| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,309,359 | C→A | 6.1% | T5T (ACG→ACT) | infB ← | translation initiation factor IF‑2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,309,359 | 0 | C | A | 6.1% | 1451.6 / 46.0 | 378 | T5T (ACG→ACT) | infB | translation initiation factor IF‑2 |
| Reads supporting (aligned to +/- strand): ref base C (169/186); new base A (12/11); total (181/197) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01 | |||||||||||
Only 100 of 383 total aligned reads displayed.
CCTGAATTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGCCCTGTTCGGC > CP009273/3309210‑3309508 | ccTGAATTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATc > 1:700038/1‑150 (MQ=255)ccTGAATTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATc < 1:409488/150‑1 (MQ=255) cTGAATTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCg < 2:2787449/150‑1 (MQ=255) gAATTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATAGtt < 2:3630827/150‑1 (MQ=255) aaTTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTa < 1:751073/150‑1 (MQ=255) aaTTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTa < 1:2948056/150‑1 (MQ=255) ttttCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACAt < 1:678847/150‑1 (MQ=255) ttCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCt < 2:5036908/150‑1 (MQ=255) tCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATAGTTACATCTg < 1:2706310/150‑1 (MQ=255) cTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGt > 1:1220145/1‑150 (MQ=255) tGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTc < 2:1107994/150‑1 (MQ=255) aTTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCAt > 1:4200373/1‑150 (MQ=255) cAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCt < 2:310830/150‑1 (MQ=255) aGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTg > 2:1670962/1‑150 (MQ=255) aGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTg > 1:4552598/1‑150 (MQ=255) gtggtCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGtt < 1:4625648/150‑1 (MQ=255) gtggtCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGtt > 1:5311798/1‑150 (MQ=255) tggtCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttc > 2:3939699/1‑150 (MQ=255) tggtCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttc < 1:4888304/150‑1 (MQ=255) gtCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttcct > 2:842870/1‑150 (MQ=255) gtCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttcct < 1:1355775/150‑1 (MQ=255) tcaatcaaAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttcctt < 2:1280468/150‑1 (MQ=255) tcaatcaaAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttcctt > 1:4476686/1‑150 (MQ=255) tcaatcaaAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttcctt > 1:2270776/1‑150 (MQ=255) tcaatcaaAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttcctt < 2:1958267/150‑1 (MQ=255) caatcaaAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGttccttc < 1:366058/150‑1 (MQ=255) atcaaAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTtccttcct < 1:321736/150‑1 (MQ=255) tcaaAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACAACTGTCATGCTGTTCCTTCCTg < 1:2312600/150‑1 (MQ=255) cTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGt < 2:1243915/150‑1 (MQ=255) cTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGt < 2:1574909/150‑1 (MQ=255) tctTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTAc > 1:2613624/1‑150 (MQ=255) tgtgCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCt < 1:1161586/150‑1 (MQ=255) gtgCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATAGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCtt < 1:5461067/150‑1 (MQ=255) gCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATAGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCg < 1:3531303/150‑1 (MQ=255) acacAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCAc < 2:2321335/150‑1 (MQ=255) acacAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCAc < 1:4723182/150‑1 (MQ=255) cacaGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCAcc < 1:3645615/150‑1 (MQ=255) acaGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCg > 1:3739172/1‑150 (MQ=255) ccgagTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGa < 2:3844713/148‑1 (MQ=255) caGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGa < 2:3246794/150‑1 (MQ=255) gagTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAAc < 2:4400371/150‑1 (MQ=255) gtcgtcAGCAGTCTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCa < 2:2497274/150‑1 (MQ=255) gtcgtcAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCa > 1:850948/1‑150 (MQ=255) tcgtcAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAg < 1:132539/150‑1 (MQ=255) tcAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCaa < 1:149779/150‑1 (MQ=255) cagcagACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCaaa > 1:2031961/1‑150 (MQ=255) cagACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAatat < 2:5301774/150‑1 (MQ=255) cagACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAatat > 2:465145/1‑150 (MQ=255) agACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATAtt > 2:3181575/1‑150 (MQ=255) agACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATAtt > 1:5127969/1‑150 (MQ=255) agACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATAtt < 1:5599777/150‑1 (MQ=255) gACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCAGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACAAGCaaaaaata > 2:3031272/1‑145 (MQ=255) cTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACg < 1:1028662/150‑1 (MQ=255) ttCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACTTCTGTCATGCTGTTCCTTCCTGCTACAGTCTATTACGCTTCGTCACCGAACCAGCAAATATTACgg < 2:4103851/150‑1 (MQ=255) tCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACggg < 2:3706080/150‑1 (MQ=255) ccGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGc > 1:1290127/1‑150 (MQ=255) ggATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAg > 2:3409411/1‑150 (MQ=255) aTACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGcc > 2:3375261/1‑150 (MQ=255) aCCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCAt > 2:5563283/1‑150 (MQ=255) ccTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATa < 1:3381040/150‑1 (MQ=255) cTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATaa < 2:1184849/150‑1 (MQ=255) cTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATaa < 2:3135687/150‑1 (MQ=255) gCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATc > 1:2883531/1‑150 (MQ=255) cATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCa < 2:694558/150‑1 (MQ=255) aGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGc < 1:193840/150‑1 (MQ=255) aaaTTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTcc > 2:4574898/1‑150 (MQ=255) aaTTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCg > 2:5349203/1‑150 (MQ=255) tGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTCCAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCt > 2:3492747/1‑150 (MQ=255) gCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCtt < 2:2096686/150‑1 (MQ=255) gTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCttttt > 2:2550721/1‑150 (MQ=255) tACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTtc < 2:810457/150‑1 (MQ=255) cAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTtcgtc > 2:933992/1‑150 (MQ=255) cAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTtcgtc > 2:1440386/1‑150 (MQ=255) ggCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCgg > 2:4232392/1‑150 (MQ=255) cGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTc > 1:2281979/1‑150 (MQ=255) ttCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCaa < 1:1565089/150‑1 (MQ=255) ttCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCaa > 2:2849997/1‑150 (MQ=255) ccACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAAcc > 2:552366/1‑150 (MQ=255) gAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCg < 1:2747737/150‑1 (MQ=255) gAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCg > 1:5054243/1‑150 (MQ=255) gAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCg > 1:3029532/1‑150 (MQ=255) ggTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGat < 1:4674194/150‑1 (MQ=255) gTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGata < 2:1482090/150‑1 (MQ=255) cTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATc > 1:2450088/1‑150 (MQ=255) cTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATc > 1:4366368/1‑150 (MQ=255) tGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCa > 1:390934/1‑150 (MQ=255) gTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAg < 1:2058898/150‑1 (MQ=255) cGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGcc > 2:2282006/1‑150 (MQ=255) gCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCa < 2:700123/150‑1 (MQ=255) ctctGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAg > 1:1674703/1‑150 (MQ=255) ctctGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAg > 1:4506904/1‑150 (MQ=255) tGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGatc < 2:1610125/150‑1 (MQ=255) gCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGAtcatca > 2:1090554/1‑150 (MQ=255) aGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATg < 2:3687026/150‑1 (MQ=255) gTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGccc > 1:2814406/1‑150 (MQ=255) gTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGccc > 1:3565122/1‑150 (MQ=255) ttttAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGCCCt < 2:4796903/150‑1 (MQ=255) ttttAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGCCCt < 1:1013075/150‑1 (MQ=255) ttttAATCGTTACATCTGTCATGCTGTTCCTTCCTGCGACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGCCCt < 2:2250041/150‑1 (MQ=255) tCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGCCCTGTTCgg > 1:1867871/1‑150 (MQ=255) | CCTGAATTTTTCTGATTCAGGTGGTCAATCAAAGTCTGTTTCTCTTGTGCAGACACAGAGTCGTCAGCAGACTTCCGGATACCTGCATCAGCAAATTGCTGTACCAGGCGTTCCACGGAGGTCTGTCGCTCTGCGGCCAGCGTTTTAATCGTTACATCTGTCATGCTGTTCCTTCCTGCTACAGTTTATTACGCTTCGTCACCGAACCAGCAAATATTACGGGCAGCCATAATCAGTGCTCCGGCTTTTTCGTCGGTCAACCCTTCGATATCAGCCAGATCATCAATGCCCTGTTCGGC > CP009273/3309210‑3309508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |