| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,665,296 | C→T | 6.7% | S238L (TCG→TTG) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,665,296 | 0 | C | T | 6.7% | 1154.5 / 46.9 | 330 | S238L (TCG→TTG) | hcaB | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (130/176); new base T (8/14); total (139/191) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 334 total aligned reads displayed.
CAGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAG > CP009273/2665150‑2665445 | cAGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATcgcg < 1:3362426/150‑1 (MQ=255)cAGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATcgcg < 1:1548017/150‑1 (MQ=255) cGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCgcggcg < 2:4443518/150‑1 (MQ=255) gACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCACTTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGgcgc > 2:3623528/1‑150 (MQ=255) ccTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCaa < 1:4644719/150‑1 (MQ=255) cTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCaat > 2:1080896/1‑150 (MQ=255) cTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCaat < 1:710816/150‑1 (MQ=255) gcgcGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCaataa < 1:2399445/150‑1 (MQ=255) gcgGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATc < 1:3077873/150‑1 (MQ=255) ccACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACTCCGGAGAAAATAGCCGCCATTTTACCGCTGCACTTTTTCCCGCAACCGGCGGAATTTACGTGTCCGTATGTGATGTTGACATAGCGGCGCAATAAACTCGCa > 1:3575540/1‑150 (MQ=255) cacaGGCGCTCGGGCAAAGTGAAACCTCGAGAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCAt < 2:4310947/150‑1 (MQ=255) acaGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCAtt < 2:3248181/150‑1 (MQ=255) caGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTa < 1:1281409/150‑1 (MQ=255) caGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTa < 2:1388373/150‑1 (MQ=255) gcgcTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGTAATAATCGCGCATTAAGc < 1:827838/150‑1 (MQ=255) gcgcTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGc < 1:3349313/150‑1 (MQ=255) gcgcTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGc < 1:3173450/150‑1 (MQ=255) gcgcTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGc < 1:3566002/150‑1 (MQ=255) gCAAAGTGAAACCTCGCTCATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGtgat < 2:4930688/150‑1 (MQ=255) cAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGtgatg < 1:1247605/150‑1 (MQ=255) aaGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTgatgat > 2:3370131/1‑150 (MQ=255) aGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATc < 1:3880362/150‑1 (MQ=255) gTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCa > 1:2332425/1‑150 (MQ=255) tGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTAACGCTGCAATATTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGAGCATTAAGCGGTGTGATGATCaa > 1:633547/1‑150 (MQ=255) gAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAAc > 1:2505598/1‑150 (MQ=255) gAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAAc < 1:4822069/150‑1 (MQ=255) gAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAAc < 2:2474823/150‑1 (MQ=255) aaaCCTCGATAATGCCGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACg < 2:522359/150‑1 (MQ=255) aaaCCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACg < 1:3527941/150‑1 (MQ=255) tCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTGTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGAt < 2:4363554/150‑1 (MQ=255) cGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATg > 2:2010312/1‑150 (MQ=255) aTAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGAGGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGGGTGATGATCAACGCAGATGcc > 2:4147675/1‑149 (MQ=255) aaTGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCggg < 1:4437458/150‑1 (MQ=255) cAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTa > 1:5159951/1‑150 (MQ=255) gTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGc > 2:1876613/1‑150 (MQ=255) ctctGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGa > 2:914490/1‑150 (MQ=255) ctctGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGa < 2:708595/150‑1 (MQ=255) tctGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGAt < 1:4283621/150‑1 (MQ=255) tGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTc < 2:4652846/150‑1 (MQ=255) gACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTcg < 2:2069399/150‑1 (MQ=255) gCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCgg < 1:5062277/150‑1 (MQ=255) ccGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGc > 2:4026315/1‑150 (MQ=255) ggAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCAt < 2:1839663/150‑1 (MQ=255) gagaAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCAtt < 1:1944905/150‑1 (MQ=255) gagaAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCAtt < 1:2060608/150‑1 (MQ=255) agaAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCTCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTc < 2:942603/150‑1 (MQ=255) aTTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGTGGCCGTATGTGATGTTGACATCTCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCAc < 2:2891187/150‑1 (MQ=255) aTTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCAc < 1:82668/150‑1 (MQ=255) aTTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCAc < 2:4844671/150‑1 (MQ=255) aTTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCAc < 1:1228986/150‑1 (MQ=255) cgccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGc > 2:3805934/1‑150 (MQ=255) gccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCg < 2:2936099/150‑1 (MQ=255) gccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCg > 2:3692679/1‑150 (MQ=255) ccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCgg < 1:2322336/150‑1 (MQ=255) ccATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCgg < 1:3037392/150‑1 (MQ=255) cATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggc > 2:2657792/1‑150 (MQ=255) ttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctggg > 2:4979681/1‑150 (MQ=255) ttACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctggg > 1:3470765/1‑150 (MQ=255) tgaCCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctggg < 1:1051826/148‑1 (MQ=255) tACCGCTTCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggc > 2:3052553/1‑150 (MQ=255) aCCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggct > 1:2740048/1‑150 (MQ=255) aCCGCTGCAATTTTTCCCGCAACCGGCGGATATTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggct < 1:3276916/150‑1 (MQ=255) ccGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCggctgggctg > 2:4293221/1‑150 (MQ=255) cGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGgctgggctgg < 1:3924535/150‑1 (MQ=255) cGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGgctgggctgg < 1:4434475/150‑1 (MQ=255) tGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATc > 2:477592/1‑150 (MQ=255) tGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATc < 1:3692547/150‑1 (MQ=255) aaTTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCttt < 2:1918136/150‑1 (MQ=255) aaTTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCttt > 1:165981/1‑150 (MQ=255) aaTTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCttt > 1:4547139/1‑150 (MQ=255) aTTTGTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTa < 2:4860329/150‑1 (MQ=255) tttttCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTaa > 2:830640/1‑150 (MQ=255) tttttCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTaa > 2:3456282/1‑150 (MQ=255) ttttCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAg < 2:1674595/150‑1 (MQ=255) ttCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGa < 2:3302646/150‑1 (MQ=255) tCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGaa > 2:2236393/1‑150 (MQ=255) cccGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAg > 2:3829949/1‑150 (MQ=255) cccGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAg > 2:4578440/1‑150 (MQ=255) cGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCa > 1:1769330/1‑150 (MQ=255) aCCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGAt < 2:1326738/150‑1 (MQ=255) aCCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGAt < 1:3417171/150‑1 (MQ=255) ccGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATg > 2:1580975/1‑150 (MQ=255) ccGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATg < 2:734358/150‑1 (MQ=255) cggcggATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATga < 1:4045582/150‑1 (MQ=255) ggATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaaga > 2:1763304/1‑150 (MQ=255) ggATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATgaaaga > 1:1874079/1‑150 (MQ=255) tttACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGaaaaa < 1:2876168/150‑1 (MQ=255) aCGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACg > 1:528001/1‑150 (MQ=255) ggggCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGAt < 2:3630006/150‑1 (MQ=255) ggCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCa < 2:2154877/150‑1 (MQ=255) gCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCat > 1:1000611/1‑150 (MQ=255) tATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCattatt > 2:638720/1‑150 (MQ=255) gtgATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTc < 2:5092919/150‑1 (MQ=255) tgATGTTGACATTGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCg < 1:1415911/150‑1 (MQ=255) gTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTgg > 2:2559069/1‑150 (MQ=255) tGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCg > 2:2316876/1‑150 (MQ=255) aCATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCggg < 1:4734167/150‑1 (MQ=255) aTCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCa > 2:3949000/1‑150 (MQ=255) aTCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCa > 2:2383423/1‑150 (MQ=255) aTCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGAAGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCa > 2:858613/1‑150 (MQ=255) | CAGCGACCTGCGCGGCCCACAGGCGCTCGGGCAAAGTGAAACCTCGATAATGCAGTCTCTGACGCCGGAGAAAATTGCCGCCATTTTACCGCTGCAATTTTTCCCGCAACCGGCGGATTTTACGGGGCCGTATGTGATGTTGACATCGCGGCGCAATAATCGCGCATTAAGCGGTGTGATGATCAACGCTGATGCGGGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAG > CP009273/2665150‑2665445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |