| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 161,068 | A→C | 9.0% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 161,068 | 0 | A | C | 9.0% | 372.4 / 7.8 | 191 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (75/94); new base C (7/15); total (82/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 193 total aligned reads displayed.
TGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160922‑161217 | gtggTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAg < 1:1052616/148‑1 (MQ=255) gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAg > 1:5152491/1‑150 (MQ=255) aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCGgc > 1:1426535/1‑150 (MQ=255) gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgc > 1:3937381/1‑150 (MQ=255) gCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcgc > 2:3384213/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:616710/1‑150 (MQ=255) agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACgggg > 2:5029789/1‑147 (MQ=255) ttaaaGGGCTTTATCCCAAAAATGTCGGGCCGGCCGACCGGGCAAATCCTGCACCGACGCGAGGTACTAAAATTTATTCGTATGTTTGTTTTTCCCCCTCTCCGTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTtcaccct < 1:267760/148‑1 (MQ=255) tgggCGTTATCCCAACCATGTCTGGCCGGACGACCCGGCAAATACTGCACCTACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTtcaccctcacc < 2:193693/149‑1 (MQ=255) ggggGTTATCCCAAACATGTCTGGCCGTACGACCCGTAAATTACTGCACCTACGCGACGTACTAAAATTTATTCTTATGTTTTTTTTACTCCATTTCCCTGGGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTtcaccctcaccc < 1:1751441/150‑1 (MQ=255) ggatttATCCCATCCAGGTCTGGCCGGACGACCCGGCAAATTCTGCTCCGACTCGATGGACGAAAAAGTATTCGTAAGGTTGTTTTTGTCCCTCTCGCTGTGGTAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTcacactcaccct < 2:1556202/146‑1 (MQ=255) ggCTTTATCCAAAAATTGTCTGGCCGGCCGACCCGGAAAATACTGCACCTACGCAACGTACTAAAATTTATTCTTAAGGTGGTTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTcaccctcaccct < 1:1636152/150‑1 (MQ=21) ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtgacccgcaccca > 1:1553850/1‑149 (MQ=255) ggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGgctccctcacccg > 2:3195280/1‑149 (MQ=255) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACAACCaaaa > 1:4278211/1‑149 (MQ=255) tATCCAAAACTTTTCTGGCGGGACCCCCCGCAAAATCCTGCACCGACGCGACGGACTAAAATTTATTCGTATGGTTGTTTTTCTCCCTCTCCCTGGGGGAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAAccc < 1:872802/150‑1 (MQ=255) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCAGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTAACCCACACCCAAACCCactc > 2:4880300/1‑150 (MQ=38) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCGCCCACACCCCAAACCactc > 1:2756719/1‑150 (MQ=38) aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGGCCCGCACCCAAAcccaaacccg > 1:2527954/1‑143 (MQ=38) aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGGACCCTAACCCACTccca > 1:3209367/1‑149 (MQ=255) aTGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCGCACCCTAACCCACTCCCACaa > 1:1230215/1‑150 (MQ=255) cTGGCCGGACGACCCGGCAAATCCTCCACCGCCGCGACGGACGAAAATGTATTCGTATGGTTGGTTTACACCCTCCCCCTGTGGTTGCGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga < 1:3157579/150‑1 (MQ=255) cTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCGCACCCGAACCCACACCCACAAGGga > 1:1767924/1‑150 (MQ=38) cTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCCCACCCACACCCACACCCCCAAaggg > 1:509332/1‑149 (MQ=37) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCGAACCCACACCCTCAAggggg > 2:174463/1‑148 (MQ=255) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCGCCCGCACCCAAACCCACTCCCTCAAGGgag > 1:1620346/1‑150 (MQ=38) ccGGACGACCCGGCAAATACTGCACCGACGCGACGTACGAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgg < 1:3487768/150‑1 (MQ=255) gccgacCCGCAAAATCCTCACCCGACGCGCCGTACTAAAATTTTTTCGTAGGTTTGTTTTACTCCCTCTCCTTGTGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 1:190722/148‑1 (MQ=255) gacgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCTAACCCACACCCACAAGGGTGAggggt > 2:4694887/1‑149 (MQ=38) actacCCGGCAAATCCGGCACCTCCGCGACGGACTAAAAAGTATTCGTACTGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGTGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc < 1:4680987/147‑1 (MQ=37) acgacCCGGCAAATACTGCACCGCCGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAc < 2:2014613/150‑1 (MQ=255) cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCAACCAAAACCACACCCGCCACGGAGAGGGGGcc > 1:3057974/1‑150 (MQ=37) cccGGCAAATACCGCCCCGACGCGCCGGACGAACATGTATTCGTACGGTTGGTTTTCGCCCTCCCCCGGTGGGAGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGAt < 1:2816234/150‑1 (MQ=255) ccGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGAGACCGATc < 2:2996722/150‑1 (MQ=255) ccGGCAAATACTCCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 1:4285562/150‑1 (MQ=255) cgtcAAACACTGCACCGACGCGACGGACGAAACAGTATTCGTAAGGTTGGTTTTCGCCCTCTCCCTGTGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCg < 2:4942762/147‑1 (MQ=39) ggCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGa < 2:4503687/150‑1 (MQ=255) ggCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCGCCCGCACCCGCACCCCCACCCCCACGGGGGGGGGGGcccggggc > 1:3092957/1‑144 (MQ=25) gCAAATACTGCACCGACGCGCCGGACTAAAAATTATTCTTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGCGGGCCGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:1828729/150‑1 (MQ=38) caaaaTACTGCACCGACGCGACGGACTAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCGGTGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAg < 2:1828716/148‑1 (MQ=255) aaaTACTGCACCGACGCGACGGACTAAAAAGTATTCGAACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑a < 2:1753768/150‑1 (MQ=255) aaaTACGCCACCGACGCTCCGGACGAAAAATTATTCTTATGTTTGGTTTCCGCCCTCTCCGTGTGGGTGTGGGCCGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑a < 1:2397437/150‑1 (MQ=255) aaTACTGCACCTACGCGCCGGACTAAAAAGTTTTCGTATGGTTGGTTTACTCCCTATCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑ac < 2:4854313/150‑1 (MQ=38) aaTACTGCACCGACGCGACGGACGAAATAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCCCCCTAACCCTCTCCCGCAAGGGGGGGGGGACCGAGAGAG‑‑c‑ac > 2:195485/1‑150 (MQ=37) aaTACTCCACCGACGCGACGGACTAAAAAGTATTCGTACGGTTGGTTTTATCCCTCTCCCTGGGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑ac < 2:1391896/150‑1 (MQ=255) aaTACGGCACCGACGCGCGGGACGAAATAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGGGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑c‑ag < 2:2255796/150‑2 (MQ=255) gCACCCACGCGACGGACGAAACAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAACAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAAttt < 2:1251798/150‑1 (MQ=255) aCCGACGCGACGGACGACAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTg < 1:3319068/150‑1 (MQ=255) cgacgcgacgGACTAAATTGTTTTCGTTTGGTTTGTTTTCTCCCTAGCCCTGTGGGTTTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTgag < 1:374483/150‑1 (MQ=255) gacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCTAACCCGATCCCTCAAGGGGGAGGGGACCGAACGAG‑‑C‑ACAACTGTTgagc > 2:4341689/1‑149 (MQ=37) gacgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCGCAAGGGAGAGGGGACCCATCGAG‑‑C‑ACAAATTTTgaga > 2:4341609/1‑150 (MQ=38) acgctacgTACTAAAATGTTTTCGTAAGGTTGGTTTTCCCCCGCGCCCTGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTgagag < 1:4152733/150‑1 (MQ=255) cgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTgagaga < 2:1328034/150‑1 (MQ=255) gcgacgTACTAAAATTTATTGTTATGGTTGGTTTTCTCCCTCTCCCTGTGGTTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGat < 1:1126741/150‑1 (MQ=37) cggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGAACGTTCAACCCCACACCAACACACACCCAAAACGGGGAGGGGGCCCATAGAGAAC‑ACAATTTTTgagtaaact > 2:2130329/1‑144 (MQ=16) ggacgAAAAAGTTTTCGTAAGGTTGGTTTACTCCCTCTCCCGGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATAtctt < 1:1750658/150‑1 (MQ=255) gacgAAAATGTATTCGTAAGGTTGGTTTTCTCCCTCCCCGGGGGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATAtcttc < 1:2163958/150‑1 (MQ=255) gacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCACAAACCAAAACCACAAAGGAGAGGGGACCCAAAGAG‑‑CAACAAAATTT‑AGTGATAtcata > 1:721177/1‑147 (MQ=16) gacgAAAAAGTAGTCGTAAGGGTGGTTTTCTCCCTCTCCCGGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATAtcttc < 2:226721/150‑1 (MQ=255) gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCGAACCCACACCCACAAAGGAGAGGGGACCCATCGAG‑‑C‑ACAAAATTTGATAGatataatatta > 2:377091/1‑143 (MQ=25) gAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAAGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCAAACCCACACCCACAAGGGAGAGGGGACCGATCCAC‑‑C‑ACAAATTTTGAGAGATAacttcatc > 2:1514696/1‑150 (MQ=37) aaaaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCAAACCCGAACCCACTCCCAAAAAGGATAGGGGACCGAACGAG‑‑C‑ACAAATTTTGAGAGATAtattcttaa > 1:4467205/1‑148 (MQ=25) aaaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCAACCAAAACCAAAACCACACCCAAAAAGGAGATGGGACCGATAGAC‑‑A‑ACAAAATTTTATATATAtattattattt > 2:4438563/1‑146 (MQ=12) aaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTc < 2:2558853/150‑1 (MQ=255) aaGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACCCCCAAACCCTCTCCCACAAGGGAGAGGGGCCCGATCGAG‑‑C‑CCAAAGTTTGAGAGATATATTCTTCTGta > 2:2999250/1‑149 (MQ=37) aGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGGTGACCCACCCCCGAAACCAATACCTCAAGGGGGAGGGGACCCATAGGGC‑C‑CCAAATTTTG‑GAGATAtattcttagtggg > 2:4784844/1‑144 (MQ=16) aGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCt < 2:2977902/150‑1 (MQ=255) ttATTCGTAAGGTTGGTTTTCTCCCTCTCCCGGGGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:1569504/149‑1 (MQ=255) aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACAACCAAACCCACTCCCACAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGATATATATTAATCTGTCTTGt > 2:806010/1‑150 (MQ=37) aTTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCAACCGCACCCAAAACCTCTCCCACAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAAATTTTAGAGATATATTATTATGTCTTGt > 2:1523956/1‑150 (MQ=37) cGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:3937381/150‑1 (MQ=255) cGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCACTCCCACAAGGGGGAGGGGACCGATCGAG‑‑C‑ACAAATTTTTTGATATATATTATTAAGTATTTTAAc > 1:2881601/1‑150 (MQ=25) gTACGGTTGGTTTTCCCCATCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:796322/150‑1 (MQ=255) gTACGGTTGGTTTTCACCCTCTCCGTGGGGGTGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 1:796549/150‑1 (MQ=255) ttggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCAAAACCTATACCGCAAGGGTGAGGGGACCGATCGAG‑‑C‑CAAAATTTTTAGAGATATCTTCTTATGTATTTTAAAAgaataa > 2:1287431/1‑150 (MQ=25) ggttTACTCCCTCTCCCTGTTGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 2:188754/150‑1 (MQ=255) ctccctctccctGGGGGTGTGGTCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAt < 2:77583/150‑1 (MQ=255) tccctcaccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATc < 2:1904190/150‑1 (MQ=255) ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCCCGGTCACCCGCACCCAAACCCACACCCTCAAGGGAGTGGGGTCCGATCGCT‑‑C‑CCAAATGTTGTGAGATATATTAGTCTGTCGTTTAAAAGAAGAACAGaaaaaac > 2:3423446/1‑147 (MQ=19) ctccctGTGGGATCGGGCCGGGGGGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 2:2406959/150‑1 (MQ=255) ccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGAAAATCGGGCttt < 1:1589424/150‑1 (MQ=255) ccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCACCCAAAACCACACCCACAAGGGGGAGGGGACCCTGCGCG‑‑C‑ACAAAATTTTCGTGAAAAAATATTATGTCATGTAACAGTAGACAAGAAAATAGGGCgtt > 2:4378399/1‑150 (MQ=12) cctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCCCACCCAAAACCACTCCCACAAGGGGGCGGGGCCCCTTCCTG‑‑C‑ACAAAATTTGTGAGATATCATATTATGTCTTGGAACATAAGTACACAAAATCGGGCgttt > 2:4049702/1‑150 (MQ=19) cctGGGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:509332/150‑1 (MQ=255) tgtgGGAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAATAACAGAAAATCGGGCTTTTgc < 1:1454952/150‑1 (MQ=255) tgGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCCAAAACCTCACCCGCAAGGGGGTGGGGGCCCCTCGGG‑‑C‑ACAAATTTTTTGAGGTATATTATTCTGTGTTGTAAAAGCAGAAAAGCAAATCGGGCTTTTtcgg > 2:1905728/1‑149 (MQ=255) agtgggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGa < 1:4906747/147‑1 (MQ=255) agGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAat < 2:2962018/150‑1 (MQ=255) gggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCACGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:4115143/150‑1 (MQ=255) gggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:2066970/150‑1 (MQ=255) ggCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:820246/150‑1 (MQ=255) ggCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCGACCCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:3566270/150‑1 (MQ=255) ggCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 1:3566043/150‑1 (MQ=255) ggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:1668328/150‑1 (MQ=255) ggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:1620346/150‑1 (MQ=255) gCCGGGGGGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt < 2:3693648/150‑1 (MQ=255) ccGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCGCCCACAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 1:3959733/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCTATCCCACAAGGGAGAGGGGACCCATCGAG‑‑C‑ACAAAATTTGAGAGATAAATTATTATGTCATTTAAAACAAGAACATAAAAACAGGCTTTTTCGCCAGAATATTTCg > 2:4146565/1‑150 (MQ=255) gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:57680/150‑1 (MQ=255) gccATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:1954365/148‑1 (MQ=255) | TGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAG‑‑C‑ACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160922‑161217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |