| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,539,484 | G→A | 10.4% | pseudogene (488/951 nt) | yddK ← | pseudogene, leucine‑rich protein; putative glycoportein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,539,484 | 0 | G | A | 10.4% | 935.2 / 72.3 | 300 | pseudogene (488/951 nt) | yddK | pseudogene, leucine‑rich protein; putative glycoportein |
| Reads supporting (aligned to +/- strand): ref base G (148/118); new base A (16/15); total (165/135) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 311 total aligned reads displayed.
ACCTGCAACAATATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGATTG > CP009273/1539336‑1539633 | tGCAACAATATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCatt > 1:734156/1‑150 (MQ=255) caacaaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattat > 1:3756953/1‑150 (MQ=255) caacaaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattat < 1:3266427/150‑1 (MQ=255) aacaaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattatt < 1:625700/150‑1 (MQ=255) caaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattattat > 2:881085/1‑150 (MQ=255) caaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACattattat < 1:408296/150‑1 (MQ=255) aaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattattatt > 2:290776/1‑150 (MQ=255) atCAGTTTATTGATTATTGATGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCAt < 2:2747669/150‑1 (MQ=255) cAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAg < 2:400243/150‑1 (MQ=255) gTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGat > 2:775508/1‑150 (MQ=255) aaTTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGatata > 1:3884960/1‑150 (MQ=255) gATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATAtgtg > 2:662596/1‑150 (MQ=255) gATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATAtgtg > 2:201547/1‑150 (MQ=255) aTTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATgtgt > 1:2708571/1‑150 (MQ=255) aTTATGGCTGAGAGTCAGGTATTGCAGCCAATCGCAAGAATCAAAATGCACAAACTCAAGTAAATTATGAGACGCACAAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGATCATTAATATTCATAGATATATttgt > 2:432827/1‑150 (MQ=255) ttATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTa < 1:2399187/150‑1 (MQ=255) tATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTaa > 2:1323294/1‑150 (MQ=255) aTGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAAt > 2:4180044/1‑150 (MQ=255) ggCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATAc < 2:3959782/150‑1 (MQ=255) gCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGAATTATTATTAATAGATATATGTGTTATACt > 2:3668338/1‑150 (MQ=255) aTTCAGGTATTGCAGCCATTCGCAAGATTCTAATAGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACAtt > 2:4369448/1‑150 (MQ=255) tCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCGGAGAGGATTATTATTCATGGGTATATGGGTAATAGTTTCATGTc > 1:3821734/1‑150 (MQ=255) aTTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCtt < 1:3165907/150‑1 (MQ=255) aTTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCtt < 2:1495728/150‑1 (MQ=255) ttGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTg < 1:366408/150‑1 (MQ=255) cAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAgg > 1:3226000/1‑150 (MQ=255) aGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGa > 2:2430693/1‑150 (MQ=255) gCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGaa > 2:2287823/1‑150 (MQ=255) gCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGaa < 2:1195816/150‑1 (MQ=255) ccATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGaaa > 2:678578/1‑150 (MQ=255) ttCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAAtt > 2:2174729/1‑150 (MQ=255) ttCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAAtt > 1:4909036/1‑150 (MQ=255) cGCAAGATTATAATTGCACAAACTCTAGTTGATTATTTGCCGCACTAAAAAAAGTAACTGATGAAAGCCTATCTATATAAATATTTCTGAGAGCATTATAATTCATAGATATATTTTTAATACATACATTTCAGCCTTTAGGAAAAATTa > 2:2648720/1‑150 (MQ=255) cAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTAtt < 2:2046037/150‑1 (MQ=255) cAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTAtt < 1:1136226/150‑1 (MQ=255) aaGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTg > 1:1419324/1‑150 (MQ=255) aaGAATCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAATCATATCTATATAAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTATTCCATGAGGAAAATTTAtat > 2:3265093/1‑148 (MQ=255) aGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGa > 1:3075696/1‑150 (MQ=255) aGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGa < 1:662596/150‑1 (MQ=255) aTTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACt > 1:1367708/1‑150 (MQ=255) aTTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACt > 2:3798363/1‑150 (MQ=255) ttGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGc < 1:4617717/150‑1 (MQ=255) cacaAACTCTAGTTGATTATGTGCCGCACTAAACTAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCAtt < 1:5021452/150‑1 (MQ=255) cacaAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCAtt < 1:243157/150‑1 (MQ=255) aaCTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTa > 1:2338195/1‑150 (MQ=255) tctAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTc > 1:4282534/1‑150 (MQ=255) tctAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTc > 2:2978478/1‑150 (MQ=255) ctAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCa > 1:254232/1‑150 (MQ=255) tAGTTGATTATGTGCCTCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAg < 2:4551601/150‑1 (MQ=255) tAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAg < 1:1340792/150‑1 (MQ=255) gTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGACAATTTATTGACTCAATAGCATTACTATTCAGAc > 2:3524124/1‑150 (MQ=255) ttGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACt < 2:148914/150‑1 (MQ=255) gATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTa > 1:2105453/1‑150 (MQ=255) aTTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAg > 1:4885605/1‑150 (MQ=255) ttATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGc < 2:2934047/150‑1 (MQ=255) gtgCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTa < 2:5239243/150‑1 (MQ=255) tgCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTAc < 2:3351394/150‑1 (MQ=255) ccGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTTAGGAAAATTTATTGACTAAAGAGAATTACTATTCAGACTTAGCTTTACGa > 2:1182595/1‑150 (MQ=255) ccGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGa < 2:3862129/150‑1 (MQ=255) cGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAg > 1:1909057/1‑150 (MQ=255) cGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGAATTAGCTTTACGAg > 1:525284/1‑150 (MQ=255) aaaaTAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATc < 1:2919065/150‑1 (MQ=255) aaGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgt > 2:2044028/1‑150 (MQ=255) aaGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGATTTACGAGTCTATCGTAgt > 2:4645915/1‑150 (MQ=255) aaGTAACTGATGAAAGACTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGAATTACTATTCAGACTTAGCTTTAAGAGTCTATCGTAgt > 2:5110119/1‑150 (MQ=255) aggaaCTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgtt < 1:3421945/147‑1 (MQ=255) aGTAACTGATGATAGCCTATATATATCAATTTTTCTGAGAGCATTATTATTGATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgtt < 1:2841391/150‑1 (MQ=255) aGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgtt < 2:4993582/150‑1 (MQ=255) tAACTGATGAAATCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttgg < 2:2706140/150‑1 (MQ=255) tAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttgg < 2:902728/150‑1 (MQ=255) tAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttgg < 2:4456331/150‑1 (MQ=255) tAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttgg < 2:103992/150‑1 (MQ=255) tAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttgg > 2:483463/1‑150 (MQ=255) aCTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttggtt < 2:91090/150‑1 (MQ=255) aCTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttggtt > 2:3280020/1‑150 (MQ=255) gattaAAGCCTATCTATATAAATATGTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGATGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCa < 2:2466394/150‑1 (MQ=255) gatgaAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCa > 1:4249206/1‑150 (MQ=255) tgaAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATc > 2:821778/1‑150 (MQ=255) cagccactctacAACAATAAATCCGAGAACATTAGTATACATAGATATATGTGTAATACTTACAGTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCaaa < 2:3086339/143‑1 (MQ=255) aaGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCaaa > 2:5159443/1‑150 (MQ=255) aGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTCTCGTAGTTGGTTGCATCaaaa > 2:3270749/1‑150 (MQ=255) ctatctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgt > 1:3345151/1‑150 (MQ=255) ctatctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgt > 1:2291236/1‑150 (MQ=255) tatctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgtg < 2:1775231/150‑1 (MQ=255) atctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgtgt < 1:858028/150‑1 (MQ=255) atctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgtgt < 2:4077281/150‑1 (MQ=255) ctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGa > 1:2226098/1‑150 (MQ=255) atatCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAAt < 1:3298353/150‑1 (MQ=255) tatCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAAtt < 1:4736674/150‑1 (MQ=255) atCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTg < 2:2386575/150‑1 (MQ=255) aaTATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGtt > 1:1261834/1‑150 (MQ=255) aaTATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGtt > 2:1667740/1‑150 (MQ=255) aaTATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGtt > 1:3167009/1‑150 (MQ=255) ttCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTtattat < 1:1802724/150‑1 (MQ=255) tGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCaa < 1:1590019/150‑1 (MQ=255) gagaGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAg < 2:4482490/150‑1 (MQ=255) gagaGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAg > 1:3523666/1‑150 (MQ=255) gagCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGAt < 1:4500394/150‑1 (MQ=255) agCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGAtt < 1:2972010/150‑1 (MQ=255) gCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGATTg < 2:1425762/150‑1 (MQ=255) | ACCTGCAACAATATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGATTG > CP009273/1539336‑1539633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |