| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,644,397 | A→T | 5.9% | L417* (TTG→TAG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,644,397 | 0 | A | T | 5.9% | 1010.6 / 37.3 | 286 | L417* (TTG→TAG) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (112/157); new base T (6/11); total (118/168) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 295 total aligned reads displayed.
TGTTAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCGGAAGT > CP009273/2644248‑2644546 | tgtTAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCa < 1:1261857/150‑1 (MQ=255)tgtTAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCa > 1:4258766/1‑150 (MQ=255) gcgcGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCt < 1:4321144/150‑1 (MQ=255) gcgAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCttt < 1:4923539/150‑1 (MQ=255) gAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTAc < 2:4509737/150‑1 (MQ=255) gAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTAc > 2:1516602/1‑150 (MQ=255) atatGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCg < 1:86260/150‑1 (MQ=255) tatGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGt > 2:3802537/1‑150 (MQ=255) tatGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGt < 2:2555337/150‑1 (MQ=255) tGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCt > 2:3514497/1‑150 (MQ=255) gCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTg > 1:1823636/1‑150 (MQ=255) ccACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGc > 1:2314205/1‑150 (MQ=255) acaTACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCAt > 1:1930605/1‑150 (MQ=255) aTACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCa < 1:384713/150‑1 (MQ=255) tACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCAc < 1:5171122/150‑1 (MQ=255) ggTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTAACCGTCTGCATCACgcag > 2:2859930/1‑150 (MQ=255) ttGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACgcagca > 2:4428149/1‑150 (MQ=255) tGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCaa > 2:2034592/1‑150 (MQ=255) tGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCaa > 1:665676/1‑150 (MQ=255) gCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCaaa < 1:1589568/150‑1 (MQ=255) ccGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAAc < 2:1611270/150‑1 (MQ=255) cGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAAcc < 1:483561/150‑1 (MQ=255) cATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACACAGCAAACCAt < 1:3748379/150‑1 (MQ=255) cATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCAt < 1:1483275/150‑1 (MQ=255) aTTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCAtt > 1:3059232/1‑150 (MQ=255) aTTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCAtt > 1:4625428/1‑150 (MQ=255) ttGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTg < 2:891134/150‑1 (MQ=255) gCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAg < 2:3160766/150‑1 (MQ=255) tATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGa > 1:3893406/1‑150 (MQ=255) aTCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGAt < 2:1134661/150‑1 (MQ=255) aTCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGAt > 2:2318161/1‑150 (MQ=255) aTCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGAt < 2:1965589/150‑1 (MQ=255) gAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTAc > 1:1446071/1‑150 (MQ=255) gCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGttt > 1:1339745/1‑150 (MQ=255) aGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCAc > 2:74432/1‑150 (MQ=255) gTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCt < 1:2763143/150‑1 (MQ=255) aaaGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTGTCACCTgg > 2:781359/1‑150 (MQ=255) tGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGa > 2:3122965/1‑150 (MQ=255) tAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaa > 1:4962477/1‑150 (MQ=255) tAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATaa < 1:3033784/150‑1 (MQ=255) agGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACAGTCTGCAGCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGa > 2:3872466/1‑150 (MQ=255) agGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGa < 2:4862240/150‑1 (MQ=255) ccATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATcg < 2:5200390/150‑1 (MQ=255) ccATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATcg > 2:3090512/1‑150 (MQ=255) cATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATcgc > 2:3414228/1‑150 (MQ=255) aTTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATcgcg > 2:3016042/1‑150 (MQ=255) aTTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATcgcg > 1:3983169/1‑150 (MQ=255) tcCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTggg < 1:2978305/150‑1 (MQ=255) tcCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTggg < 2:3131512/150‑1 (MQ=255) cGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGcc < 1:2794729/150‑1 (MQ=255) gCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACAGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCaa < 1:357937/150‑1 (MQ=255) gACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACa < 1:4723641/150‑1 (MQ=255) cTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATg < 2:3258240/150‑1 (MQ=255) acgCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAAc < 2:4320050/150‑1 (MQ=255) cgCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACt > 1:5002704/1‑150 (MQ=255) cTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGt > 2:3504587/1‑150 (MQ=255) tCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGtt > 1:3087483/1‑150 (MQ=255) ccTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGttt < 1:3337733/150‑1 (MQ=255) ccTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGttt < 1:235166/150‑1 (MQ=255) gAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCt > 2:4512673/1‑150 (MQ=255) gAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCt > 1:2916976/1‑150 (MQ=255) gTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCtat < 2:4079004/150‑1 (MQ=255) cTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGcc > 2:3108985/1‑150 (MQ=255) cTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGcc > 2:3109089/1‑150 (MQ=255) gCCCATCGGGTTTACTCACGTCTTACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACTCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTg < 2:1271258/150‑1 (MQ=255) gCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTg < 2:639517/150‑1 (MQ=255) gCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTg > 2:4720912/1‑150 (MQ=255) cccATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTgg < 2:1199871/150‑1 (MQ=255) cATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGgcg > 1:55515/1‑150 (MQ=255) cATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGgcg < 2:673724/150‑1 (MQ=255) cGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGgcgcgc > 2:2004434/1‑150 (MQ=255) ggTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCa < 1:747453/150‑1 (MQ=255) ggTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCa < 1:319092/150‑1 (MQ=255) ggTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCa > 1:4382636/1‑150 (MQ=255) ggTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCa < 2:4043451/150‑1 (MQ=255) gTTTAATCACGTCTAACTTGATGGGTTGATTGGGCTACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCAACTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACGGTTTGCTATAGCCTGGCGCGCCAg > 2:2475867/1‑150 (MQ=255) tttAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGc > 1:3741411/1‑150 (MQ=255) tttAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGc < 1:1305658/150‑1 (MQ=255) ttAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCa < 1:2687815/150‑1 (MQ=255) aTCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATg < 1:3454460/150‑1 (MQ=255) tCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGt > 2:3739534/1‑150 (MQ=255) cGTCTAACGTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTaa < 2:58355/150‑1 (MQ=255) cTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAAtt < 2:2582633/150‑1 (MQ=255) aaCTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCt < 2:3364147/150‑1 (MQ=255) aCTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTg < 2:1039133/150‑1 (MQ=255) aCTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCAAGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTg > 1:681461/1‑150 (MQ=255) gATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTaa > 2:3809818/1‑150 (MQ=255) tGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGt < 2:1660075/150‑1 (MQ=255) gggTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTc < 1:261739/150‑1 (MQ=255) gTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCa < 1:1034652/150‑1 (MQ=255) gTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCa < 2:5035044/150‑1 (MQ=255) ttGATTGGGCTACGCTTTACAGTCTGCATCACGCAGCAAACCATTGAGGATTACGGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAATAACTGTTTGCTAGAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAg < 2:4218173/150‑1 (MQ=255) tGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAgc < 2:1823636/150‑1 (MQ=255) tGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAgc < 1:619179/150‑1 (MQ=255) gATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGGAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAgcg > 1:4566606/1‑150 (MQ=255) gATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAgcg > 1:420175/1‑150 (MQ=255) gggCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCgg < 1:514003/150‑1 (MQ=255) ggCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCGGa < 1:2333092/150‑1 (MQ=255) ggCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCGGa < 1:2805693/150‑1 (MQ=255) aaCGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCGGAAGt > 1:1008321/1‑150 (MQ=255) | TGTTAGCGCGAATATGCCACATACCGGTTGCCGCATTGCTATCGAGTGGCCAGGTAAAGTGGTAGAGGCCATTCTCCGGCTGACTAACGACGCTCCTGAGTACCTGCCCATCGGGTTTAATCACGTCTAACTTGATGGGTTGATTGGGCAACGCTTTACCGTCTGCATCACGCAGCAAACCATTGAGGATTACCGTTTCACCTGGGCGATAAAGATCGCGTGGGCCAAACATGAAAAACTGTTTGCTATAGCCTGGCGCGCCAGCAATGTTAAATTCTGCTAAGTCCAGCGCCGGAAGT > CP009273/2644248‑2644546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |