| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,527,320 | C→T | 5.2% | H382Y (CAC→TAC) | pck → | phosphoenolpyruvate carboxykinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,527,320 | 0 | C | T | 5.2% | 1386.9 / 40.3 | 382 | H382Y (CAC→TAC) | pck | phosphoenolpyruvate carboxykinase |
| Reads supporting (aligned to +/- strand): ref base C (196/165); new base T (8/12); total (205/177) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
Only 100 of 386 total aligned reads displayed.
CCCGCGTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTATGCAGGCG > CP009273/3527171‑3527469 | cccGCGTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATc > 1:3707311/1‑150 (MQ=255) ccGCGTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCa < 1:1282068/150‑1 (MQ=255) cgcgTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATTAc > 2:1198704/1‑150 (MQ=255) gcgTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACt < 1:2168140/150‑1 (MQ=255) cgTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACtt < 2:4049164/150‑1 (MQ=255) cgTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACtt > 2:3555378/1‑150 (MQ=255) cgTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACtt < 2:4644109/150‑1 (MQ=255) tttCTTATACGATATAACACATAGAAAACATAGATAAGCCGGTATCCAAAGCGGGCAACGCGAAAAAGGATATCTTAATGACTTCTGAAGCTTTCGGCGTGATGCCGCAGTTTTATCTCCTCACTGACGATCAAACCCAGTATCACttac > 2:1875415/1‑148 (MQ=255) tCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCctc < 1:823560/150‑1 (MQ=255) cTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCctct > 2:3655944/1‑150 (MQ=255) cTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGGTGCCGCCGGTGTCTCGCCTGACTGCCGATCAAACCCAGAAGCACTTCctct > 2:1335198/1‑150 (MQ=255) aTCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTg > 1:4926806/1‑150 (MQ=255) tCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTgg > 1:5448714/1‑150 (MQ=255) ccGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGc > 1:2290762/1‑150 (MQ=255) tCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAAc > 2:2211603/1‑150 (MQ=255) gATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTg > 1:659364/1‑150 (MQ=255) gATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTg < 1:4780933/150‑1 (MQ=255) tAACATTGTTAAGCCGGTTTCCAAAGAGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGACGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGc > 2:4757900/1‑150 (MQ=255) aaCATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCTACTAAGGTTATCTTCCTGAATGCTGATGCTTTCGCCGTTTTGCCGCCGGTTACTCGCCTGACTGCCGATAAAACCAAGAAAAAATTCCACAATGGATACACCGCCAAACTGGcc > 2:1410282/1‑150 (MQ=255) cATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCgg > 2:2624260/1‑150 (MQ=255) cATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCgg > 2:603810/1‑150 (MQ=255) aTTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGt > 1:3669777/1‑150 (MQ=255) tGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTAc < 1:4518968/150‑1 (MQ=255) gTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACt < 2:5337386/150‑1 (MQ=255) ttAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTg < 1:1447074/150‑1 (MQ=255) tAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGa < 2:2988931/150‑1 (MQ=255) aaGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAg > 1:4400577/1‑150 (MQ=255) gCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCg < 1:1896273/150‑1 (MQ=255) ccGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGt < 2:4732453/150‑1 (MQ=255) cGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTg > 1:4137287/1‑150 (MQ=255) ggTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTgg < 2:2366275/150‑1 (MQ=255) ccAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATTACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCa < 2:556926/150‑1 (MQ=255) aaGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCaccg < 1:4166991/150‑1 (MQ=255) aGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCaccga > 2:3296294/1‑150 (MQ=255) aGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCaccga < 1:3778810/150‑1 (MQ=255) ccACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGAc < 2:5265423/150‑1 (MQ=255) cACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATTACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACg > 1:4609101/1‑150 (MQ=255) aCGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATTACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGc < 1:1070069/150‑1 (MQ=255) cgcgACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGcc > 2:5101784/1‑150 (MQ=255) cgcgACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGcc > 1:4092615/1‑150 (MQ=255) cgcgACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACGTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGcc < 2:3322809/150‑1 (MQ=255) gACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAAc > 2:777090/1‑150 (MQ=255) aCTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAAcc < 1:1084390/150‑1 (MQ=255) cTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATTACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCt < 1:1198704/150‑1 (MQ=255) cTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCt < 1:982597/150‑1 (MQ=255) aaGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTtc < 1:5096173/150‑1 (MQ=255) aaGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTtc > 2:4435138/1‑150 (MQ=255) ttATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCg < 2:3877921/150‑1 (MQ=255) ttATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCg > 1:624307/1‑150 (MQ=255) aTCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCgct > 2:254929/1‑150 (MQ=255) aTCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCgct < 1:3487738/150‑1 (MQ=255) ccTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCgcttgctt < 2:2432098/150‑1 (MQ=255) cTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTc < 2:4600076/150‑1 (MQ=255) tGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCg > 1:163358/1‑150 (MQ=255) gACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCgg < 2:1977597/150‑1 (MQ=255) aCTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGgc > 2:4172852/1‑150 (MQ=255) aCTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGgc > 1:5201623/1‑150 (MQ=255) ctgctgATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGgcg > 2:5399320/1‑150 (MQ=255) ctgctgATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGgcg > 1:2890608/1‑150 (MQ=255) tgctgATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGgcgc > 2:3128238/1‑150 (MQ=255) gCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTc < 1:465784/150‑1 (MQ=255) gCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTc < 1:1003202/150‑1 (MQ=255) cTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTcc > 1:3095672/1‑150 (MQ=255) tttCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCt > 2:3794685/1‑150 (MQ=255) cGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTc > 1:1599509/1‑150 (MQ=255) gtgtTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTg < 2:907224/150‑1 (MQ=255) gtTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCa < 2:25788/150‑1 (MQ=255) gtTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCa < 1:1699310/150‑1 (MQ=255) gtTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACGTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCa < 2:1559112/150‑1 (MQ=255) tGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCAcc > 2:5207232/1‑150 (MQ=255) gccgccGGTTTCTCGCCTGACTGCCGATAAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGTTACTTAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCAccc < 1:3319738/150‑1 (MQ=255) ccgccgGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCg < 1:5672977/150‑1 (MQ=255) ccgccgGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCg > 1:3929589/1‑150 (MQ=255) ccgccgGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCg > 1:3561250/1‑150 (MQ=255) gccgGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGAc > 2:1602682/1‑150 (MQ=255) ccgGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACt < 2:3649957/150‑1 (MQ=255) cgGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTc > 2:5086702/1‑150 (MQ=255) cgGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACGTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGCGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTc < 2:1286445/150‑1 (MQ=255) ggTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCGTCTCCGCTTGCGTCGGCGCGGCAGTCCTGTCGCTGCACCCGACTCa > 2:2290246/1‑150 (MQ=255) ttCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTa > 2:2030883/1‑150 (MQ=255) tctcGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTAc < 1:255898/150‑1 (MQ=255) ctcGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACg < 1:4809149/150‑1 (MQ=255) ccTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGa > 1:1348609/1‑150 (MQ=255) cTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGaa > 1:1788695/1‑150 (MQ=255) tGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAg > 2:3609661/1‑150 (MQ=255) gACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGt < 1:2630353/150‑1 (MQ=255) tGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCt < 2:1706870/150‑1 (MQ=255) ccGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTgg < 2:344096/150‑1 (MQ=255) cGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGt < 2:4735043/150‑1 (MQ=255) cGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGt < 2:4854414/150‑1 (MQ=255) cAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGaaa < 1:5355987/150‑1 (MQ=255) aaaCCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAAc < 1:912213/150‑1 (MQ=255) aaaCCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAAc < 2:1740772/150‑1 (MQ=255) aaCCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACg > 2:271990/1‑150 (MQ=255) cccAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTa > 1:2957581/1‑150 (MQ=255) ccAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTACTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTAt < 2:5404381/150‑1 (MQ=255) cAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTATg < 1:2765340/150‑1 (MQ=255) cAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTATg < 2:1053148/150‑1 (MQ=255) gTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTATGCa > 1:3238669/1‑150 (MQ=255) tATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTATGCAg > 2:3639633/1‑150 (MQ=255) | CCCGCGTTTCTTATCCGATCTATCACATCGATAACATTGTTAAGCCGGTTTCCAAAGCGGGCCACGCGACTAAGGTTATCTTCCTGACTGCTGATGCTTTCGGCGTGTTGCCGCCGGTTTCTCGCCTGACTGCCGATCAAACCCAGTATCACTTCCTCTCTGGCTTCACCGCCAAACTGGCCGGTACTGAGCGTGGCATCACCGAACCGACGCCAACCTTCTCCGCTTGCTTCGGCGCGGCATTCCTGTCGCTGCACCCGACTCAGTACGCAGAAGTGCTGGTGAAACGTATGCAGGCG > CP009273/3527171‑3527469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |