| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,422,390 | C→A | 8.4% | intergenic (‑269/‑205) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,422,390 | 0 | C | A | 8.4% | 1272.7 / 64.0 | 366 | intergenic (‑269/‑205) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| Reads supporting (aligned to +/- strand): ref base C (134/200); new base A (14/17); total (148/218) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 368 total aligned reads displayed.
TTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTAAAAGACTTGCA > CP009273/3422241‑3422539 | tGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCa < 2:5164238/150‑1 (MQ=255) cTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGt > 2:3338730/1‑150 (MQ=255) cTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACAATCCTGTGAAGTGTTTCACGt > 2:3632880/1‑150 (MQ=255) tGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGtt < 2:1780967/150‑1 (MQ=255) aTAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgt > 2:3472271/1‑150 (MQ=255) tAAATTGTTAAAGAGCAGTTGCGACGCGGCTTGCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCATGATTTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTAACGTTgtc < 2:1175121/150‑1 (MQ=255) aaTTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgtcgt > 2:5183791/1‑150 (MQ=255) aTTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgtcgtc < 1:4293520/150‑1 (MQ=255) tGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGtctc < 1:1162894/150‑1 (MQ=255) tGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGtctc < 2:2600282/150‑1 (MQ=255) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCa > 1:2138103/1‑150 (MQ=255) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCa < 1:3823913/150‑1 (MQ=255) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCaa < 2:4025482/150‑1 (MQ=255) agagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGa > 2:166964/1‑150 (MQ=255) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 2:4676499/150‑1 (MQ=255) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 1:4826318/150‑1 (MQ=255) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 1:4488498/150‑1 (MQ=255) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCGGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGgcgc > 1:2210217/1‑150 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCa < 2:203088/150‑1 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCAtt < 1:2582882/150‑1 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCAtt < 2:734005/150‑1 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGAGGCGCAtt < 1:2534921/150‑1 (MQ=255) gACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATtata < 1:3096183/150‑1 (MQ=255) aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAg < 1:1856964/150‑1 (MQ=255) cgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGa < 2:332288/150‑1 (MQ=255) ggCTTTCAGCTCACTGTAGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTAAACCCTGAATTTCAGGTTTTTTTTCTCTTCGTTGTTACTACCATCCTGTGATGTGTTTCACGTTGTCGTCTCAACGGAGGAGCATTATAGGGAt < 2:1875210/150‑1 (MQ=25) gCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATc < 2:3009769/150‑1 (MQ=255) gCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCGTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATc < 2:3771413/150‑1 (MQ=255) cTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATcc > 1:1283559/1‑150 (MQ=255) cTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATcc > 2:4103356/1‑150 (MQ=255) ttCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCa < 1:938224/150‑1 (MQ=255) tCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCaa > 2:2552803/1‑150 (MQ=255) cAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAAt < 1:3468706/150‑1 (MQ=255) gCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAAttt < 1:2695919/150‑1 (MQ=255) cACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAAtttttt < 2:711583/150‑1 (MQ=255) cgcgAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCAAATTTTTTGCACaa > 1:5136934/1‑150 (MQ=255) gcgAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCAAAAg < 1:1776833/150‑1 (MQ=255) ggTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTAtt > 2:1281710/1‑150 (MQ=255) gTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGAACAAGTAttt > 2:3821728/1‑150 (MQ=255) ggCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTAttttt < 2:4948455/150‑1 (MQ=255) ggCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTAttttt < 2:3249616/150‑1 (MQ=255) gTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTg < 2:1949215/150‑1 (MQ=255) ttACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑tt > 1:4170097/1‑150 (MQ=255) tACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑ttt < 2:2241339/150‑1 (MQ=255) tACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑ttt > 2:4259677/1‑150 (MQ=255) tACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑ttt > 1:3380221/1‑150 (MQ=255) aCGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑tttt < 1:3513641/150‑1 (MQ=255) aCGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑tttt < 2:1467825/150‑1 (MQ=255) cTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTGTTTGCACAAGTATTTTTTTGATC‑ttttttt > 1:2880590/1‑150 (MQ=255) cTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑ttttttt > 1:2112653/1‑150 (MQ=255) tttCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTc > 2:584536/1‑150 (MQ=255) tctTTCAGAGTTAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCtgttt < 1:2958474/150‑1 (MQ=255) tttCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCtgtttgt < 1:4705817/150‑1 (MQ=255) ttCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCtgtttgtt < 1:4942097/150‑1 (MQ=255) ttCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCtgtttgtt < 2:4605274/150‑1 (MQ=255) tCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTttgttg < 2:516144/150‑1 (MQ=255) tCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTttgttg < 2:2868055/150‑1 (MQ=255) agagTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTgttgtt < 1:3780328/150‑1 (MQ=255) agagTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTGTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTgttgtt > 2:803296/1‑150 (MQ=255) gagTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGttt > 1:1308856/1‑150 (MQ=255) gagTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGttt < 1:5038710/150‑1 (MQ=255) aaCCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCa < 1:1369265/150‑1 (MQ=255) aCCCTGAATTTCTGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCAc < 2:5065239/150‑1 (MQ=255) ccTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCACAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCAccc > 2:1134862/1‑150 (MQ=255) tGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCtt < 2:161728/150‑1 (MQ=255) tGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCtt > 2:2432379/1‑150 (MQ=255) gAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCttt < 1:3986330/150‑1 (MQ=255) attttCAGGATTTTTTTCTATTAGTTGTTTCGACCATCCTGTGTTGTGTTTCACGTTGTAGTCTCTTCTGAGGCGCATTATAGTGATCATAATTTTTTGCACAATTATTTTTTTGTTC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCtttt < 1:2088543/148‑1 (MQ=255) aaTTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCtttt > 2:897340/1‑150 (MQ=255) aaTTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGGTTGTTGTTTTTTCACCCtttt > 1:2804605/1‑150 (MQ=255) aaTTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCAGTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTGTTCTGTTTGTTGTTTTTTCACCCtttt > 1:3887159/1‑150 (MQ=255) aTTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCttttt < 1:1028575/150‑1 (MQ=255) ttCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCAGTCTAGGGATCCCAATTTTTTGCACAAGTTTTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTtgc > 2:1607840/1‑150 (MQ=255) aGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCAGTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTtgctgc > 2:760110/1‑150 (MQ=255) aGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTtgctgc < 2:4351153/150‑1 (MQ=255) gATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCaa > 2:3523972/1‑150 (MQ=255) tttttttCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATc < 1:2987719/150‑1 (MQ=255) tttCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGcac > 1:4918754/1‑150 (MQ=255) ttCTCTTCGTTGGTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCATCGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTATTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGcaca < 2:2894106/150‑1 (MQ=255) tctcTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGTTGCAATCGcacac < 1:2425203/150‑1 (MQ=255) gttgttCCGACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACgg < 1:841776/150‑1 (MQ=255) tgttCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTg > 2:2721915/1‑150 (MQ=255) ttCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCt < 1:3632888/150‑1 (MQ=255) ttCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCt < 1:3337708/150‑1 (MQ=255) tCCGACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCtt > 2:4791489/1‑150 (MQ=255) cGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCtttt < 2:2467680/150‑1 (MQ=255) gACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATCTTTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCtttt > 1:1596255/1‑150 (MQ=255) gACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCttttt < 1:640485/150‑1 (MQ=255) gACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCttttt > 1:724872/1‑150 (MQ=255) gACCATCCTGTGAAGTGTTTAACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCttttt > 1:3714356/1‑150 (MQ=255) gACCATCCTGTGAAGTGTATCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCttttt < 2:4237558/150‑1 (MQ=255) aCCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCtttttt > 1:3281852/1‑150 (MQ=255) ccATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATCGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGGTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTg > 2:4913618/1‑150 (MQ=255) cATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGc < 2:617724/150‑1 (MQ=255) tCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCAt < 1:574331/150‑1 (MQ=255) cTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATAc < 2:2944048/150‑1 (MQ=255) tgtgAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACt < 1:992807/150‑1 (MQ=255) tgAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTaa < 2:2110019/150‑1 (MQ=255) gAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTaaa < 1:4658867/150‑1 (MQ=255) aGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTAAAAg > 2:4371221/1‑150 (MQ=255) | TTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCACAAGTATTTTTTTGATC‑TTTTTTTCTGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACAAAACGGTGCTTTTTTGCATACTAAAAGACTTGCA > CP009273/3422241‑3422539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |