| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 312806 = | 260 (0.980) | 8 (0.030) | 6/276 | NT | 3.0% | pseudogene (75/684 nt) | ykgA | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| ? | CP009273 | 1462167 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCTTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/312940‑312806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT > CP009273/1462167‑1462313 TGCTTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTA < 1:1396488/149‑1TGCTTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTA < 1:1396869/149‑1 TTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATT < 1:2732465/149‑1 CTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAG > 1:4357110/1‑149 GCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTA < 2:1465888/149‑1 GCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTA < 2:1466197/149‑1 TACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGNGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC > 1:3419987/1‑149 GCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCC < 1:3153383/149‑1 tTTTGGATGTGCCACTATTTTTCCAGACATCTGTTATCACTTATCCCCTTACTAGCCCGCTGCCGCAGAGAGTCCCGTGGCGAGCGTTAACCCAGCGCACTTTGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTT < 2:2994996/148‑1 TTTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCATCGCACTATGCGGATGCCATTCGTAATAATGCTCGAACGCCTCTGCAAGGTTCTTT > 1:1029606/1‑149 TGCTTTTGCCTTCGCCCTTGCTATTTTTGATACACTTAGGGCCCAGGGTATAACGAAAATGTGCGATATGACAAAGAATTAACGGAGAATGAGATGATCAGGCAGAAGATTCTACAGCAGCTCCTGGAGTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/312940‑312806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTT > CP009273/1462167‑1462313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |