| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,708,587 | C→A | 11.8% | T31T (ACG→ACT) | yfiE ← | putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,708,587 | 0 | C | A | 11.8% | 1087.4 / 89.0 | 325 | T31T (ACG→ACT) | yfiE | putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (154/132); new base A (21/18); total (175/150) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
Only 100 of 336 total aligned reads displayed.
GCCTCACGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAACATTCATTTTTTTA > CP009273/2708438‑2708735 | gCCTCACGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCAcc < 1:3844179/150‑1 (MQ=255)gCCTCACGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCAcc < 1:2638676/150‑1 (MQ=255) tCACGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTc < 2:5130453/150‑1 (MQ=255) cACGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACAGTCg > 2:3471505/1‑150 (MQ=255) aCGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGa < 1:1135915/150‑1 (MQ=255) cGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGAt < 1:4481656/150‑1 (MQ=255) gAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGAtt > 2:876713/1‑150 (MQ=255) aaGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATtg > 1:5564534/1‑150 (MQ=255) gTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTa < 1:2521631/150‑1 (MQ=255) gTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTa < 1:4255925/150‑1 (MQ=255) ccATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGc < 2:5231854/150‑1 (MQ=255) cATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGca > 1:5670868/1‑150 (MQ=255) aTCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGcac > 2:4941863/1‑150 (MQ=255) aTCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGcac < 1:615515/150‑1 (MQ=255) tCACTCGGGTAAGTTCATATATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGTAAAGTCACCGTCGATTGTGTACAGcaca < 1:2371635/150‑1 (MQ=255) aCTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACAGTCGATTGTGTACAGCACAAt > 2:4282326/1‑150 (MQ=255) cGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAAtttt > 1:1917235/1‑150 (MQ=255) ggTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACCATTTTTg > 2:644998/1‑150 (MQ=255) ggTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACAGTCGATTGTGTACAGCACAATTTTTg > 2:1373066/1‑150 (MQ=255) aaGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGa < 1:1100929/150‑1 (MQ=255) aGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGaa > 2:3626026/1‑150 (MQ=255) aGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGaa > 1:4017869/1‑150 (MQ=255) gTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAg > 1:3047155/1‑150 (MQ=255) gTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAg > 1:179785/1‑150 (MQ=255) gTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAg < 1:1274844/150‑1 (MQ=255) ttCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGAACAATTTTTGCGAAGc > 2:4884666/1‑150 (MQ=255) aTAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCg < 1:3760102/150‑1 (MQ=255) tAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGc > 1:4267419/1‑150 (MQ=255) tAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGc > 1:966024/1‑150 (MQ=255) aaaTGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTTGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTTCGAAGCTCGC‑a > 1:3340578/1‑150 (MQ=255) aaTGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑aa > 1:5249822/1‑150 (MQ=255) tgCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAg < 2:2443748/150‑1 (MQ=255) ccGGCAGCACCTTTGTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGACGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAgg < 2:2899387/149‑1 (MQ=255) cGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGa > 1:4502837/1‑150 (MQ=255) ccgcaACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTTTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAATGAAcc > 1:5470298/3‑150 (MQ=255) aCTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCtt < 2:5045205/150‑1 (MQ=255) aCTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCtt < 2:2064458/150‑1 (MQ=255) cTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTc < 2:4321369/150‑1 (MQ=255) ttttCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTccac > 1:5086690/1‑150 (MQ=255) tttCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTccacc > 1:1337348/1‑150 (MQ=255) tttCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTccacc > 1:1472808/1‑150 (MQ=255) ttCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACAGTCGATTGGGTACAGCACAAATTTTGCGAAGCTCGC‑AAAAAGGAACCCACGTccacca > 2:4750245/1‑150 (MQ=255) ccTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACg < 2:161350/150‑1 (MQ=255) cTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACgg > 1:2907288/1‑150 (MQ=255) tCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGtt < 1:2706162/150‑1 (MQ=255) ggTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAg > 1:4815855/1‑150 (MQ=255) gTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGc > 2:1534885/1‑150 (MQ=255) aaGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGTAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGt > 2:5325662/1‑150 (MQ=255) cacaTCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGtaata > 2:5085692/1‑150 (MQ=255) acaTCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCACTTCCACCACGGTTTTAAGCGtaataa > 1:5230538/1‑150 (MQ=255) caTCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATaaa > 2:637800/1‑150 (MQ=255) caTCCGTCGGCCAATATTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACATCACAATTTTTGCGAAGCTAGC‑AAAAAGGAACCCTCTTACACCACGGTTTTAAGCGTaaaaaa > 1:2111040/1‑150 (MQ=255) aTCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGACCCCTCATCCACCACGGTTTTAAGCGTCATaaac > 2:5410050/1‑149 (MQ=255) aTCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATaaaa < 1:2344517/150‑1 (MQ=255) tCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAAc < 2:196276/150‑1 (MQ=255) gTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGgc < 2:2790284/150‑1 (MQ=255) gTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCACTTCCACCACGGTTTTAAGCGTAATAAAACGgc > 2:1830187/1‑150 (MQ=255) tCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGgcg > 2:711388/1‑150 (MQ=255) cGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAACAGTCACCGTCGAGTGTGTACCGCACAATTTTTGCGAAGCTCGC‑ACAAAGGACCCCTCTTCCACCACGGTTTTAAGCGTAATAACACGgcgc > 2:2990827/1‑150 (MQ=255) gCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAg < 1:3626996/150‑1 (MQ=255) ccAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGa > 2:4006986/1‑150 (MQ=255) ccAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGa > 1:104880/1‑150 (MQ=255) ccAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACAGTCGATTGGGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGa > 2:1005407/1‑150 (MQ=255) aTTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATcc < 1:2022094/150‑1 (MQ=255) ttttCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCa < 1:4213387/150‑1 (MQ=255) tctcAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATaa > 2:4446652/1‑150 (MQ=255) ctcAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAAc > 2:1263192/1‑150 (MQ=255) tcAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAAcc < 2:1056697/150‑1 (MQ=255) aaCTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGGTTTAAGCGTAATAAAACGGCGCATATCCATAACCCAAAAc > 2:5656546/1‑150 (MQ=255) aCTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAAcc > 1:1221608/1‑150 (MQ=255) gACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTAAAGCACAATTTTTGCGAAGCACGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAACGTAATAAAACGGCGCAGATCCATAACCCCACACCTATc > 1:3967621/1‑150 (MQ=255) aaaaCTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGaaaa < 1:839366/150‑1 (MQ=255) aaaCTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAat < 1:1395811/150‑1 (MQ=255) aaCTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTAAAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTATTCCACCACGGGTTTAAGCGTAATAAAACGGCGCAGATCCATAAACCCAAAACTATCGaaaaga > 2:5194967/1‑148 (MQ=255) cTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATc < 1:5294665/150‑1 (MQ=255) cTCCTGCTCAAGCTGCTGAATATGAAAAGTCACAGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATc < 1:1373066/150‑1 (MQ=255) tGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAAt < 1:1634785/150‑1 (MQ=255) gCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATc > 2:2702121/1‑150 (MQ=255) cTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCt > 2:1198522/1‑150 (MQ=255) cTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAAGCt > 2:4042200/1‑150 (MQ=255) tCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTa < 2:3210682/150‑1 (MQ=255) tCAAGCTGCTGAATATGAAAAGTCACAGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTa < 1:4282326/150‑1 (MQ=255) cAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAg < 2:934019/150‑1 (MQ=255) aGCTGCTGAATCTGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAAACTAGaa > 1:3276421/1‑150 (MQ=255) aGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGaa < 2:3673016/150‑1 (MQ=255) gctgctGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAat < 2:2480478/150‑1 (MQ=255) gctgAATATGAAAAGTCACAGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGCAAAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAatat < 1:3565878/150‑1 (MQ=255) tgAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATaaa < 2:253592/150‑1 (MQ=255) aaTATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATaaaaa < 1:876769/150‑1 (MQ=255) atatGAAAAGTCACAGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAAc < 2:2626917/150‑1 (MQ=255) gAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAAcattc > 2:2031945/1‑150 (MQ=255) gAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAAcattc < 1:4697240/150‑1 (MQ=255) aaaaGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCACACCTATAGAAAATATCGAATAAAGAATATAAAAAcaatcc > 2:3360313/1‑149 (MQ=255) aGTCACCTTAGATTGTGTACAGCACAATTTTTTCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACAACGGTTTTTTGCGTAATAAAACGGCGCAGATCAATAAACCCAATCCTATCTAAAATATAGAATCTATAATATAAAAAAATTAAttt > 2:2967891/1‑150 (MQ=255) gTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAACATTCAtttt < 2:1405821/150‑1 (MQ=255) tCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAAACAAGAATATAAAAAAATTCAttttt > 1:4144338/1‑150 (MQ=255) cACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAACATTCAtttttt > 1:3705547/1‑150 (MQ=255) aCCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAACATTCAttttttt < 1:4994946/150‑1 (MQ=255) ccGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAATGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAACATTCATTTTTTTa > 2:2269575/1‑150 (MQ=255) ccGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAACATTCATTTTTTTa < 2:933958/150‑1 (MQ=255) | GCCTCACGAAGCGTATCCATCACTCGGGTAAGTTCATAAATGTGCGGCAGCAACTTTTTTCCTTCGCGGGTAAGGCACATCCGTCGGCCAATTTTCTCAAATAACTGGACTGAAAACTCCTGCTCAAGCTGCTGAATATGAAAAGTCACCGTCGATTGTGTACAGCACAATTTTTGCGAAGCTCGC‑AAAAAGGAACCCTCTTCCACCACGGTTTTAAGCGTAATAAAACGGCGCAGATCCATAACCCCAAACCTATCGAAAATATCGAATCTAGAATATAAAAACATTCATTTTTTTA > CP009273/2708438‑2708735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |