| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,243,278 | G→A | 13.4% | S431S (AGC→AGT) | dhaM ← | putative dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,243,278 | 0 | G | A | 13.4% | 936.5 / 101.7 | 314 | S431S (AGC→AGT) | dhaM | putative dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
| Reads supporting (aligned to +/- strand): ref base G (125/146); new base A (20/22); total (145/169) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 322 total aligned reads displayed.
AACGATGCCATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTCGTTTGGGTCAGGTG > CP009273/1243129‑1243427 | aaCGATGCCATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGgcg > 2:165247/1‑150 (MQ=255) cGATGCCATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCt > 2:4264057/1‑150 (MQ=255) gATGCCATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCtg > 1:461426/1‑150 (MQ=255) gATGCCATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCtg > 1:2900179/1‑150 (MQ=255) gCCATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCGGTgg > 2:3991823/1‑150 (MQ=255) cATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGa < 2:1889794/150‑1 (MQ=255) cAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGAc < 1:888499/150‑1 (MQ=255) aGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACt > 2:2939808/1‑150 (MQ=255) tGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTc > 1:1413949/1‑150 (MQ=255) ggCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTcc < 2:2568955/150‑1 (MQ=255) aaCCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATACAGCCAATCCCCCGGTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGgcgc > 2:4582090/1‑150 (MQ=255) aCCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCt > 2:1083456/1‑150 (MQ=255) aCCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCt < 2:2041175/150‑1 (MQ=255) cccTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTa < 1:2809324/150‑1 (MQ=255) cccTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTa < 1:4151856/150‑1 (MQ=255) tGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAgg > 1:1299735/1‑150 (MQ=255) gACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGc > 1:5099695/1‑150 (MQ=255) gACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGc > 1:1213952/1‑150 (MQ=255) cGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAg > 1:1926300/1‑150 (MQ=255) cGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAg < 2:5162484/150‑1 (MQ=255) gTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGAt < 1:1536109/150‑1 (MQ=255) ttGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATa < 2:353010/150‑1 (MQ=255) tGAAACGGTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGAGGTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATAc > 2:738018/1‑150 (MQ=255) gAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATAcc > 1:210141/1‑150 (MQ=255) aaCGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCtt > 2:5080890/1‑150 (MQ=255) ttGCGATTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTAc < 2:1547147/150‑1 (MQ=255) tGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACa > 1:4643930/1‑150 (MQ=255) gCGTTTTAACGTCCAGCGTTAGCGTTTCGTCTGGTTGTATCGCATACAGTTTCGCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACaa < 2:2683837/150‑1 (MQ=255) cGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAAc < 1:3360453/150‑1 (MQ=255) tAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAAccgccg > 1:4531227/1‑150 (MQ=255) aaCGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCgg > 1:2621828/1‑150 (MQ=255) aaCGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCgg > 1:5210880/1‑150 (MQ=255) aCGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGa < 1:4032916/150‑1 (MQ=255) cGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGAt < 2:2141004/150‑1 (MQ=255) gTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATc < 1:2612593/150‑1 (MQ=255) tCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATcc < 1:863181/150‑1 (MQ=255) ccAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCa > 1:2464377/1‑150 (MQ=255) ccAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCa < 2:443595/150‑1 (MQ=255) cAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAg < 2:486129/150‑1 (MQ=255) gttagcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGc > 1:2711642/1‑150 (MQ=255) ttagcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCa > 2:2469327/1‑150 (MQ=255) ttagcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCa > 2:21777/1‑150 (MQ=255) tagcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAg > 1:4883549/1‑150 (MQ=255) agcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGt < 2:3541078/150‑1 (MQ=255) agcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGt < 1:3577466/150‑1 (MQ=255) agcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGt > 1:632233/1‑150 (MQ=255) gcgttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTa < 2:2066488/150‑1 (MQ=255) gagttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTa < 1:2823562/148‑1 (MQ=255) gttTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACt < 2:4982062/150‑1 (MQ=255) tttCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACtg < 2:4518659/150‑1 (MQ=255) ttcttcTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACtgt < 2:2121623/150‑1 (MQ=255) tcttctGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACtgtg > 1:4745771/1‑150 (MQ=255) cttctGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTgg < 2:4557836/150‑1 (MQ=255) cttctGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTgg < 2:4761337/150‑1 (MQ=255) ctGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAg > 1:4472676/1‑150 (MQ=255) tGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAgg < 1:3927162/150‑1 (MQ=255) aTCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATg < 2:4680830/150‑1 (MQ=255) cGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGtt < 1:3464685/150‑1 (MQ=255) gCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTtc > 1:3613879/1‑150 (MQ=255) cATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTtct > 2:5044165/1‑150 (MQ=255) cATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTtct > 1:2335184/1‑150 (MQ=255) aTACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTtctc > 2:1181484/1‑150 (MQ=255) aCAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCg < 1:1324023/150‑1 (MQ=255) cAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGTTACCGGACTTCCGGCGCTAAGTCAGATACCTTTAACAACCGCCGGATCCCGTTGCTGGACTGTGGCAGGAGAGAGGTGCTcctc > 2:3240512/1‑148 (MQ=255) cAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGc > 1:305207/1‑150 (MQ=255) cAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGc > 1:3301551/1‑150 (MQ=255) gTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAg < 2:4965443/132‑1 (MQ=255) gTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCa < 2:4579684/150‑1 (MQ=255) gTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATACATGTTCTCCGCCa > 2:3970678/1‑150 (MQ=255) ctcACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAg < 2:836521/150‑1 (MQ=255) ctcACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAg < 2:3189583/150‑1 (MQ=255) tcACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGa > 1:430367/1‑150 (MQ=255) cACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGaa < 1:1031432/150‑1 (MQ=255) cACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGaa < 1:3652018/150‑1 (MQ=255) cACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGaa > 1:2199989/1‑150 (MQ=255) cccTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATa < 1:684236/150‑1 (MQ=255) ctgctgGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGt > 1:819733/1‑150 (MQ=255) ctgctgGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGt > 2:1432888/1‑150 (MQ=255) tgctgGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCCGTAGACTAGtt > 2:4393187/1‑150 (MQ=255) ctgGCAAATCCAGCCAATCCCCAGTTCACGGGCGAGTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTAGTGTGGAAGGATTAATGTTCTCCGCCAGTAGAATAGTTgg > 2:3089858/1‑150 (MQ=255) ggCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCg < 2:2225573/150‑1 (MQ=255) aaaTCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGt < 1:4248880/150‑1 (MQ=255) aaTCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGtt < 1:1055397/150‑1 (MQ=255) aTCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTa < 2:3667994/150‑1 (MQ=255) cAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAAc < 1:753785/150‑1 (MQ=255) ccAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGCATAGTTGGCGAGTTAAACTGc > 1:3692010/1‑150 (MQ=255) aTCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCggg < 2:4124719/150‑1 (MQ=255) tCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGa < 2:1616955/150‑1 (MQ=255) ccccAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAg < 2:1299735/150‑1 (MQ=255) cAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGttc > 1:945606/1‑150 (MQ=255) gTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGttctt < 2:60278/150‑1 (MQ=255) ttCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGttcttc > 1:4007734/1‑150 (MQ=255) ttCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGttcttc > 1:2425089/1‑150 (MQ=255) cACGGGCGATTAGGGCACTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTcttctt > 2:3384438/1‑150 (MQ=255) cGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACACCCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTc < 1:4449950/150‑1 (MQ=255) cGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTCGttt < 2:146824/150‑1 (MQ=255) gATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTCGTTTg > 2:1712782/1‑150 (MQ=255) tAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTCGTTTGGGt > 1:176324/1‑150 (MQ=255) gggCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTCGTTTGGGTCa < 2:4465114/150‑1 (MQ=255) gcTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTCGTTTGGGTCAGGTg < 2:3153718/150‑1 (MQ=255) | AACGATGCCATCCGAACAGTGGCTTAACCCTGACGGTTGAAACGTTGCGTTTTAACGTCCAGCGTTAGCGTTTCTTCTGGTTGTATCGCATACAGTTTCTCACCCTGCTGGCAAATCCAGCCAATCCCCAGTTCACGGGCGATTAGGGCGCTGTGGGATACCGGACTTCCGGCGCTAAGGCAGATACCTTTTACAACCGCCGGATCCAGTTGCAGTACTGTGGAAGGATAAATGTTCTCCGCCAGTAGAATAGTTGGCGAGTTAAACTGCGGGAGTTCTTCTTTCGTTTGGGTCAGGTG > CP009273/1243129‑1243427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |