| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 780,417 | G→T | 14.0% | T119T (ACC→ACA) | ybgS ← | putative periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 780,417 | 0 | G | T | 14.0% | 647.6 / 11.2 | 233 | T119T (ACC→ACA) | ybgS | putative periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base G (67/123); new base T (41/2); total (108/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.17e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 238 total aligned reads displayed.
GAGTGCGCCATGACGAGTCATCCCTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATCCGAATGCAGCATTG > CP009273/780269‑780565 | ccATGACGAGTCATCCCTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGa < 2:2189257/149‑1 (MQ=255) ttGACGTTTCATCCCTTTATGATTCTCACTTAACTTTATGTCATCTTTCTGCTTTTAGAAGTGTTTAATTAAATGGGAGAGACTCCGCTCTCCCATTATTTGCTATTTTGCTGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGTca < 2:453970/148‑1 (MQ=255) cGAGTCATCCCTTAATGATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGAcatcat < 2:2868333/149‑1 (MQ=255) gAGTCATCCCTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCatt < 2:38705/149‑1 (MQ=255) gTCATCCCTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGACGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGTATCGACATCattat > 2:4320030/1‑149 (MQ=255) tCATCCCTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGGTTTGTATAGACAACattatt > 1:3156501/1‑149 (MQ=255) aTCCCTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGa < 1:74632/149‑1 (MQ=255) cccTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGGATAGACAACAATATTGAtt > 1:2010576/1‑148 (MQ=255) ccTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGc < 1:2869238/149‑1 (MQ=255) ttAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCa < 1:1029927/149‑1 (MQ=255) tAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATAGACATCATTATTGTTGACAt > 1:973697/1‑149 (MQ=255) aaTTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATc < 2:1036762/149‑1 (MQ=255) attattCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCCTTATTGGCGATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGTATCGACATCATTATTGATGCCATC‑a > 2:735080/1‑149 (MQ=255) attattCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACAACATTATTTATGCCAAC‑a > 2:725970/1‑149 (MQ=255) gtagtctcACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑Ac < 1:3566572/145‑1 (MQ=255) attCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCg > 2:1920627/1‑149 (MQ=255) attCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACAACAGTATTTATGACAAA‑ACCg > 1:3665206/1‑149 (MQ=255) attCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTTGTTTAGACAACAGTATTGATTCCaaaaccc > 1:2782254/1‑143 (MQ=255) ttCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCgg < 2:1566052/149‑1 (MQ=255) cACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTATAGAAAAAATTATTTATGACATC‑ACCGGtttt > 2:2801854/1‑148 (MQ=255) aCTTAACTTTATGACAACATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGt < 2:3968290/149‑1 (MQ=255) ttAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTAc < 1:66613/149‑1 (MQ=255) tAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTATAGAAATAATTATTTATTACATA‑ACCGGttttttcc > 2:3070840/1‑144 (MQ=255) aaCTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATTCCATC‑ACCGGTTTTTAACt > 1:2092759/1‑149 (MQ=255) cTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTTTAGACATAAGTATTTTTGCCAAA‑ACCCGTTTGTTCCttt > 1:1619499/1‑149 (MQ=255) cTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCAATATTGATGCCATC‑ACCCGGTTGTACCttt > 2:175737/1‑149 (MQ=255) tttATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTATAGACAACATTATTTATTCCCTC‑ACCGGGTTGTAACgttt > 1:2046549/1‑149 (MQ=255) ttATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCttttt < 2:3456585/149‑1 (MQ=255) tATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTa < 1:4032067/149‑1 (MQ=255) aCATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTTGCTTTTTATTGa > 1:2919938/1‑149 (MQ=255) aCATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGa < 1:2688394/149‑1 (MQ=255) aCATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGa < 1:4660467/149‑1 (MQ=255) aCATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTTGTATAGACAACATTATTGATGCCAAC‑ACCCGTTTTTAACTTTTTATTGa > 1:1103390/1‑149 (MQ=255) catcatACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGat < 1:2369308/149‑1 (MQ=255) tcatACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGatat < 2:1128628/149‑1 (MQ=255) tcatACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCAATAATGATGCCCTC‑ACCCGGTTGTACCTTTTTATTGatat > 2:2877282/1‑149 (MQ=255) tGCTTTTAGAAGTGAAAATTTAAAAGGGTGAGACTACGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGTTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATA‑ACGGGTTTGTACCTTTTTTTTGATATCCGGAc < 2:989292/149‑1 (MQ=255) tGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGAc < 2:2215397/149‑1 (MQ=255) ttttAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCATTTTATTTATATCCGGCCAGc > 2:4140375/1‑149 (MQ=255) ttttAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTTGTATCGACAACAATATTTATGCCCAC‑ACCGGGTTGTACCATTTTATTGATATAACGACAGc > 2:1977715/1‑149 (MQ=255) ttAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGa < 1:2657547/149‑1 (MQ=255) aGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTATAGACATCATTATTGATGCCCTC‑ACCCGGTTGTACCATTTTATTGATATCCGGACACCGAcc > 1:187430/1‑149 (MQ=255) aGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGAcc < 1:3079981/149‑1 (MQ=255) aGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGTATCGACATCATTATTGATTCCAAC‑ACCCGTTTGTACCTGTTTATTTATATCCGGACAGCGAcc > 1:2527973/1‑149 (MQ=255) tttaaaaaTTAAAAGGGAGAGAATCCGCTCTACCATTATTTGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCt < 1:1332992/146‑1 (MQ=255) gTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCt < 2:792994/149‑1 (MQ=255) gTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCt < 1:1609570/149‑1 (MQ=255) gTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCt < 1:4350463/149‑1 (MQ=255) tGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCtt < 2:230988/149‑1 (MQ=255) gAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTAGTGCGTGGTACCGTCGGTTTTGGGATCGACAAAATTTTTGATGGCCTA‑TCCGGGTGTTACCTTTTTTTTGTGTTCCGGGAACCGACCaacatt > 2:1214938/1‑144 (MQ=255) aaaTTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATAGTCATCATTATTTTTGCCATA‑ACCGGGTTGTAACTTTTTATTTTTTTACGGACAGCGACCATCATTGca > 2:4052963/1‑149 (MQ=255) aaTTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGcac < 2:3243879/149‑1 (MQ=255) ttAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACAt < 2:2832543/149‑1 (MQ=255) ttAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACAt < 1:126065/149‑1 (MQ=255) aaaaGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTCTCGACATCCTTATTGTTGCCATC‑ACCGGTTTTTACATTTTTATTTATATGCTGACAGCGACCATAATTGCACATgg > 2:1840254/1‑149 (MQ=255) aaaGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATTCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGgt > 2:1045935/1‑149 (MQ=255) aaGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTTGTATCGACATCAATATTGATTCCATCAACCGGTTT‑TACCTTTTTATTTATATACGGACAGCGACCATCTTTTCACAAGgtg > 2:2388374/1‑149 (MQ=255) aGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGTATCGACATCATTATTTTTGCCAAC‑ACCCGGTTGTACCTTTTTATTGTTATCCGGACAGCGACCAACATTGCACAATgtgt > 1:2202658/1‑149 (MQ=255) gggAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTTTTTCCATC‑ACCGGTTTGTACCTTTTTATTTTTATCAGGACAGCGACCATCATTTCACATGGTGtt > 2:2525407/1‑149 (MQ=255) gggAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGTATCGACAACATTATTTATTCCAAC‑ACCCGGTTGTTCCTTTTTATTGTTATACCGACAGCGACCAACTTTTCACCTGGTGtt > 1:4227196/1‑149 (MQ=255) ggAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTc < 2:3367288/149‑1 (MQ=255) gagaCTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGTATCGACATAATTATTTATGCCAAC‑ACCGGTTTGTTCCTTTTTATTTATATACGGACAGCGACCATCATTGCACAAGGTGTTCttt > 1:3280334/1‑148 (MQ=255) gagaCTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTTGGATCGACAACATTATTTTTTCCAAC‑ACCCCGTTGGACCATTTTATTGTTATACGGACACCGACCCTATATGCACATTGTGttgttg > 2:1200513/1‑149 (MQ=255) agaCTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTtgt < 2:3999802/149‑1 (MQ=255) aCTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGc < 1:59127/149‑1 (MQ=255) aCTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGTATCGACAACATTATTGATGCCATC‑ACCCGTTTGTACCATTTTATTGATATCCGGACAGCGACCAACATTGCACAAGGGGTTCTTGTGc > 2:1455756/1‑149 (MQ=255) ccGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGctct < 2:605345/149‑1 (MQ=255) gCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTc < 2:3960134/149‑1 (MQ=255) ctctCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCa < 2:2772436/149‑1 (MQ=255) ctcCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATAATTATTGATTCCATC‑ACCGGTTTGTAACTTTTTATTTTTATACGGTCAGCGAACATATTTGGACATGGGGTTCTTGTGCTCTTAAta > 2:143635/1‑148 (MQ=255) ctcCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACAACAATATTGATGCCATA‑ACCCGGTTGTACCTTTTTATTGATATCCGGACACCGACCATCTTTGCACATTGTGTTCTTGTTCTAttaaac > 2:534251/1‑145 (MQ=255) tcCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCt < 1:2283914/149‑1 (MQ=255) tcCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGTATAGACATCCTTATTTATGCCAAA‑ACCCGGTTGTACCATTTTATTTATATACCGACACCGACCAACTTTGAACAATTTGTTCTTTTGCTCTTCATCt > 1:172223/1‑149 (MQ=255) cccATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCtt < 1:4074094/149‑1 (MQ=255) cccATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCtt < 1:4255152/149‑1 (MQ=255) cATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTAACGACATCAATATTGATGCCAAC‑ACCGGGTTGTAACATTTTATTGATAAACCGACAGCGACCAACTTTGCACAAGGTGTTCTTTTGCGATTCATCattt > 2:3732822/1‑148 (MQ=255) attattGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTgg < 1:671937/149‑1 (MQ=255) ttattGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGt < 1:3866640/149‑1 (MQ=255) tattGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTc < 1:4034225/149‑1 (MQ=255) attGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGGTGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCa < 1:1477650/149‑1 (MQ=255) gCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTcc < 1:3807037/149‑1 (MQ=255) ttttGCAGGGTTACTGCGTGGTACCGTCGGGTTTGGGATCGACATCATTATTGATTCCCTC‑ACCGGTTTGTTACTTTTTTTTTTTATGAGGTCAGCGTCCATCTTTTAACATGGTTTTGTTTTGGTCTTCATATTTTGTGATTTCGTCa > 2:863744/1‑149 (MQ=255) tttGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCAt < 1:2152160/149‑1 (MQ=255) aGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTc < 1:3395762/149‑1 (MQ=255) gggTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCa < 2:1599801/149‑1 (MQ=255) gTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCAtt < 1:446405/149‑1 (MQ=255) gTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCAtt < 1:2990839/149‑1 (MQ=255) gTTACTGCGTGGTACCGTCGGTTTTGGTATAGACATCAATATTTATTCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCATTGCACAAGGTGTTCTTGTGCTCTTCATCTTTTGTCATTCCGTCATTGTTCAtt > 2:3093110/1‑149 (MQ=255) tACTGCGTGGTACCGTCGGGTTTTGTATCGACATCAATATTTATGCCATA‑ACCCGGTTGTACCATTTTATTTATATCCGGACAGCGACCATCTTTGCACATTGTGTTATTTTGCTCTTCATCTTTGGTAATTCCGTCAATGTTAAttta > 1:1953810/1‑147 (MQ=255) tGGTACCGTTGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCa < 2:2576908/149‑1 (MQ=255) tGGTACCGTCTGTTTTTGTATCGAGATCATTATTGCTTCCATC‑ACCGGTTTTTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCa < 1:2583975/149‑1 (MQ=255) tGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCa < 1:895740/149‑1 (MQ=255) tGGTACCGTAGGTTTTGGTATAGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCa < 2:235031/149‑1 (MQ=255) ggTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCAt < 1:2862336/149‑1 (MQ=255) tACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATcc < 2:742414/149‑1 (MQ=255) gTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATCCGAATgcag > 1:3049985/1‑149 (MQ=255) ttttGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATCCGAATgcagc > 2:3660776/1‑149 (MQ=255) tGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATCCGAATGCAGCAtt < 1:1381237/149‑1 (MQ=255) tGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATCCGAATGCAGCAtt < 1:2388374/149‑1 (MQ=255) ggTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATCCGAATGCAGCATtg < 2:315486/149‑1 (MQ=255) | GAGTGCGCCATGACGAGTCATCCCTTAATTATTCTCACTTAACTTTATGACATCATACTGCTTTTAGAAGTGAAAAATTAAAAGGGAGAGACTCCGCTCTCCCATTATTGGCTATTTTGCAGGGTTACTGCGTGGTACCGTCGGTTTTGGTATCGACATCATTATTGATGCCATC‑ACCGGTTTGTACCTTTTTATTGATATCCGGACAGCGACCATCTTTGCACATGGTGTTCTTGTGCTCTTCATCTTTGGTCATTCCGTCATTGTTCATTGAAGAACCATCCGAATGCAGCATTG > CP009273/780269‑780565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |