| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,469,146 | G→T | 5.6% | I218I (ATC→ATA) | yheO ← | putative PAS domain‑containing DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,469,146 | 0 | G | T | 5.6% | 1135.0 / 27.1 | 295 | I218I (ATC→ATA) | yheO | putative PAS domain‑containing DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (133/144); new base T (9/9); total (142/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 302 total aligned reads displayed.
AGCGCCTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAGCGTTTG > CP009273/3468998‑3469295 | aGCGCCTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGgaga > 2:4207381/1‑150 (MQ=255) cgcCTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATg < 2:3078624/150‑1 (MQ=255) ccTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGtt < 1:525585/150‑1 (MQ=255) ccTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGAGTGTTTGGAGATGtt > 1:3302361/1‑150 (MQ=255) cTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTc < 2:5117329/150‑1 (MQ=255) cTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTc > 2:3208964/1‑150 (MQ=255) cgcAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGATATGTTCAgg > 1:496530/1‑150 (MQ=255) cgcAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAgg < 2:437476/150‑1 (MQ=255) cAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCg < 1:3485774/150‑1 (MQ=255) cAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCg < 1:4073554/150‑1 (MQ=255) cAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCg < 1:1943271/150‑1 (MQ=255) aaCTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGt > 1:2523722/1‑150 (MQ=255) aaGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAAc < 2:1081078/150‑1 (MQ=255) aGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAAcc < 1:4507851/150‑1 (MQ=255) gCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCt < 2:4121566/150‑1 (MQ=255) cACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTg < 1:605741/150‑1 (MQ=255) ctactCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGATATGTTCAGGCGGTCAGCAACCTGGt < 1:2938534/150‑1 (MQ=255) tactCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGtt < 2:1865696/150‑1 (MQ=255) ctCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGa > 2:830874/1‑150 (MQ=255) cGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATc < 1:304995/150‑1 (MQ=255) gTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATc > 1:4284888/1‑150 (MQ=255) gTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATc > 2:3463466/1‑150 (MQ=255) ttGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCt < 1:3576403/150‑1 (MQ=255) ttGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCt < 1:1453558/150‑1 (MQ=255) tGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTTCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATATACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCtt < 1:272879/150‑1 (MQ=255) gCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCttt < 1:1678032/150‑1 (MQ=255) gCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCttt < 1:2990857/150‑1 (MQ=255) gTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACCGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTaa > 2:3943772/1‑150 (MQ=255) gTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTaa > 1:2202412/1‑150 (MQ=255) gTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCg < 1:1735528/150‑1 (MQ=255) aTGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGaa < 2:3782699/150‑1 (MQ=255) gCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGa > 1:4571501/1‑150 (MQ=255) cTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGATATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGAt < 2:1984334/150‑1 (MQ=255) tGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATc > 2:3003691/1‑150 (MQ=255) tGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATc < 1:5058528/150‑1 (MQ=255) ggCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATcc < 2:168715/150‑1 (MQ=255) cccGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCt > 1:2259450/1‑150 (MQ=255) ccGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGATATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCtt < 2:1598511/150‑1 (MQ=255) cGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCttt < 2:4993157/150‑1 (MQ=255) ggTCACCACGATGGCAAAACGCATTACTTTTCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTtc < 1:2110006/150‑1 (MQ=255) tCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTtctc < 1:958609/150‑1 (MQ=255) acGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTaga > 1:753752/1‑150 (MQ=255) cGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTagag > 1:3121238/1‑150 (MQ=255) tGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGAtt > 2:1064979/1‑150 (MQ=255) tGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGAtt > 1:1368921/1‑150 (MQ=255) ggCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTc > 2:4426882/1‑150 (MQ=255) gCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCa > 1:255167/1‑150 (MQ=255) cAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAg > 1:5068009/1‑150 (MQ=255) cAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAg > 1:2476292/1‑150 (MQ=255) aaCGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCAc < 1:3361049/150‑1 (MQ=255) gCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGAt < 2:3821114/150‑1 (MQ=255) gCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGAt < 2:2601007/150‑1 (MQ=255) gCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGAt < 2:4323279/150‑1 (MQ=255) cATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATc < 2:1431619/150‑1 (MQ=255) agtACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCt < 2:3283012/148‑1 (MQ=255) aTTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCATTCTCGTAGAGATTCAGCACGATCt > 2:2740733/1‑150 (MQ=255) ttACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTg < 2:2397921/150‑1 (MQ=255) tATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGAt > 1:2127002/1‑150 (MQ=255) tATCTGGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGAt < 2:2873188/150‑1 (MQ=255) tCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGAttt < 1:5211219/150‑1 (MQ=255) tCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCGTTCTCGTAGAGATTCAGCACGATCTGACGAttt < 2:862959/150‑1 (MQ=255) cTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGAtttt > 2:5205414/1‑150 (MQ=255) cTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGAtttt > 2:584465/1‑150 (MQ=255) ttGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGAttttt < 1:3840767/150‑1 (MQ=255) ttGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGAttttt < 2:2809408/150‑1 (MQ=255) tGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTg < 1:1776582/150‑1 (MQ=255) ccccTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGc > 2:2060770/1‑150 (MQ=255) cccTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCg > 1:1447056/1‑150 (MQ=255) cccTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCg > 2:4000798/1‑150 (MQ=255) ccTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGt < 1:3898820/150‑1 (MQ=255) aaaTCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGttatta > 1:2879725/1‑150 (MQ=255) aaTCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAg < 2:2648754/150‑1 (MQ=255) aaTCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAg < 1:860813/150‑1 (MQ=255) aaTCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAg > 1:2045233/1‑150 (MQ=255) aaTCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAg < 1:3194138/150‑1 (MQ=255) aTCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGa > 1:3088578/1‑150 (MQ=255) cGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACAt > 2:2161291/1‑150 (MQ=255) cGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACAt > 2:4809177/1‑150 (MQ=255) cGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACAt > 1:1380173/1‑150 (MQ=255) cGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACAt < 2:3596236/150‑1 (MQ=255) gCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACAtt < 2:2949378/150‑1 (MQ=255) gCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACAtt > 2:1313776/1‑150 (MQ=255) ctTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCg > 2:721999/1‑150 (MQ=255) gAACTGGCTGATGTAGAGATAGACAGTGTGTTTGGATATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATc < 2:2780292/150‑1 (MQ=255) gATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCAc < 1:2373670/150‑1 (MQ=255) aTGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCTAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTTCGATCGGCATTCAct > 2:4098819/1‑150 (MQ=255) aTGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCAct < 1:127136/150‑1 (MQ=255) tGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCActt < 2:1368026/150‑1 (MQ=255) gaTAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGACACATTGCGATCGGCATTCACTTCTTCGa < 1:1547679/150‑1 (MQ=255) aTAGACAGTGTTTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTAGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGAt < 2:1542776/150‑1 (MQ=255) aCAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTg < 1:1351911/150‑1 (MQ=255) aGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGaa > 1:1028148/1‑150 (MQ=255) tgtgtTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACt < 1:4728725/150‑1 (MQ=255) gtTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCa < 1:3437823/150‑1 (MQ=255) tttGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAg > 2:4565549/1‑150 (MQ=255) ttGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAGc > 1:2425691/1‑150 (MQ=255) ttGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAGc < 1:5011684/150‑1 (MQ=255) agaTGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAGCGttt < 1:5220857/150‑1 (MQ=255) gaTGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAGCGTTTg > 1:1841786/1‑150 (MQ=255) gaTGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAGCGTTTg < 1:2654900/150‑1 (MQ=255) | AGCGCCTGCGCAAACTGAAAAGCACTACTCGCCTGTTGCGTACCGTATGCTGGCCCGGTCACCACGATGGCAAAACGCATTACTTATCTTGCCCCTGGAAATCACCGCTCTTGAACTGGCGGATGTAGAGATAGACAGTGTGTTTGGAGATGTTCAGGCGGTCAGCAACCTGGTTGATCGCATCTTTAATATCGAAGATCCCTTTCTCGTAGAGATTCAGCACGATCTGACGATTTTTGGCGTTATTAGAAACATTGCGATCGGCATTCACTTCTTCGATGGTGAACTCCAGCGTTTG > CP009273/3468998‑3469295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |