| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,491,075 | C→A | 5.2% | D234Y (GAT→TAT) | alaC ← | valine‑pyruvate aminotransferase 3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,491,075 | 0 | C | A | 5.2% | 1049.8 / 25.4 | 277 | D234Y (GAT→TAT) | alaC | valine‑pyruvate aminotransferase 3 |
| Reads supporting (aligned to +/- strand): ref base C (127/135); new base A (11/4); total (138/139) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.84e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 287 total aligned reads displayed.
CACCTGCAACGGCGTAAAGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGG > CP009273/2490926‑2491224 | cACCTGCACCGGCGTAAAGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATc < 2:2231677/150‑1 (MQ=255) cTGCAACGGCGTAAAGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATcgcg > 2:5086666/1‑150 (MQ=255) cAACGGCGTAAAGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGc < 2:2524980/150‑1 (MQ=255) cGGCGTAAAGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCAcc > 1:713997/1‑150 (MQ=255) ggCGTAAAGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCAccc > 2:363558/1‑150 (MQ=255) aaGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTAcc > 1:41983/1‑150 (MQ=255) aaGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTAcc > 2:2794415/1‑150 (MQ=255) gTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGc > 2:2125006/1‑150 (MQ=255) tGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCa < 2:1139420/150‑1 (MQ=255) gCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCAt < 2:1081889/150‑1 (MQ=255) aaTCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTg > 1:2687135/1‑150 (MQ=255) aTCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGa > 2:4034852/1‑150 (MQ=255) gATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGgcg > 2:1222234/1‑150 (MQ=255) gATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGgcg < 2:4283635/150‑1 (MQ=255) gATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGgcg > 1:3396931/1‑150 (MQ=255) aTAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGgcgc > 1:4746073/1‑150 (MQ=255) tAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCt > 1:634105/1‑150 (MQ=255) aGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCtt < 1:4702648/150‑1 (MQ=255) gCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCttt < 2:4651671/150‑1 (MQ=255) gCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCttt > 2:1838604/1‑150 (MQ=255) tttAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTTATGAACTCGACTGCCACATCGCGTGAACCCGGTACCTGCATAATTGACGGCGCTTTCCa < 2:1056349/150‑1 (MQ=255) tttAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCa < 1:3150579/150‑1 (MQ=255) tttAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCa < 1:3150341/150‑1 (MQ=255) tttAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCa < 2:2019130/150‑1 (MQ=255) ttAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGATTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAg > 2:3471511/1‑150 (MQ=255) gCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAg < 2:3396281/150‑1 (MQ=255) gCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAg < 1:3108433/150‑1 (MQ=255) gCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAg < 2:2268585/150‑1 (MQ=255) gCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAg < 1:4909787/150‑1 (MQ=255) ccAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGa > 1:2713408/1‑150 (MQ=255) cAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGAc < 2:479535/150‑1 (MQ=255) cAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGAc < 2:479753/150‑1 (MQ=255) cAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATAGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGAc > 1:972257/1‑150 (MQ=255) aGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACg < 1:3707430/150‑1 (MQ=255) ggCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGat < 1:1745154/150‑1 (MQ=255) ggCGCTGACCAGCGATTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCATTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGat < 2:2667347/150‑1 (MQ=255) cgcTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGatat > 1:4550173/1‑150 (MQ=255) cgcTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGatat < 1:890079/150‑1 (MQ=255) gcTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATc < 1:4458635/150‑1 (MQ=255) gcTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATc < 2:4353886/150‑1 (MQ=255) gACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGc > 2:3099346/1‑150 (MQ=255) cAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATa < 2:1532584/150‑1 (MQ=255) cAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATa < 2:4991068/150‑1 (MQ=255) cAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATa > 1:1507896/1‑150 (MQ=255) aGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACATCGTAAAGAACTCGACTGCCACATCGCGTGCAACCGGTACCTGCATAATTGACGGCGCTTTACAGCCATCGTAGACGATATCGGCATAg > 2:1338612/1‑150 (MQ=255) aGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATAGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAg > 1:4058481/1‑150 (MQ=255) cGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGc > 2:713867/1‑150 (MQ=255) gTTTTGTTGCCAACCATACAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGcc < 2:4893973/150‑1 (MQ=255) ttttGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCa < 1:107528/150‑1 (MQ=255) ttttGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCa < 1:1249569/150‑1 (MQ=255) tgttgCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGt < 1:2469171/150‑1 (MQ=255) tgttgCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGt < 2:418451/150‑1 (MQ=255) tgttgCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGAGATCGGCATAGGCCAGGt > 1:3679174/1‑150 (MQ=255) gttgCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTc > 1:2893448/1‑150 (MQ=255) gCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATg < 1:4582251/150‑1 (MQ=255) ccAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATgg < 2:2399964/150‑1 (MQ=255) ccATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGAGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGacca > 1:2190322/1‑150 (MQ=255) aGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGca > 1:670023/1‑150 (MQ=255) aGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGca > 2:2476889/1‑150 (MQ=255) ccGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGcaca > 1:2840412/1‑150 (MQ=255) aTACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCg < 2:4536029/150‑1 (MQ=255) gCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGc < 1:4312507/150‑1 (MQ=255) gCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGttt < 2:400500/150‑1 (MQ=255) gCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGttt < 2:3648042/150‑1 (MQ=255) ccGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCTCCCGGTACCTGCATAATTGAGGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCg < 1:576927/150‑1 (MQ=255) ccATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTCCCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGGCCACCAGCACATCGTAGCGTTTCGCCa > 2:1934847/1‑150 (MQ=255) ccATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGAAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCTccc > 2:4309093/1‑149 (MQ=255) tgttgtAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCcgcg > 2:3955809/1‑150 (MQ=255) tAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCact > 2:511141/1‑150 (MQ=255) aGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCacta > 1:3973340/1‑150 (MQ=255) cTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCactact < 1:281322/150‑1 (MQ=255) ttttCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACtt < 1:2215849/150‑1 (MQ=255) tCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACttttt > 2:4261706/1‑150 (MQ=255) gACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCg > 1:2115816/1‑150 (MQ=255) gACAGCGTAAAGAACTCGACTGCCACATAGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCg < 1:3562625/150‑1 (MQ=255) aCAGCGTAAAGAACTCGACTGCCACATAGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCga > 1:5075421/1‑150 (MQ=255) tAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACt < 2:494062/150‑1 (MQ=255) aaGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTcc < 1:5132064/150‑1 (MQ=255) aaGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTcc < 1:2541344/150‑1 (MQ=255) aGAACTCGACTGCCACATCGCGTGCACCCGGGACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCa < 2:3126891/150‑1 (MQ=255) gAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAg > 2:4106457/1‑150 (MQ=255) aaCTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGt > 2:3818432/1‑150 (MQ=255) aCTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGtt > 1:203868/1‑150 (MQ=255) aCTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTAGAAGAACTCCAGtt < 2:3499528/150‑1 (MQ=255) cTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTc < 2:83871/150‑1 (MQ=255) cTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTc < 1:3166743/150‑1 (MQ=255) cTCGACTGCCACATCGCGTGCACCCGGTACCCGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTc < 1:536153/150‑1 (MQ=255) cGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCa < 1:1011849/150‑1 (MQ=255) cTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGc > 2:4449105/1‑150 (MQ=255) tGCCACATCGCGTGCACCCGGTACCTGCAGAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGGCATGGACCACCCGCACATCGTAGCCTTTCGCCAGCGCCACTACTTTTTCGAATAACTCCAGTGCCACGCa > 2:4901103/1‑150 (MQ=255) gCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCAt > 1:3301751/1‑150 (MQ=255) ccACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCAtt < 1:4034852/150‑1 (MQ=255) cacaTCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGAGCCACTACTTTTTCGAAGAACTCAAGTTCCACGCATTg > 2:3768445/1‑150 (MQ=255) cacaTCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGAGATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTg > 2:3357834/1‑150 (MQ=255) acaTCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTgc < 1:4212222/150‑1 (MQ=255) acaTCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTgc < 2:3340210/150‑1 (MQ=255) caTAGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTgcg > 1:2339450/1‑150 (MQ=255) caTAGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTAGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTgcg < 2:1804548/150‑1 (MQ=255) tCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGcgcg < 1:4175482/150‑1 (MQ=255) cgcgTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCgg > 2:1719660/1‑150 (MQ=255) | CACCTGCAACGGCGTAAAGGTGCCGTAATCGTGATAGCTTTTAATACGAGCCAGGGCGCTGACCAGCGTTTTGTTGCCAACCATAAAGCCGATACGCCAGCCCGCCATGTTGTAGCTTTTCGACAGCGTAAAGAACTCGACTGCCACATCGCGTGCACCCGGTACCTGCATAATTGACGGCGCTTTCCAGCCATCGTAGACGATATCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGG > CP009273/2490926‑2491224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |