| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,556,774 | G→A | 14.1% | intergenic (+298/‑177) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,556,774 | 0 | G | A | 14.1% | 1062.1 / 126.3 | 363 | intergenic (+298/‑177) | yffP/yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (139/172); new base A (31/20); total (171/192) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.51e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 363 total aligned reads displayed.
CCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTT > CP009273/2556627‑2556922 | cTACCCGGGCCTTTCTCACAATCCCCTCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTg < 2:2402087/150‑1 (MQ=255) cTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTg < 1:3421609/150‑1 (MQ=255) tACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGa > 2:4200616/1‑150 (MQ=255) cccGGGCCTTTCTCACAAGCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAt < 2:2646088/150‑1 (MQ=255) cGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAttt < 1:4548251/150‑1 (MQ=255) gggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAtttt < 1:2185394/150‑1 (MQ=255) gggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAAtttt < 1:2102166/150‑1 (MQ=255) gCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgt < 1:4327970/150‑1 (MQ=255) gCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgt > 2:952136/1‑150 (MQ=255) ccTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgtg > 1:1838605/1‑150 (MQ=255) ccTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgtg < 2:1408721/150‑1 (MQ=255) ccTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTtgtg < 2:4866448/150‑1 (MQ=255) tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGAt < 2:5377561/150‑1 (MQ=255) tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGAt < 2:3241712/150‑1 (MQ=255) tttCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGAt < 2:711264/150‑1 (MQ=255) tcccaAGCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACACTTGATTAATTTCTGAACATTCAAATCAACTCCCC‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAg < 2:4552215/147‑1 (MQ=255) acaATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGAt > 2:1156554/1‑150 (MQ=255) caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATc < 2:5271467/150‑1 (MQ=255) caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATc > 2:4133263/1‑150 (MQ=255) caATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATc < 1:817646/150‑1 (MQ=255) caATCCCCGCGGACATTATATCACCCATCTGTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGAt < 2:4281739/150‑1 (MQ=255) cGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCttttt > 1:4272313/1‑150 (MQ=255) gCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTc < 1:102972/150‑1 (MQ=255) gCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTc > 1:2929087/1‑150 (MQ=255) aCATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCtt > 1:1696292/1‑150 (MQ=255) cATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTc < 2:2504872/150‑1 (MQ=255) cATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTc > 1:3919261/1‑150 (MQ=255) aTTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCa > 1:3017034/1‑150 (MQ=255) ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAg < 2:492811/150‑1 (MQ=255) ttATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAg > 1:3053448/1‑150 (MQ=255) tatCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCa < 1:4797570/150‑1 (MQ=255) cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttt < 1:4041231/150‑1 (MQ=255) cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttt < 1:1882076/150‑1 (MQ=255) cACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAttt > 1:1454092/1‑150 (MQ=255) aCCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCAtttt < 2:1868778/150‑1 (MQ=255) ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTg > 1:2619415/1‑150 (MQ=255) ccATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTg < 2:1727042/150‑1 (MQ=255) aTCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGtt > 1:1184278/1‑150 (MQ=255) aTCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGtt > 1:4024622/1‑150 (MQ=255) tCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAAGTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGttt > 2:2992835/1‑150 (MQ=255) tttCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTaa < 1:5301919/150‑1 (MQ=255) ttCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAAt > 2:561794/1‑150 (MQ=255) gTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa < 1:2797782/150‑1 (MQ=255) gTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaa > 2:2857904/1‑150 (MQ=255) ttttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaat < 2:819851/150‑1 (MQ=255) tttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaatc > 1:3159399/1‑150 (MQ=255) ttCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtcaatca > 1:568670/1‑150 (MQ=255) cAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAAc < 1:1402527/150‑1 (MQ=255) aGGTGGGAGACTGATGGCCGCCGACGTTGCACCATTGATTAAGTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTGTTGTTTAATTCAATCAACg > 2:3989291/1‑150 (MQ=255) gTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaa > 2:2722472/1‑150 (MQ=255) tGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaaa > 1:4634868/1‑150 (MQ=255) tGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaaa < 1:2403878/150‑1 (MQ=255) gggAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAg < 1:639388/150‑1 (MQ=255) agaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCa < 2:4408370/150‑1 (MQ=255) agaCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCa > 2:184788/1‑150 (MQ=255) aCTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGt > 2:2339152/1‑150 (MQ=255) tGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTc > 2:3627359/1‑150 (MQ=255) aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTccc < 2:261508/150‑1 (MQ=255) aTGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTccc > 2:1328319/1‑150 (MQ=255) tGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCca > 2:301198/1‑150 (MQ=255) tGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCca < 1:1681617/150‑1 (MQ=255) gccgccGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaac < 1:688527/150‑1 (MQ=255) ccgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaaca < 1:578148/150‑1 (MQ=255) cgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaa > 2:2947155/1‑150 (MQ=255) cgccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaa > 1:3714854/1‑150 (MQ=255) ccgACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaaca < 1:3359100/150‑1 (MQ=255) gACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaa < 1:5504788/150‑1 (MQ=255) aCGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaaa > 1:4880059/1‑150 (MQ=255) cGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAAt < 2:1970943/150‑1 (MQ=255) gTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGGTCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATa > 2:2484866/1‑150 (MQ=255) tGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaaa > 2:3322922/1‑150 (MQ=255) tcaccATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAg < 2:1570639/149‑1 (MQ=255) cacaATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGa < 2:5671938/150‑1 (MQ=255) acaATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGAt > 1:3611838/1‑150 (MQ=255) aaTTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATgg > 2:1018413/1‑150 (MQ=255) aTTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATggg < 2:3919261/150‑1 (MQ=255) ttGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGa > 2:5117576/1‑150 (MQ=255) tGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAg < 2:1149475/150‑1 (MQ=255) aTTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGt > 1:4786750/1‑150 (MQ=255) ttAATTTCTGAGCATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTa < 2:1438098/150‑1 (MQ=255) aaTTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaa > 2:890246/1‑150 (MQ=255) aTTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaa > 2:5227263/1‑150 (MQ=255) aTTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTaaaa > 1:4679855/1‑150 (MQ=255) tGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑aa > 1:50531/1‑150 (MQ=255) agAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑aa < 2:3443606/149‑1 (MQ=255) aCATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACg > 1:3754165/1‑150 (MQ=255) ttCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTg < 1:1966787/150‑1 (MQ=255) tCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTgg < 2:2558913/150‑1 (MQ=255) aaaTCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGa < 1:3434134/150‑1 (MQ=255) cTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCACTTCAGGCATTTTTGTTTAATTAAATCAACGAAAGGCAGTTCACAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGAGGGAAGttcct > 1:2767996/1‑146 (MQ=255) cca‑ccaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTa < 1:50205/150‑1 (MQ=255) a‑ccaAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGATTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACt < 2:2904307/150‑1 (MQ=255) caAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTgg > 2:3824973/1‑150 (MQ=255) caAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTgg > 1:5609365/1‑150 (MQ=255) aaaGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGt < 2:4735238/150‑1 (MQ=255) aaaGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGt < 2:3532076/150‑1 (MQ=255) ccAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATg < 1:326973/150‑1 (MQ=255) aaGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAAt > 2:4498209/1‑150 (MQ=255) gAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt > 2:4687420/1‑150 (MQ=255) aGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAAGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGttt < 2:1263910/150‑1 (MQ=255) | CCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCA‑CCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATG‑AAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTT > CP009273/2556627‑2556922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |