| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,774,466 | G→C | 6.7% | intergenic (+89/‑109) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,774,466 | 0 | G | C | 6.7% | 750.6 / 9.3 | 216 | intergenic (+89/‑109) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base G (129/70); new base C (9/7); total (138/78) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 216 total aligned reads displayed.
GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCC > CP009273/3774319‑3774612 | ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCa < 1:4002770/150‑1 (MQ=255) tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc < 2:2036471/150‑1 (MQ=255) tGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCAAACCCACACCCTCAGGGGGGGGGGGCCGGTCGGCGCTGGTTGTACTCCCTCACACAGAAACGACACCGCAcgc > 1:2176575/1‑148 (MQ=255) gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc‑t < 1:896859/150‑1 (MQ=255) gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc‑t < 1:1585951/150‑1 (MQ=255) gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCActc‑t < 1:2563692/150‑1 (MQ=255) gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑ttt < 2:684872/150‑1 (MQ=255) gTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑ttt < 1:4671569/150‑1 (MQ=255) tAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑tttt < 2:5320388/150‑1 (MQ=255) aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑ttttt < 2:1424368/150‑1 (MQ=255) aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCACTACCCCAGGGCGAGGGGACCCTTAGGCGGGGTATTTACAACCGCACTCTGTAAAGACACCGCACAC‑ttttt > 2:4457850/1‑150 (MQ=255) aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGTAATGCGGCATAGTCGTTTGCGCCCCCACACCCGAAAACTCTCCCTAAGGGAGAGGGTCCCGTTAGGAGAGGTATGGACTCCCAAACTCTGAAACTACAACGCCATC‑tttttt > 2:4574806/1‑150 (MQ=255) aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTACCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCACAATCTGAAACGACACCGCACTC‑attttt > 2:3232199/1‑150 (MQ=255) agagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑ttttttt < 1:1039232/150‑1 (MQ=255) agagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCGAACCCACACCCACCCGGAGAGGGGACCCGTAGGCGCGGTAAGTAATCCCAAACTATGAAAAGCCACCGCACAA‑ttttttt > 2:1561868/1‑150 (MQ=255) agagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGCCCCCAAACCCACTCCCCCCGGGCGCGGGGGCCGGTCGGGGCGGTATGGACACCCTCACACAGAAACCACACCCCACAC‑atttttt > 2:4276617/1‑150 (MQ=255) ggtGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTtctc < 1:2882969/148‑1 (MQ=255) gTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTtctc < 2:4829196/150‑1 (MQ=255) tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGCAACCTAACCCACTCCCGCACGGGGGGGGGGCCGTTCGGCGCGGTATGTACAACCACACACTGAAACGACACCCCCCGA‑tttttttatacc > 1:2988211/1‑145 (MQ=255) gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCt < 1:3408060/150‑1 (MQ=255) gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCt < 1:4503282/150‑1 (MQ=255) ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTc < 1:5522616/150‑1 (MQ=255) cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCCCTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCg < 2:1831377/150‑1 (MQ=255) cTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCTCACCCAAACCCGCTCCCTCAGGGCGCGGGGACCGTTCGGCGCGGTATGTACTCCCACACTCTGAAACGACACCGCACAC‑GTTTTTTCTCCcgcg > 2:4596712/1‑150 (MQ=255) cGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCAACCAAAACCTCACCCGCAGGGAGTGGGGACCGTTCGGCGCTGTATGTTCTCCCGCACACTGTAACGACACCGCCCAC‑ATTTTTTATCCCACGccc > 1:4642086/1‑150 (MQ=255) gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCt < 1:661975/150‑1 (MQ=255) gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCt < 1:5391410/150‑1 (MQ=255) gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCt < 2:4368059/150‑1 (MQ=255) cACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCCCCCAAACCCTCTCCCACAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCACACTCAGAAACGACACCCCACAA‑TTTTTTTCTCCCACGCCCCTc > 2:4203931/1‑150 (MQ=255) cACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCGAACCCACTACCTCAGGGGGAGGGGACCGTTAGGCGCGGTATGTACTCCCACACTCGGAAACGACACCGCACAC‑ATTTTTTATCCCGCGCCCCTc > 2:2221973/1‑150 (MQ=255) ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCCACACCCAAACCCAAAACCACCGGGGGAGGGGGACGGTAGGCGCTTTATTTTCACCCACACAAAGAAACGACACCCCACAA‑TTTTTTTGTACCAAGCCCCTCCggg > 1:4088576/1‑150 (MQ=255) ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCggg < 1:2825930/150‑1 (MQ=255) ggCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCAACCTAACCCACACCCTCAGGGCGTGGGGACCGGTCGGCGGGGTATTGACGCCCGCACACTGTAACGACACCGCACAC‑ATTTTTTATCCCACGCCCCACCggg > 2:5474975/1‑150 (MQ=255) cagggCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCGAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAgg < 2:3531523/147‑1 (MQ=255) aTGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAggg < 2:2941379/150‑1 (MQ=255) ggCGACCGGGACTGCGGCAGAGGCGTTTGCGCCCCCTCACCCGCCCCCTCGCCCTCTGGGAGTGGGGACCGTTCGGCGCTGTATGGACTCCCTCCCTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc < 2:3512456/150‑1 (MQ=255) ggCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc < 1:4738801/150‑1 (MQ=255) gCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCg < 2:5408942/150‑1 (MQ=255) gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGAACCCAAAACCTAAACCTCAGGGTGTGGGGACCCTTCGGCGCTGTATGTTCTCCCTCACAATGTAACGACACCGCACTC‑TTTTTTTATCCCTCGCCCCTCCGGGGAGAGGGCAggg > 2:2743576/1‑150 (MQ=255) aaaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 1:3108352/150‑1 (MQ=255) aaaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCAACCGAAACCTCAGCCACAGGGAGTGGGGTCCGTTCGGCGCTGTATGTAATACCTCACTCTGAAAAGAAACCCCACAA‑TTTTTTTATACCACGCCCCTCAGGGGAGAGGGCCgggg > 2:1762247/1‑150 (MQ=255) aGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg < 2:1627801/150‑1 (MQ=255) gggAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg < 1:5113981/150‑1 (MQ=255) gggAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa < 1:3530338/150‑1 (MQ=255) gAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg < 2:1767388/150‑1 (MQ=255) aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAggg < 2:1987137/150‑1 (MQ=255) aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCAAAACCACTCCCACAGGGAGAGGGGACCGTTCGGCGCGGTATGTACTCCCACACACAGAAACGACACCCCACTC‑TTTTTTTATCCCACGCCCCACCCGGGCGAGGGCCGGGGGGAggg > 2:4874992/1‑150 (MQ=255) aTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCTGGGAGAGGGCCGGGGTGAgggg < 2:870440/150‑1 (MQ=255) aTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgggg < 2:57910/150‑1 (MQ=255) gCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGTAGAGGGCCGGGGTGAGGGGaa < 1:2407082/150‑1 (MQ=255) gCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa < 2:4079333/150‑1 (MQ=255) cGGCATAGTCGTTTGCGCCCCCACAACCAAAACCAAACCCACAGGGAGAGGGGACCGTTCGGCGCTGTATTTACACCCAAACTCTGAAAAGACACCGCACTC‑TTTTTTTCTACCTAGCCCCACCGGGGGGAGGGCCGGGGTGTGGGGaaa > 2:896152/1‑150 (MQ=255) ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa < 2:4654387/150‑1 (MQ=255) cATAGTCGTTTGCGCCCCCTCACCCAAACCCACACCCACAAGGAGAGGGGAACCTTCGGCGCTTTATTTACACCCACACACTGAAACGACCCCGCACAC‑TTTTTTTCTCCCTCGCCCCACCGGGGAGAGGGCCGGGGGGAGGGGAAAAgg > 2:5029065/1‑150 (MQ=255) aTAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc < 2:917508/150‑1 (MQ=255) aGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGCGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg > 2:1687594/1‑150 (MQ=255) ttGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGc > 1:3553088/1‑150 (MQ=255) cccccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCAcc > 1:1119950/1‑150 (MQ=255) tCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:3489508/1‑150 (MQ=255) tCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 2:2344059/1‑150 (MQ=255) tCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 2:2845205/1‑150 (MQ=255) aCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTCTGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTc > 2:3326528/1‑150 (MQ=255) aCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTc > 2:2692544/1‑150 (MQ=255) cTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc > 1:179806/1‑150 (MQ=255) aCCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTAt > 2:4525565/1‑150 (MQ=255) cccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc > 2:1265736/1‑150 (MQ=255) ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:802095/1‑150 (MQ=255) tcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc > 1:369095/1‑150 (MQ=255) cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc > 1:4368482/1‑150 (MQ=255) tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg > 1:4581320/1‑150 (MQ=255) cAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGTCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc > 1:3227447/1‑150 (MQ=255) aGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa > 1:5156688/1‑150 (MQ=255) ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACt > 1:5179947/1‑150 (MQ=255) gtggggggACCGTTGGGGGCTGTTTCCACCCCCAAACTCTCAACCCACACCCCACTT‑TTTTTTCCCCCCCCCCCCCGGGGGGGTGCGGGGGGGGGTGTGGCCACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa < 1:3716122/146‑1 (MQ=255) gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa > 1:3943144/1‑150 (MQ=255) gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa > 1:3943373/1‑150 (MQ=255) agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:2707417/1‑150 (MQ=255) agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTGTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATACTGCCCCCGCCCtca > 2:785412/1‑148 (MQ=255) gggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg > 2:1190204/1‑150 (MQ=255) gACCGTTCGGCGCTGTCTGTACTCCCTCACTCAGAAACGACACCGCACTC‑TTTATTTCTCCCGCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAATTTCTGCTATCCTGCCCCCGCACTAAGGGGGc > 2:2368392/1‑150 (MQ=255) gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc > 2:3712747/1‑150 (MQ=255) gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc > 1:4620229/1‑150 (MQ=255) aCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa > 1:1739030/1‑150 (MQ=255) cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc > 1:1982899/1‑150 (MQ=255) cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc > 1:4813611/1‑150 (MQ=255) tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACa > 1:1141691/1‑150 (MQ=255) atgtaCTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTCTCCTGCCCCCGCCCGAAGGGGGCAGTATGCTATACATCg > 2:3978509/1‑150 (MQ=255) atgaccTCCCTCACTTTCAAACTACCCCCCACTA‑TTTTTTCCCCCCCCGCCCCGCGGGGTTGTGGGCGGGGGTGTGGGGACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg < 2:922445/145‑1 (MQ=255) tCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt > 2:3799386/1‑150 (MQ=255) cccTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa > 1:3164288/1‑150 (MQ=255) tCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa > 2:1594704/1‑150 (MQ=255) aCTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAATGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc > 2:3793459/1‑150 (MQ=255) ctctGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc > 1:4200412/1‑150 (MQ=255) ctGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg > 2:2681937/1‑150 (MQ=255) taaaaCCACCCCTCAGTC‑TTTTTTTCCCCCGCCCCCCGCGGGTGTGGGGGGGGGGGTGCGGCAACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa < 1:5088286/148‑1 (MQ=255) caacccacacCCAACTT‑TTTTTTTCCCCCTCCCCCCGCGGGGTTGTGGGCGGGTGTTTGGGTACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaa < 2:2176575/144‑1 (MQ=255) aaaCGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa > 1:1301267/1‑150 (MQ=255) cGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTc > 1:3016737/1‑150 (MQ=255) acCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGcc > 2:2681011/1‑150 (MQ=255) acCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCAGCACTAAGGGGGAAGTATGCTAAACATCGTACTTTTCGACCCACAAATTCcccc > 2:3412543/1‑150 (MQ=255) | GGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCC > CP009273/3774319‑3774612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |