| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4615996 = | 258 (0.970) | 7 (0.030) | 6/262 | NT | 2.8% | coding (268/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4615992 | 243 (0.960) | coding (264/1383 nt) | radA | DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGCGCATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4616150‑4615996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCAGCA < CP009273/4615992‑4615845 GCGCGCATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCAC > 2:4209354/1‑149GCGCGCATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCAC > 2:4298075/1‑149 GCGCATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGC < 1:4405487/149‑1 CATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGC > 1:2050993/1‑149 CATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGC > 1:2051134/1‑149 ATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC > 1:1163834/1‑149 ATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC > 2:2946133/1‑149 CACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTA < 2:558002/149‑1 CACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTA < 2:557988/149‑1 TTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCA > 1:2743863/1‑149 CTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAA > 1:4134701/1‑149 CCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTG > 2:768773/1‑149 TTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATAT < 2:2375844/149‑1 TTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGC > 2:4439096/1‑149 AGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCAT < 2:4295372/149‑1 AGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCAT < 2:3484943/149‑1 CGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGAC < 1:1936994/149‑1 CGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGAC < 2:3538340/149‑1 GCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACG > 1:1196804/1‑149 GCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACG > 1:692422/1‑149 GCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACG > 1:692402/1‑149 GCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCAGAGACGCTCGTTACGCGCCACCAATGGCGACG > 1:3636046/1‑149 CCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGC > 2:1142719/1‑149 CGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCCTAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCA > 1:3008989/1‑149 CGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCA > 1:3009203/1‑149 GCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCCTTGGCGACGCAG > 2:3824220/1‑149 GCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCAG > 2:3824160/1‑149 CCTAGTACGCGGTCGAACTCTTTAAATCCGGTGTAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCAGC > 2:1176945/1‑149 CTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCAGCA < 1:4682267/149‑1 CTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCAGCA < 1:4209354/149‑1 GCGCGCATTGCCACCTGTTGCAGCGACTCTTCGCCGGTGACATACAGCGTTTTCATCTGCTGGGCCAGTTTGCACAGCGTTTGCAGTAGCAGCGTGGATTTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4616150‑4615996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTCTTCAAGGCTGATATCGGAGAGTTTCTGGACTTTTGCCACCCCGGCGCTACCGGCATAGCCGCTGAGACGCTCGTTACGCGCCACCATTGGCGACGCAGCA < CP009273/4615992‑4615845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |