| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,131,302 | C→A | 5.4% | D194Y (GAT→TAT) | gss ← | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,131,302 | 0 | C | A | 5.4% | 1400.6 / 38.0 | 363 | D194Y (GAT→TAT) | gss | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| Reads supporting (aligned to +/- strand): ref base C (180/163); new base A (10/10); total (190/173) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 368 total aligned reads displayed.
CTGACCGTTGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCGCAATAC > CP009273/3131153‑3131451 | tGACCGTTGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCt < 2:2938374/150‑1 (MQ=255) aCCGTTGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTc > 2:1326654/1‑150 (MQ=255) cGTTGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCg > 1:5540204/1‑150 (MQ=255) gTTGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGt > 1:3361181/1‑150 (MQ=255) gTTGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGt < 1:1511731/150‑1 (MQ=255) ttGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTc > 1:4246795/1‑150 (MQ=255) cTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGat > 2:4268319/1‑150 (MQ=255) tGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGatc > 1:2246472/1‑150 (MQ=255) cacaTAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGatcat > 2:3559553/1‑150 (MQ=255) acaTAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGatcatc > 2:5572494/1‑150 (MQ=255) caTAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATcc > 2:1132129/1‑150 (MQ=255) aTAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCa > 2:5384971/1‑150 (MQ=255) aTAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATATTCCGTCTGGATCATCCa > 1:1567586/1‑150 (MQ=255) tAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAg > 2:3219415/1‑150 (MQ=255) ggCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGcc < 1:5661595/150‑1 (MQ=255) cGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCGTCCAGCCCa > 1:62258/1‑150 (MQ=255) cGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCa > 1:5324685/1‑150 (MQ=255) cGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCa > 1:777146/1‑150 (MQ=255) gTTGTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCACTTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAg < 2:2719890/150‑1 (MQ=255) cAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAAtggt > 2:1876624/1‑150 (MQ=255) cAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAAtggt > 1:3210652/1‑150 (MQ=255) aGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTAGTTTTCCAGGCGCGCTCCGCTGATAGTCAGCAGCTCGCCTGCAATTACCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAAttgag > 2:3115882/1‑146 (MQ=255) cGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATggtggt > 1:2480561/1‑150 (MQ=255) cGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATggtggt < 1:2162155/150‑1 (MQ=255) ggATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGgtggtg > 2:2357388/1‑150 (MQ=255) gATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGgtgt > 2:227567/1‑150 (MQ=255) gATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGgtgt > 2:1030610/1‑150 (MQ=255) aTCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtc < 1:1184638/150‑1 (MQ=255) aTCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtc < 1:2120698/150‑1 (MQ=255) aTCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtc < 1:2058146/150‑1 (MQ=255) aTCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtc < 2:3790864/150‑1 (MQ=255) tCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtca < 1:2636317/150‑1 (MQ=255) cTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTTAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtcat < 2:4734643/150‑1 (MQ=255) cTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtcat < 1:982221/150‑1 (MQ=255) tttttCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGtcatc < 2:3469258/150‑1 (MQ=255) tttCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCaa < 1:4535834/150‑1 (MQ=255) tttCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGAGCATCCAGCCCAGACTGGTGGGGTCATCaa > 1:2979216/1‑150 (MQ=255) ttCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTATCCATGCGCGCTCCGCTGAATTTCAGCAGCTCGCCACCAATTTCCGCCTGCGGTAAGCTTTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCaaa > 1:3702639/1‑150 (MQ=255) tCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCaaaa > 1:5403712/1‑150 (MQ=255) tCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCaaaa < 1:4384805/150‑1 (MQ=255) cATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAg > 2:2456377/1‑150 (MQ=255) aTCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAgt > 1:4207599/1‑150 (MQ=255) tCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAgtg < 1:5495282/150‑1 (MQ=255) ccAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAgtgt < 1:4599683/150‑1 (MQ=255) aGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCt < 1:305910/150‑1 (MQ=255) ccATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCttt > 2:536670/1‑150 (MQ=255) tttACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAg < 2:4176470/150‑1 (MQ=255) tACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAggg > 1:3634962/1‑150 (MQ=255) ccGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGta > 2:4578636/1‑150 (MQ=255) cGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGtat > 2:1450392/1‑150 (MQ=255) gTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGtata > 2:810006/1‑150 (MQ=255) gTCAAACTGGCCTTTGTTTTCCAGGCGCGCTACGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGTTAAGCTGTTTTAAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGtata < 2:2189483/150‑1 (MQ=255) cAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATagc > 2:4437778/1‑150 (MQ=255) aaCTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATagcag > 1:4790165/1‑150 (MQ=255) cTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTACGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATagcagac > 2:3639280/1‑148 (MQ=255) gCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGtt > 1:5131577/1‑150 (MQ=255) tttGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTc < 1:2359777/150‑1 (MQ=255) tttGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTc < 1:5246288/150‑1 (MQ=255) tGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGa > 1:1847983/1‑150 (MQ=255) tttCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGacca < 1:2731036/150‑1 (MQ=255) cAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCAt < 1:4498591/150‑1 (MQ=255) aGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTCTAGCAGCCGTTTTCGACCACCAtc > 1:4064379/1‑150 (MQ=255) ggCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCAtct < 2:1891548/150‑1 (MQ=255) cgcgcTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTcc > 2:5022919/1‑150 (MQ=255) cgcTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAg < 2:2595683/150‑1 (MQ=255) gcTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGc > 1:2534100/1‑150 (MQ=255) gcTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGc > 1:3783520/1‑150 (MQ=255) cGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTcgc < 2:4986037/150‑1 (MQ=255) agcagcTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGt > 1:5079157/1‑150 (MQ=255) agcagcTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATATTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGt > 1:39823/1‑150 (MQ=255) cagcTCGCCTGCAATTTCCGGCTTCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTg < 2:3868923/150‑1 (MQ=255) cTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGccc > 1:3474013/1‑150 (MQ=255) tCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCt < 1:708410/150‑1 (MQ=255) tCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCt < 2:2386704/150‑1 (MQ=255) cTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCg > 1:1126250/1‑150 (MQ=255) cTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCg > 2:1752928/1‑150 (MQ=255) cTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCGTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCg < 2:5253489/150‑1 (MQ=255) aTTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAAc < 1:2821307/150‑1 (MQ=255) aTTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAAc > 2:631272/1‑150 (MQ=255) aTTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAAc > 2:3748474/1‑150 (MQ=255) tttCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACg < 2:2645604/150‑1 (MQ=255) tCCGGCTGCGGTAAGCTGGAGTCAGTATATTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACggg < 2:3973066/150‑1 (MQ=255) cTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGgaatg > 1:166345/1‑150 (MQ=255) tGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGgaatga < 1:2357388/150‑1 (MQ=255) tGCGGTAAGCTGTATTCAGTATATTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGgactga > 1:4567516/1‑150 (MQ=255) gCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGgaatgaa < 2:2066229/150‑1 (MQ=255) cGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGgaatgaat < 1:762693/150‑1 (MQ=255) ggTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATc > 2:4494189/1‑150 (MQ=255) ggTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATc > 1:189729/1‑150 (MQ=255) gTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCa > 2:5144023/1‑150 (MQ=255) atctttATTCAGTATCATCCGTCTGGATCATCCAGCCAAGAATTCTGGTGTCATCAAAATTGACTATCAGGGTATAGAAGCCGTTTTCGACCACCATCTCCAGCACGAGCGTCCACTGTAGCCCTAGCGGCAACGGGGAATGAAacactg > 2:436225/6‑148 (MQ=255) tATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGt < 1:135506/150‑1 (MQ=255) tATTCAGTATATTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGt > 2:3531010/1‑150 (MQ=255) ttCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTc < 2:4255912/150‑1 (MQ=255) cAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCg < 1:4690993/150‑1 (MQ=255) tATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCGCaa > 1:2872045/1‑150 (MQ=255) aTCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCGCAAt < 1:4963642/150‑1 (MQ=255) aTCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCGCAAt < 1:4227852/150‑1 (MQ=255) tCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCGCAATa < 2:2008100/150‑1 (MQ=255) cTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCGCAATAc < 2:4912842/150‑1 (MQ=255) | CTGACCGTTGGCCTGCACATAGGCGTTTTGCAGCGGATCTTTTTCATCCAGCCATTTACCGTCAAACTGGCCTTTGTTTTCCAGGCGCGCTCCGCTGATTTTCAGCAGCTCGCCTGCAATTTCCGGCTGCGGTAAGCTGTATTCAGTATCTTCCGTCTGGATCATCCAGCCCAGAATGGTGGTGTCATCAAAAGTGTCTTTCAGGGTATAGCAGCCGTTTTCGACCACCATCTCCAGCTCGCGCGTCCACTGTTGCCCTTGCGGCAACGGGGAATGAATCACGTTCTGTTCCGCAATAC > CP009273/3131153‑3131451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |