Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 2,476,524 T→A N99Y (AAT→TAT)  emrK ← EmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,476,5240TA100.0% 773.2 / NA 231N99Y (AAT→TAT) emrKEmrKY‑TolC multidrug resistance efflux pump, membrane fusion protein component
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (117/114);  total (117/114)

Only 100 of 240 total aligned reads displayed.

TAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGA  >  CP009273/2476377‑2476670
                                                                                                                                                   |                                                                                                                                                  
tAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTAtatt                                                                                                                                                  <  2:3799004/150‑1 (MQ=255)
tAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTAtatt                                                                                                                                                  <  1:155869/150‑1 (MQ=255)
  aCCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTa                                                                                                                                                >  1:1073883/1‑150 (MQ=255)
  aCCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTa                                                                                                                                                <  1:2064342/150‑1 (MQ=255)
  aCCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTa                                                                                                                                                >  1:1316070/1‑150 (MQ=255)
    ccccTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGc                                                                                                                                              >  2:3098568/1‑150 (MQ=255)
     cccTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCt                                                                                                                                             <  1:1359406/150‑1 (MQ=255)
     cccTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCt                                                                                                                                             <  2:3381800/150‑1 (MQ=255)
     cccTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCt                                                                                                                                             >  1:1884317/1‑150 (MQ=255)
      ccTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCtt                                                                                                                                            >  2:3167211/1‑150 (MQ=255)
        tGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTa                                                                                                                                          <  2:1448728/150‑1 (MQ=255)
        tGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTa                                                                                                                                          <  2:535070/150‑1 (MQ=255)
           ttCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTg                                                                                                                                       <  2:3441780/150‑1 (MQ=255)
             cGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAg                                                                                                                                     <  2:2880209/150‑1 (MQ=255)
             cGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTACGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAg                                                                                                                                     >  1:3455409/1‑150 (MQ=255)
              gCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGt                                                                                                                                    <  2:539516/150‑1 (MQ=255)
                 aaCGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCg                                                                                                                                 >  2:3208848/1‑150 (MQ=255)
                    ggCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATa                                                                                                                              <  2:2657444/150‑1 (MQ=255)
                      cACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGt                                                                                                                            >  1:2393167/1‑150 (MQ=255)
                           gACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCAt                                                                                                                       >  1:2113893/1‑150 (MQ=255)
                            aCGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATc                                                                                                                      >  1:3175551/1‑150 (MQ=255)
                             cGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCa                                                                                                                     <  1:1986960/150‑1 (MQ=255)
                             cGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCa                                                                                                                     >  1:352953/1‑150 (MQ=255)
                             cGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCa                                                                                                                     >  1:320952/1‑150 (MQ=255)
                               gTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGt                                                                                                                   >  2:1209194/1‑150 (MQ=255)
                                ttATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGtt                                                                                                                  <  1:2695208/150‑1 (MQ=255)
                                    aaTCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTAt                                                                                                              >  2:1586637/1‑150 (MQ=255)
                                    aaTCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTAt                                                                                                              >  2:1045269/1‑150 (MQ=255)
                                      tcttctAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATcc                                                                                                            <  2:3748599/150‑1 (MQ=255)
                                      tcttctAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATcc                                                                                                            <  2:3068142/150‑1 (MQ=255)
                                      tcttctAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATcc                                                                                                            <  2:1698541/150‑1 (MQ=255)
                                      tcttctAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATcc                                                                                                            <  1:902970/150‑1 (MQ=255)
                                      tcttctAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATcc                                                                                                            <  1:482120/150‑1 (MQ=255)
                                       cttctAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCa                                                                                                           >  2:3527550/1‑150 (MQ=255)
                                        ttctAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAg                                                                                                          >  1:1267243/1‑150 (MQ=255)
                                            aaaGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATGGTGGCATCAGTTTTATCCAGTGaa                                                                                                      >  1:390540/1‑150 (MQ=255)
                                            aaaGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGaa                                                                                                      >  2:576188/1‑150 (MQ=255)
                                              aGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAAc                                                                                                    >  1:1804793/1‑150 (MQ=255)
                                                aTTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTa                                                                                                  >  2:3398612/1‑150 (MQ=255)
                                                  tgttgATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTaaa                                                                                                >  1:557146/1‑150 (MQ=255)
                                                    ttgATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAAt                                                                                              <  1:3050988/150‑1 (MQ=255)
                                                    ttgATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAAt                                                                                              <  2:238838/150‑1 (MQ=255)
                                                    ttgATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAAt                                                                                              <  2:3093635/150‑1 (MQ=255)
                                                     tgATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATg                                                                                             <  2:1172892/150‑1 (MQ=255)
                                                      gATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATAATATTTAGCTATATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGt                                                                                            >  1:455615/1‑150 (MQ=255)
                                                          cTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCAcc                                                                                        >  1:2192624/1‑150 (MQ=255)
                                                          cTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCAcc                                                                                        >  1:67942/1‑150 (MQ=255)
                                                            gAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCtt                                                                                      >  1:1613018/1‑150 (MQ=255)
                                                              aTACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGt                                                                                    >  1:2895180/1‑150 (MQ=255)
                                                               tACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTc                                                                                   >  1:1594014/1‑150 (MQ=255)
                                                               tACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTc                                                                                   <  2:1073883/150‑1 (MQ=255)
                                                               tACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTc                                                                                   >  1:1100503/1‑150 (MQ=255)
                                                               tACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTc                                                                                   >  1:455332/1‑150 (MQ=255)
                                                                 cGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGa                                                                                 <  2:2055942/150‑1 (MQ=255)
                                                                       gAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGGAACTAAAATGTCACCTTGTCGAACGTAg                                                                           >  2:251751/1‑150 (MQ=255)
                                                                       gAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAg                                                                           <  1:2294901/150‑1 (MQ=255)
                                                                        aaGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGt                                                                          <  2:1267382/150‑1 (MQ=255)
                                                                        aaGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGt                                                                          <  1:1675657/150‑1 (MQ=255)
                                                                         aGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGtt                                                                         <  2:3015708/150‑1 (MQ=255)
                                                                         aGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGtt                                                                         >  1:1321792/1‑150 (MQ=255)
                                                                           cGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGATTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCg                                                                       <  1:2578663/150‑1 (MQ=255)
                                                                                 cGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCtt                                                                 <  2:2634014/150‑1 (MQ=255)
                                                                                     aCTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATg                                                             <  2:3455409/150‑1 (MQ=255)
                                                                                     aCTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATg                                                             >  2:2818317/1‑150 (MQ=255)
                                                                                        gTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGAtt                                                          <  2:1809279/150‑1 (MQ=255)
                                                                                         tATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTa                                                         >  1:2505740/1‑150 (MQ=255)
                                                                                         tATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTa                                                         >  2:1390106/1‑150 (MQ=255)
                                                                                         tATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTa                                                         >  2:3603566/1‑150 (MQ=255)
                                                                                                tATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAg                                                  >  1:618095/1‑150 (MQ=255)
                                                                                                tATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAg                                                  <  2:2297090/150‑1 (MQ=255)
                                                                                                  tCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTg                                                <  1:3434450/150‑1 (MQ=255)
                                                                                                   ccTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGa                                               <  2:1967560/150‑1 (MQ=255)
                                                                                                   ccTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGa                                               >  2:2769641/1‑150 (MQ=255)
                                                                                                       tAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACt                                           >  2:3299822/1‑150 (MQ=255)
                                                                                                        aaGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTa                                          >  2:1470677/1‑150 (MQ=255)
                                                                                                         aGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTAc                                         <  2:1613018/150‑1 (MQ=255)
                                                                                                         aGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTAc                                         >  1:662641/1‑150 (MQ=255)
                                                                                                          gTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTAcc                                        >  1:1413823/1‑150 (MQ=255)
                                                                                                            ataGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTg                                      <  1:3121905/150‑1 (MQ=255)
                                                                                                            ataGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTg                                      <  1:3121879/150‑1 (MQ=255)
                                                                                                            ataGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTg                                      >  1:1556247/1‑150 (MQ=255)
                                                                                                                tttATTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGAc                                  <  2:1316070/150‑1 (MQ=255)
                                                                                                                   aTTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTtg                               <  2:1128123/150‑1 (MQ=255)
                                                                                                                   aTTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTtg                               >  2:2335696/1‑150 (MQ=255)
                                                                                                                   aTTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTtg                               >  2:1610791/1‑150 (MQ=255)
                                                                                                                   aTTCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTtg                               >  2:1510434/1‑150 (MQ=255)
                                                                                                                    ttCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTtgt                              <  1:1911001/150‑1 (MQ=255)
                                                                                                                    ttCGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTtgt                              >  1:1143573/1‑150 (MQ=255)
                                                                                                                      cGTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGc                            <  1:1045269/150‑1 (MQ=255)
                                                                                                                       gTTTGCCGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCa                           >  2:2680210/1‑150 (MQ=255)
                                                                                                                            ccGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAAt                      >  2:1712520/1‑150 (MQ=255)
                                                                                                                            ccGAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAAt                      >  1:2202213/1‑150 (MQ=255)
                                                                                                                              gAACAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTg                    <  1:3786489/150‑1 (MQ=255)
                                                                                                                               aaCAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTgg                   >  2:2272678/1‑150 (MQ=255)
                                                                                                                                 cAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGAt                 <  2:1226603/150‑1 (MQ=255)
                                                                                                                                 cAATATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGAt                 >  1:2546671/1‑150 (MQ=255)
                                                                                                                                  aaTATTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATc                >  1:1432500/1‑150 (MQ=255)
                                                                                                                                   atatTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCt               <  2:67942/150‑1 (MQ=255)
                                                                                                                                    tatTTGCCAGATTATATTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTg              <  2:798490/150‑1 (MQ=255)
                                                                                                                                               ttataTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTg   <  2:3563715/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTATCCTGTAAGTATAGTTTATTCGTTTGCCGAACAATATTTGCCAGATTATTTTTAGCTTTATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGGATCTGCATTCCCCGTGA  >  CP009273/2476377‑2476670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑