mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4615996 = | 271 (0.900) | 10 (0.040) | 7/264 | NT | 3.7% | coding (268/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4615992 | 266 (0.940) | coding (264/1383 nt) | radA | DNA repair protein | |||||
| * | ? | CP009273 | = 3904519 | 266 (0.890) | 10 (0.030) | 7/276 | NT | 3.6% | coding (367/1041 nt) | pstS | periplasmic phosphate binding protein, high‑affinity |
| ? | CP009273 | = 4489327 | NA (NA) | intergenic (+10/+83) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 3 (0.010) | 3/278 | NT | 0.99% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 4118109 | 300 (1.000) | coding (215/318 nt) | metJ | transcriptional repressor, S‑adenosylmethionine‑binding | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 4 (0.010) | 4/278 | NT | 1.3% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3360465 | 309 (1.030) | coding (181/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | 2989720 = | NA (NA) | 16 (0.050) | 12/278 | NT | 4.9% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 3360461 = | 312 (1.040) | coding (177/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | = 1384980 | 321 (1.090) | 3 (0.010) | 3/274 | NT | 0.93% | intergenic (‑125/+2) | mpaA/ymjC | murein peptide amidase A/pseudogene |
| ? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 923676 = | 312 (1.050) | 7 (0.020) | 5/276 | NT | 2.2% | coding (976/1722 nt) | cydC | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| ? | CP009273 | 1462167 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 777228 = | 246 (0.820) | 7 (0.020) +A |
3/276 | NT | 2.3% | intergenic (+120/‑313) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | CP009273 | 2811049 = | 353 (1.180) | intergenic (‑187/+94) | yqaB/argQ | fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg | |||||
| * | ? | CP009273 | = 361823 | 333 (1.110) | 8 (0.030) +TTAATTAA |
7/262 | NT | 2.7% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 286 (0.950) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 4 (0.010) +AATTC |
4/268 | NT | 1.7% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 241 (0.800) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||