| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,579,422 | C→A | 5.0% | E254D (GAG→GAT) | ggt ← | gamma‑glutamyltranspeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,579,422 | 0 | C | A | 5.0% | 1223.4 / 26.9 | 318 | E254D (GAG→GAT) | ggt | gamma‑glutamyltranspeptidase |
| Reads supporting (aligned to +/- strand): ref base C (154/148); new base A (7/9); total (161/157) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
Only 100 of 334 total aligned reads displayed.
AGGATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCTTTACT > CP009273/3579273‑3579571 | ggATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCAtct > 2:3825157/1‑150 (MQ=255) ggATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCAtct > 2:2218938/1‑150 (MQ=255) gATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCAtctc < 1:1157186/150‑1 (MQ=255) aTTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTcc < 2:4379984/150‑1 (MQ=255) tttGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCt < 2:905123/150‑1 (MQ=255) ttGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTg < 1:4576637/150‑1 (MQ=255) tGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGCAACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTATGCATCTCCTgg > 2:3134210/1‑150 (MQ=255) tACGATATGGATCCCGCCGGAGGATGGCTGTGGCCTGGAGTACACCTGATACCCGCGATAATCGCCGCTTAACGGAGTGCGTTCGACCGCTTTATAGGCTTCTAAATCTTCTTTATTGATAAAGCCACCGTTTTTCTGCATCTCCTGGGc < 1:4869585/150‑1 (MQ=255) tACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCTGGGc > 1:5234166/1‑150 (MQ=255) tACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTGTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGc > 2:4918925/1‑150 (MQ=255) cGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGa > 2:4633461/1‑150 (MQ=255) cGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGa < 2:1219233/150‑1 (MQ=255) gATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGAt > 1:981047/1‑150 (MQ=255) gATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCTGGGCGAt < 1:1634515/150‑1 (MQ=255) atatGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATc > 2:279588/1‑150 (MQ=255) atGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTg < 1:947385/150‑1 (MQ=255) tGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGt < 2:3474716/150‑1 (MQ=255) ccgccgGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCa < 1:2618695/150‑1 (MQ=255) ccgccgGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCa > 2:2150479/1‑150 (MQ=255) ccgccgGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCa > 2:3023025/1‑150 (MQ=255) gccgGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAAGCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAAt < 1:1707640/150‑1 (MQ=255) ccgGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATc < 1:2817763/150‑1 (MQ=255) ccgGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATc < 2:2846287/150‑1 (MQ=255) ggaggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGt < 2:180997/150‑1 (MQ=255) ggaggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGt > 1:1676850/1‑150 (MQ=255) gaggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCTGGGCGATCTGTTCCGCAATCGTg > 1:769939/1‑150 (MQ=255) ggaTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGcc < 1:2210201/150‑1 (MQ=255) aTGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCtt < 1:4516846/150‑1 (MQ=255) gCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTtat < 1:3432403/150‑1 (MQ=255) cGGTGGCATGGAGTAAACCTGATACCCGCGAGAATCGCCGCTGATCGGAGTGCGTTCGACCGCGTTATAGGCTGCTAAATCTTCTGTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGAGCTGGTCCGCAATCGTGCCGTgata > 2:5236879/1‑150 (MQ=255) ggTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTACAg > 1:2358339/1‑150 (MQ=255) gCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAAtt < 1:3057889/150‑1 (MQ=255) ggAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTc > 2:1967430/1‑150 (MQ=255) gTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCgg < 2:712797/150‑1 (MQ=255) tAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCggg > 1:2404676/1‑150 (MQ=255) aaCCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGcc < 2:649443/150‑1 (MQ=255) aaCCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGcc > 2:1351168/1‑150 (MQ=255) aacTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCg < 2:4213477/148‑1 (MQ=255) gATACCCTCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGtttt < 2:3060226/150‑1 (MQ=255) gATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGtttt < 1:3210880/150‑1 (MQ=255) gATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATATCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGtttt < 2:2374743/150‑1 (MQ=255) aTACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTc > 1:3372015/1‑150 (MQ=255) ccGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCa > 1:2937824/1‑150 (MQ=255) cgATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAatc < 1:429810/150‑1 (MQ=255) gATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAatca > 1:1092114/1‑150 (MQ=255) aTAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAatcat < 1:5099520/150‑1 (MQ=255) gccgcTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAg > 1:4798563/1‑150 (MQ=255) gccgcTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAg > 2:2486920/1‑150 (MQ=255) ccgcTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAgg < 1:3825784/150‑1 (MQ=255) ttATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGctct < 2:666424/150‑1 (MQ=255) tATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCGTCTCCAGGCTCtt > 2:4475656/1‑150 (MQ=255) aTCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCttt > 1:1868120/1‑150 (MQ=255) ggAGTGCGTTCGACCGCTTTATAGGCTTCTAATTCTTATTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCTATCATCTCCAGGATCTTTGcc < 2:3973566/150‑1 (MQ=255) ggAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGcc < 1:3975699/150‑1 (MQ=255) ggAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGcc < 1:4472898/150‑1 (MQ=255) ggAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGcc > 1:5023747/1‑150 (MQ=255) ggAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCACCCTCTTTGcc > 1:5196762/1‑150 (MQ=255) cGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTc > 2:1863328/1‑150 (MQ=255) gTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCg > 2:3375450/1‑150 (MQ=255) gTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCg > 2:2091396/1‑150 (MQ=255) gTTCGACCGCTATATAGGATGCTAAATCTTCTTTAGTGATCAATAAACCGTTTTTCTGCATCTCCAGGGCGATCTGTTCAGCAATCGAGCCTTTAAAGAATACGACAGGGCCGTTTACAGCAATCATCTACAGGCTCTTTTCCAGGttag > 2:4788165/1‑148 (MQ=255) cGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCt > 2:1548681/1‑150 (MQ=255) aCCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGTCTCTTTGCCAGGTTCGCCTGc > 2:3226162/1‑150 (MQ=255) aCCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGc > 2:498624/1‑150 (MQ=255) gCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTGTCAGCAATCATATCCAGGATCTTTGCAAGGTTCGCATGCAcc > 2:4967770/1‑150 (MQ=255) ttATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGc > 1:2638005/1‑150 (MQ=255) tataGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCg < 1:1182638/150‑1 (MQ=255) ataGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCgt > 1:3518010/1‑150 (MQ=255) ggCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTc < 1:699070/150‑1 (MQ=255) tgctAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCCGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGcc > 2:817352/1‑150 (MQ=255) ctAACTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCAGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCt < 1:1932853/150‑1 (MQ=255) ctAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCt < 1:1428460/150‑1 (MQ=255) aaaTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCttt < 2:1869593/150‑1 (MQ=255) aaaTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCttt < 2:4011903/150‑1 (MQ=255) aaTCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCtttt > 2:4418883/1‑150 (MQ=255) tcttctTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTc < 2:3003688/150‑1 (MQ=255) cttcttTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCa > 1:4146621/1‑150 (MQ=255) ttcttTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAg > 2:5148300/1‑150 (MQ=255) tAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCt < 1:1913138/150‑1 (MQ=255) tAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCt < 2:129879/150‑1 (MQ=255) tAGTGATCAAGCCACCGATTTTCTGCATCTCCTGGGCGATCTTTTCCGCAATCGTGCCTTTAGAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCt < 2:2743706/150‑1 (MQ=255) aGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTc > 2:4816126/1‑150 (MQ=255) aGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTc < 1:1715153/150‑1 (MQ=255) gTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCg < 1:3292951/150‑1 (MQ=255) tCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCct < 1:4065039/150‑1 (MQ=255) tCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCct < 1:1220270/150‑1 (MQ=255) tCAAGCCACCG‑TTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCctc < 2:1706204/150‑1 (MQ=255) aaGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCctct > 1:4698780/1‑150 (MQ=255) aaGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCctct > 2:2556383/1‑150 (MQ=255) aGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCtt < 2:3572033/150‑1 (MQ=255) gCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCttt < 1:4204239/150‑1 (MQ=255) cACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTcc > 2:1073065/1‑150 (MQ=255) aCCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCa < 1:1533682/150‑1 (MQ=255) cGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGGATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCaga < 1:630675/150‑1 (MQ=255) cGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCaga < 1:3650725/150‑1 (MQ=255) ttCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATa < 1:1750597/150‑1 (MQ=255) ttCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATa < 1:1014940/150‑1 (MQ=255) cTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGc > 1:3009637/1‑150 (MQ=255) cATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCttt > 2:3887611/1‑150 (MQ=255) aTCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCTTTa > 1:2680345/1‑150 (MQ=255) | AGGATTTGTACGATATGGATCCCGCCGGAGGATGGCGGTGGCATGGAGTAAACCTGATACCCGCGATAATCGCCGCTTATCGGAGTGCGTTCGACCGCTTTATAGGCTGCTAAATCTTCTTTAGTGATCAAGCCACCGTTTTTCTGCATCTCCTGGGCGATCTGTTCCGCAATCGTGCCTTTATAGAATTCGTCCGGGCCGTTTTCAGCAATCATCTCCAGGCTCTTTGCCAGGTTCGCCTGCACCAGCGTGTCGCCCTTTTTCAGCGGCTCGCCCTCTTTCCAGAAGATAGCTTTACT > CP009273/3579273‑3579571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |