=255)
                             aaCAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATgg                                                                                                                     <  1:644818/150‑1 (MQ=255)
                             aaCAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATgg                                                                                                                     <  1:3156392/150‑1 (MQ=255)
                              aCAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGa                                                                                                                    >  2:3321554/1‑150 (MQ=255)
                              aCAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGa                                                                                                                    >  2:405036/1‑150 (MQ=255)
                               cAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAg                                                                                                                   <  2:1728530/150‑1 (MQ=255)
                                  tttGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCca                                                                                                                <  1:2006301/150‑1 (MQ=255)
                                   ttGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCcac                                                                                                               >  2:455019/1‑150 (MQ=255)
                                   ttGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCcac                                                                                                               <  1:2425884/150‑1 (MQ=255)
                                   ttGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATAGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCcac                                                                                                               >  2:2605909/1‑150 (MQ=255)
                                    tGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCcaca                                                                                                              >  2:3113202/1‑150 (MQ=255)
                                     gCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACag                                                                                                             <  2:2098033/150‑1 (MQ=255)
                                        gCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAgc                                                                                                          >  1:896806/1‑150 (MQ=255)
                                         cACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAgcg                                                                                                         <  1:3488293/150‑1 (MQ=255)
                                          aCTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAgcgc                                                                                                        >  2:1518385/1‑150 (MQ=255)
                                          aCTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAgcgc                                                                                                        >  2:1993673/1‑150 (MQ=255)
                                          aCTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAgcgc                                                                                                        >  1:1413921/1‑150 (MQ=255)
                                              aaTATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCgccgcc                                                                                                    <  1:2527152/150‑1 (MQ=255)
                                                tatCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGa                                                                                                  >  2:2961878/1‑150 (MQ=255)
                                                 atCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGAt                                                                                                 <  1:2546628/150‑1 (MQ=255)
                                                 atCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGAt                                                                                                 <  1:2259679/150‑1 (MQ=255)
                                                 atCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGAt                                                                                                 >  2:3672335/1‑150 (MQ=255)
                                                   cAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCt                                                                                               <  1:2057325/150‑1 (MQ=255)
                                                   cAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCt                                                                                               >  2:2885141/1‑150 (MQ=255)
                                                    aaCGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTg                                                                                              >  1:3654369/1‑150 (MQ=255)
                                                        ccAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTc                                                                                          <  2:1040445/150‑1 (MQ=255)
                                                         cAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTcg                                                                                         <  1:2757716/150‑1 (MQ=255)
                                                           aCGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTcgcg                                                                                       <  2:1650360/150‑1 (MQ=255)
                                                            cGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGa                                                                                      >  1:496935/1‑150 (MQ=255)
                                                            cGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGa                                                                                      >  1:2907931/1‑150 (MQ=255)
                                                                 aTCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGc                                                                                 >  1:1579183/1‑150 (MQ=255)
                                                                      cgcTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCg                                                                            >  1:1016297/1‑150 (MQ=255)
                                                                           ggTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAAt                                                                       <  1:266969/150‑1 (MQ=255)
                                                                           ggTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAAt                                                                       >  2:597971/1‑150 (MQ=255)
                                                                             tATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTa                                                                     >  1:3026063/1‑150 (MQ=255)
                                                                              aTTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTAt                                                                    <  1:2836529/150‑1 (MQ=255)
                                                                              aTTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTAt                                                                    >  2:1399213/1‑150 (MQ=255)
                                                                                tGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCg                                                                  >  2:1934043/1‑150 (MQ=255)
                                                                                  gTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCCCGATGAGCATCCGCAAATTATCGcc                                                                >  1:3226858/1‑150 (MQ=255)
                                                                                   tCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACGGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGcca                                                               <  2:3053831/150‑1 (MQ=255)
                                                                                    cAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGccac                                                              >  2:596091/1‑150 (MQ=255)
                                                                                     aaaGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGccacc                                                             >  1:2721858/1‑150 (MQ=255)
                                                                                      aaGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGccacca                                                            >  1:2110906/1‑150 (MQ=255)
                                                                                        gCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCAtt                                                          >  1:3567641/1‑150 (MQ=255)
                                                                                           ctGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTg                                                       >  1:334691/1‑150 (MQ=255)
                                                                                           ctGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTg                                                       <  1:2186401/150‑1 (MQ=255)
                                                                                             gggTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGt                                                     <  1:2632918/150‑1 (MQ=255)
                                                                                             gggTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGt                                                     <  1:1864349/150‑1 (MQ=255)
                                                                                                tGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCa                                                  >  1:431167/1‑150 (MQ=255)
                                                                                                 gaagaaCGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCAt                                                 >  1:1155233/1‑150 (MQ=255)
                                                                                                 gaagaaCGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCAt                                                 >  1:1041600/1‑150 (MQ=255)
                                                                                                   agaaCGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCt                                               <  2:2720628/150‑1 (MQ=255)
                                                                                                     aaCGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGa                                             >  2:3530463/1‑150 (MQ=255)
                                                                                                     aaCGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGa                                             >  2:3531881/1‑150 (MQ=255)
                                                                                                      aCGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGaa                                            <  2:3456960/150‑1 (MQ=255)
                                                                                                      aCGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGaa                                            <  2:3383454/150‑1 (MQ=255)
                                                                                                       cGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAg                                           >  1:1799766/1‑150 (MQ=255)
                                                                                                         tGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAgcg                                         <  2:1042020/150‑1 (MQ=255)
                                                                                                          gccgccAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAgcgc                                        >  2:2901261/1‑150 (MQ=255)
                                                                                                          gccgccAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAgcgc                                        >  2:400078/1‑150 (MQ=255)
                                                                                                              ccAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGccc                                    >  2:679222/1‑150 (MQ=255)
                                                                                                                aGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCaa                                  <  2:478420/150‑1 (MQ=255)
                                                                                                                aGCCTGCTGGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCaa                                  >  1:2392754/1‑150 (MQ=255)
                                                                                                                    tgctgGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccg                              >  2:2389737/1‑150 (MQ=255)
                                                                                                                      ctgGAAGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAgccgcc                            >  1:773766/1‑150 (MQ=255)
                                                                                                                          aaGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGata                        <  1:3113202/150‑1 (MQ=255)
                                                                                                                          aaGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGata                        <  1:2788071/150‑1 (MQ=255)
                                                                                                                           aGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGatat                       >  2:434282/1‑150 (MQ=255)
                                                                                                                           aGATATTCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGatat                       >  1:1975747/1‑150 (MQ=255)
                                                                                                                                ttCTCGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTgg                  >  2:720263/1‑150 (MQ=255)
                                                                                                                                  ctcGAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCg                <  2:366126/150‑1 (MQ=255)
                                                                                                                                     gAAACTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgttg             >  2:2819167/1‑150 (MQ=255)
                                                                                                                                      aaaCTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGCGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgttgt            <  2:1555752/150‑1 (MQ=255)
                                                                                                                                       aaCTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgttgtt           >  2:829793/1‑150 (MQ=255)
                                                                                                                                       aaCTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgttgtt           <  1:1718716/150‑1 (MQ=255)
                                                                                                                                       aaCTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgttgtt           <  2:77086/150‑1 (MQ=255)
                                                                                                                                       aaCTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCgttgtt           >  2:813443/1‑150 (MQ=255)
                                                                                                                                        aCTCGCGATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTc          >  2:2258794/1‑150 (MQ=255)
                                                                                                                                             cgATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGa     >  2:1009063/1‑150 (MQ=255)
                                                                                                                                              gATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGaa    >  1:2649893/1‑150 (MQ=255)
                                                                                                                                              gATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGaa    >  2:3278134/1‑150 (MQ=255)
                                                                                                                                              gATACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGaa    >  2:3067176/1‑150 (MQ=255)
                                                                                                                                               aTACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGAAc   >  2:3552346/1‑150 (MQ=255)
                                                                                                                                                tACAGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGAACg  <  1:1961965/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TGTGCTGGCGGAGTTTGAGCAAGAAGCTGAACAGTTTGCCGCACTGAATATCAACGCCAACGATTATCTGCGCTCGGTATTGGTCAAAGCTCTGGGTGAAGAACGTGCCGCCAGCCTGCTGGAAGATATTCTCGAAACTCGCGATACCGCCAGCGGTATTGAAACGCTCAACTTTATGGAGCCACAGAGCGCCGCCGATCTGATTCGCGATGAGCATCCGCAAATTATCGCCACCATTCTGGTGCATCTGAAGCGCGCCCAAGCCGCCGATATTCTGGCGTTGTTCGATGAACG  >  CP009273/2008522‑2008815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑