| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 245,020 | G→T | pseudogene (1538/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 245,020 | 0 | G | T | 99.5% | 671.9 / NA | 202 | pseudogene (1538/1713 nt) | lfhA | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (93/108); total (94/108) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 202 total aligned reads displayed.
CCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTGGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCGACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTCAGCTCCTG > CP009273/244874‑245165 | ccAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCACAGGGCGCAGCTGCGGTGGCACCAGCCGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGGGGCa > 2:3288165/1‑150 (MQ=255) aGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATc > 1:2997522/1‑150 (MQ=255) aGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATc > 1:145969/1‑150 (MQ=255) aGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATc < 1:2976451/150‑1 (MQ=255) ccGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTActct < 1:1245822/150‑1 (MQ=255) ggCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTgg > 1:475914/1‑150 (MQ=255) cACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGaa > 1:3708490/1‑150 (MQ=255) cTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACt < 1:3419037/150‑1 (MQ=255) cTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACt > 1:1764854/1‑150 (MQ=255) ttCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTg < 2:2506805/150‑1 (MQ=255) ttCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTg < 2:2092384/150‑1 (MQ=255) cGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGt < 2:261806/150‑1 (MQ=255) ttATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTg < 2:2782818/150‑1 (MQ=255) tataCGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGa < 2:2368798/150‑1 (MQ=255) taCGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGc < 1:1867521/150‑1 (MQ=255) cGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCat < 1:1008643/150‑1 (MQ=255) cGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCat < 1:3357527/150‑1 (MQ=255) aCAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCatat > 2:795126/1‑150 (MQ=255) cAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATAtt < 1:2355362/150‑1 (MQ=255) aGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTc < 1:411359/150‑1 (MQ=255) acaTGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGa < 2:697180/150‑1 (MQ=255) caTGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGAt < 2:3644304/150‑1 (MQ=255) caTGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGAt > 1:489438/1‑150 (MQ=255) aGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGACCTGGTTGAGCATATTCGGATCTAcc > 2:472406/1‑150 (MQ=255) aGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTAcc < 1:2311759/150‑1 (MQ=255) aGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTAcc < 2:2121106/150‑1 (MQ=255) ggCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACg > 1:1517181/1‑150 (MQ=255) cgcAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCt < 2:1834550/150‑1 (MQ=255) gcAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGATATTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTAGGATCTACCGGCACGCtt > 1:331441/1‑149 (MQ=255) cAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGt > 1:584015/1‑150 (MQ=255) aacaacCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCg < 1:2032399/150‑1 (MQ=255) acaacCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGa > 1:1595259/1‑150 (MQ=255) caacCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAg < 2:3464125/150‑1 (MQ=255) ccTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCAt < 1:2891144/150‑1 (MQ=255) ccTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCAt > 2:103910/1‑150 (MQ=255) gCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACt < 2:2938371/150‑1 (MQ=255) tAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTc < 1:1712831/150‑1 (MQ=255) aaCGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTcc > 1:345270/1‑150 (MQ=255) aaCGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTcc > 2:21269/1‑150 (MQ=255) cgcgCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCg < 1:2179164/150‑1 (MQ=255) cgcCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGcc > 1:2533924/1‑150 (MQ=255) cgcCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGcc > 2:3600252/1‑150 (MQ=255) ccAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCt < 2:884893/150‑1 (MQ=255) ccAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCt < 2:3205364/150‑1 (MQ=255) aaaGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTgc > 2:412362/1‑150 (MQ=255) aGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTgcgc > 2:636904/1‑150 (MQ=255) gggCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGcc > 2:875670/1‑150 (MQ=255) gggCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGcc > 2:2845822/1‑150 (MQ=255) cgcAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGa > 1:1332243/1‑150 (MQ=255) gcAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGAt < 2:258406/150‑1 (MQ=255) gcAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGAt < 1:2542630/150‑1 (MQ=255) gcAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGAt < 2:3539614/150‑1 (MQ=255) cAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGAtt < 2:2298451/150‑1 (MQ=255) aGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGGTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTc < 2:2420720/150‑1 (MQ=255) cTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTcac > 2:2816020/1‑150 (MQ=255) cTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTcac < 2:1312656/150‑1 (MQ=255) cTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTcac > 1:829264/1‑150 (MQ=255) tGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTcacc < 2:173784/150‑1 (MQ=255) gCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTcacca < 2:1076115/150‑1 (MQ=255) cGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGTGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTcaccac < 1:1105478/150‑1 (MQ=255) cGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTcaccac < 2:194548/150‑1 (MQ=255) ggTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACg > 2:1864633/1‑150 (MQ=255) tGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGtt > 1:1885517/1‑150 (MQ=255) ggCACCAGCGGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTg < 2:2801110/150‑1 (MQ=255) gCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTgg < 2:3163505/150‑1 (MQ=255) gCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTgg < 2:2997522/150‑1 (MQ=255) gCACCAGCAGCACCGGGTCTGTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTgg < 2:3120115/150‑1 (MQ=255) cACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGt < 2:3244405/150‑1 (MQ=255) cACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGt < 1:548561/150‑1 (MQ=255) cACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGt < 2:2177232/150‑1 (MQ=255) aCCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTc > 2:2052014/1‑150 (MQ=255) cagcagCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCAGTTGCGCCTGATTCACCACGTTGGTcag > 1:1303127/1‑150 (MQ=255) gcagcaCCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTcagca < 1:3409888/150‑1 (MQ=255) cagcaCCGGGTCTGTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTcagcag < 2:2893264/150‑1 (MQ=255) gcaCCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGAt > 1:344331/1‑150 (MQ=255) caCCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGAtt > 1:2244504/1‑150 (MQ=255) ccGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCTCTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGAtttt < 2:1509502/150‑1 (MQ=255) ccGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGAtttt < 2:1511826/150‑1 (MQ=255) gggTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTcc > 1:577593/1‑150 (MQ=255) gggTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTcc > 2:3769727/1‑150 (MQ=255) ggTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCa > 2:284096/1‑150 (MQ=255) gTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAg < 1:974965/150‑1 (MQ=255) cTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCt < 1:1579564/150‑1 (MQ=255) tttCCCCGCCGCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTc < 2:1231717/150‑1 (MQ=255) ccgccgCTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCattat > 1:1171760/1‑150 (MQ=255) cgccgcTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCattatt < 2:2290649/150‑1 (MQ=255) gccgcTTTCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTc > 2:3269276/1‑150 (MQ=255) ttCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGta > 2:3406060/1‑150 (MQ=255) tCATCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGtat < 2:1049038/150‑1 (MQ=255) aTCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATac > 1:3615842/1‑150 (MQ=255) aTCTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATac < 1:3665546/150‑1 (MQ=255) cTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATacac > 1:2206730/1‑150 (MQ=255) cTGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATacac < 2:303580/150‑1 (MQ=255) tGCTCTTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACAcc > 1:2810642/1‑150 (MQ=255) tctTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTc < 2:829264/150‑1 (MQ=255) tctTTCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTGTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTc < 1:2471833/150‑1 (MQ=255) tttCACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTCAg > 2:3721302/1‑150 (MQ=255) ttCATCTGTTGCATCGTACTCTGGAAATGGTTGAGCATATTAGGATCTACCGGCTCGATGTCGAGTATCACTTTCCCGACCTGTTGCGCATGATTCACCACTTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTCAGc < 1:3276356/150‑1 (MQ=255) cACCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTCAGCTc > 2:3582927/1‑150 (MQ=255) aCCTGTTGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCTACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTCAGCTcc < 1:1463743/150‑1 (MQ=255) | CCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCATAACGCGCCAGCAAAGGGCGCAGCTGCGGTGGCACCAGCAGCACCGGGTCTTTCCCCGCCGCTTTCATCTGCTCTTTCACCTGTGGCATCGTACTCTGGAACTGGTTGAGCATATTCGGATCGACCGGCACGCTGTCGAGCATCACTTTCCCGCCCTGTTGCGCCTGATTCACCACGTTGGTCAGCAGATTTTCCAGCTCATTATTCAGCGTATACACCGTCAGCTCCTG > CP009273/244874‑245165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |