Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,207,977 C→A 13.9% intergenic (‑518/+182) iraM ← / ← ycgX RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,207,9770CA13.9% 641.3 / 17.3 217intergenic (‑518/+182)iraM/ycgXRpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
Reads supporting (aligned to +/- strand):  ref base C (53/123);  new base A (39/2);  total (92/125)
Fisher's exact test for biased strand distribution p-value = 3.44e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 220 total aligned reads displayed.

TGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGCCTTACTG  >  CP009273/1207829‑1208124
                                                                                                                                                    |                                                                                                                                                   
tGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATAAAAAAAc                                                                                                                                                     >  1:595360/1‑149 (MQ=255)
tGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAc                                                                                                                                                     <  2:2324534/149‑1 (MQ=255)
 gAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACg                                                                                                                                                    <  1:302958/149‑1 (MQ=255)
 gAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACg                                                                                                                                                    >  2:1164349/1‑149 (MQ=255)
 gAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACg                                                                                                                                                    >  2:3499944/1‑149 (MQ=255)
 gAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACg                                                                                                                                                    <  1:3118393/149‑1 (MQ=255)
   gTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTa                                                                                                                                                  <  2:1818026/149‑1 (MQ=255)
   gTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAAGTa                                                                                                                                                  >  2:3296374/1‑149 (MQ=255)
    ttATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTAt                                                                                                                                                 <  2:4518696/149‑1 (MQ=255)
       tataGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCaa                                                                                                                                              >  2:711709/1‑149 (MQ=255)
              aTGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACCTTATAAAATAAAGTATCAAAAGTaaa                                                                                                                                       >  1:4677557/1‑149 (MQ=255)
                gATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGt                                                                                                                                     <  1:1090156/149‑1 (MQ=255)
                 aTTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTg                                                                                                                                    <  2:4402106/149‑1 (MQ=255)
                 aTTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTg                                                                                                                                    <  1:1837095/149‑1 (MQ=255)
                    tAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAAAGTTATAAAATAACGTATAAAAAGTCAAGTGAta                                                                                                                                 >  1:1505542/1‑148 (MQ=255)
                     aaCCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATca                                                                                                                                <  1:377196/149‑1 (MQ=255)
                      aCCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAATGTTTAACCTTATAAAATAAAGTATCCAAAGTCAAGTGATcac                                                                                                                               >  1:4559925/1‑149 (MQ=255)
                        cTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACAt                                                                                                                             <  1:2685609/149‑1 (MQ=255)
                         tGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATTACGTATCAAAAGTCAAGTTATaacaat                                                                                                                            >  2:3533848/1‑147 (MQ=255)
                              cTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATGTTAACCCTTATAAAATAAAGTATCAAAAGTCAAGTGATAACAATTCaaa                                                                                                                       >  2:3587773/1‑149 (MQ=255)
                               tGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAATGTTAAACGTTATTAAAAAAACTATAAAAAGAAAAGTGATAACAATTaaaaa                                                                                                                      >  1:2084394/1‑148 (MQ=255)
                                ggCTAAAATACATATAACCGGATGATGAATAAACCAAAATAAATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCAGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAata                                                                                                                     <  2:900930/149‑1 (MQ=255)
                                  cTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATc                                                                                                                   <  2:3232802/149‑1 (MQ=255)
                                   tAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAAACTTATAAAATAACGTATAAAAATTAAAGTGATAAAATTTAAAatataa                                                                                                                  >  1:326092/1‑147 (MQ=255)
                                   tAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCa                                                                                                                  >  2:2276843/1‑149 (MQ=255)
                                   tAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATAAGTTAACCCTTATAAAATAACGTATCAAAAGTCAAGTGATAACAATTCAAatataa                                                                                                                  >  2:2353727/1‑147 (MQ=255)
                                    aaaaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAATTCAAGTGATCACATTTCAAATATCaa                                                                                                                 >  2:662666/1‑149 (MQ=255)
                                      aaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGt                                                                                                               <  2:3424797/149‑1 (MQ=255)
                                      aaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGt                                                                                                               <  1:3398075/149‑1 (MQ=255)
                                      aaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATAAAGt                                                                                                               >  2:269237/1‑149 (MQ=255)
                                       aTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGtt                                                                                                              <  1:3895618/149‑1 (MQ=255)
                                       aTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATGTTAACCGGTATAAAATAAAGTATCAAAATTCAAGTGATCACATTTCAAATATCAAGtt                                                                                                              >  2:573966/1‑149 (MQ=255)
                                        tACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAAGTATAAAAATTCAAGTGATCACATTTAAAATATAAAtttt                                                                                                             >  2:2054415/1‑148 (MQ=255)
                                         atatatAACCTGATGATGACTAAACCAAAATACATGTGAGTTAATTATTGAATCTGAGGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACATTTATAAAATAACGTATCAAAAGTCTAGTGATCTGATTTAAATTATCAAGTTGa                                                                                                            <  2:3676479/147‑1 (MQ=255)
                                            tataACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAg                                                                                                         <  1:142453/149‑1 (MQ=255)
                                             ataACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTATAAATATTTTAAACCGTATAAAAAAAAATAAAAAAAATCCAGAGATAACAATTAAAATATAAAATTTTTAGt                                                                                                        >  1:4021328/1‑149 (MQ=255)
                                              taACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTa                                                                                                       >  2:311017/1‑149 (MQ=255)
                                                   ggATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGt                                                                                                  <  2:231704/149‑1 (MQ=255)
                                                    gatgatGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTTAACCTTATAAAATAACCTATCAAAAGTCAAGTGATAACATTTAAAAAAACAAGTTGTTAGTTTTatgc                                                                                                 >  1:162690/1‑146 (MQ=255)
                                                        atgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATATGTTAAAACTTATAAAAAAAAGTATAAAAAATAAAGGTATCAAAATTAAAAAATAAAATTTATATTATTAGtattgt                                                                                             >  1:1211788/1‑144 (MQ=255)
                                                        atgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGt                                                                                             <  2:1882269/149‑1 (MQ=255)
                                                        atgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGt                                                                                             <  2:2373049/149‑1 (MQ=255)
                                                         tgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTg                                                                                            <  1:3315967/149‑1 (MQ=255)
                                                           aCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGat                                                                                          <  1:4082141/149‑1 (MQ=255)
                                                            cTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATAAAGTTGATAGTATTAGTCTGGTGatt                                                                                         >  2:1888610/1‑149 (MQ=255)
                                                             tAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGatta                                                                                        <  1:2376060/149‑1 (MQ=255)
                                                              aaaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGattat                                                                                       <  2:1999019/149‑1 (MQ=255)
                                                              aaaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGattat                                                                                       <  2:3949081/149‑1 (MQ=255)
                                                               aaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAAGTATCAAAAGTCAATTGATCACATTTAAAATATCAAATTTATAGTATTAGTCTGGTGattatt                                                                                      >  2:4514407/1‑149 (MQ=255)
                                                                aCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTAAAAATTTTTAACCTTATAAAATAAAGTATAAAAAATCAAGTGATAAAAATTAAAAAATAAAGTTGATAGTATTATTATGGTGTttattt                                                                                     >  2:1595050/1‑149 (MQ=255)
                                                                 ccAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGAttattta                                                                                    <  1:3408572/149‑1 (MQ=255)
                                                                 ccAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGAttattta                                                                                    <  2:2706861/149‑1 (MQ=255)
                                                                 ccAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGAttattta                                                                                    <  1:3562166/149‑1 (MQ=255)
                                                                   aaaaTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTATCAAAAGTCAAGTGATCAAATTTCAAATATAAAGTTGATAGTATTAGTCTGGTGATTATTTATg                                                                                  >  2:4250656/1‑149 (MQ=255)
                                                                    aaaTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAACCGTTATAAAATAACGTATAAAAACTCAAGTGAAAACATTTAAAATATAAAGTTGATAGTATTATTCTGGTGATTATTTATgg                                                                                 >  2:3180874/1‑149 (MQ=255)
                                                                          aTGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACa                                                                           <  2:2087551/149‑1 (MQ=255)
                                                                           tgtgCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTGTAAATATGTTAAACGTTATAAAAAAACGGATCAAAACTCAAGTGATCACAATTAAAAAATAAATTTGATAGTATTAGTATGGTGATTATTTATTGGTGaaaa                                                                          >  2:2797040/1‑149 (MQ=255)
                                                                           tgtgCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACaa                                                                          <  1:2422226/149‑1 (MQ=255)
                                                                            gtgCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAAt                                                                         <  1:2984884/149‑1 (MQ=255)
                                                                              gCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTATCAAAAGTAAAGTGATCACATTTCAAATATCAATTTGATAGTATTATTATGGTGTTTATTTATGGGTGACAATaa                                                                       >  2:2418299/1‑149 (MQ=255)
                                                                                gTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAACCCTTATAAAATAACGTAAAAAAATTAAACTTATAACAAATCAAAAATAAAATTGATATTATTATTCTGGTGTTTATTTATGGGTGACAaaaaaa                                                                     >  2:2738507/1‑149 (MQ=255)
                                                                                gTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAAAGTATCAAAAGTCAAGTGATCACATTTCAAATATAAAGTTGATAGTATTAGTATGGTGATTATTTATGGGTGACAATaaaa                                                                     >  2:4202478/1‑149 (MQ=255)
                                                                                  tAATTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAg                                                                   <  2:3064225/149‑1 (MQ=255)
                                                                                  tAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAg                                                                   <  1:1893418/149‑1 (MQ=255)
                                                                                   aaGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAAGTATAAAAAGTAAAGTGATCACAATTAAAATATCAAGTTGATAGTATTAGTATGGTGATTATTTATGGGTGAAAAAAAAAAGa                                                                  >  2:4434229/1‑149 (MQ=255)
                                                                                         tGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTAt                                                            <  2:3449369/149‑1 (MQ=255)
                                                                                          gAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACCTTATAAAATAAAGTATAAAAAGTAAAGTGATAAAATTTAAAATATAAATTTTATATTATTATTCTGGTGATTATTTATTGGTGAAAATAAAAATAAAGTAtt                                                           >  2:211867/1‑149 (MQ=255)
                                                                                          gAAACGGACGTGTGGCACGGCCGTGGTTTTTATTAATATGTTAAACGTTTTAAAAAAAAGGATAAAAAGTCAAGTGATGACATTTAAAAAATAAATGTTTTATTATTATTGTGGTGATTTTTTTTTGGTGTGAAAAAAAAAAAAATAtt                                                           >  1:4496309/1‑149 (MQ=255)
                                                                                           aaaCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTa                                                          <  1:1639306/149‑1 (MQ=255)
                                                                                             aCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAat                                                        <  2:4279172/149‑1 (MQ=255)
                                                                                             aCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAat                                                        <  1:4033230/149‑1 (MQ=255)
                                                                                              cGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatc                                                       <  1:3524638/149‑1 (MQ=255)
                                                                                                 aCGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatcatc                                                    <  2:126061/149‑1 (MQ=255)
                                                                                                    tgtgGCACGGCCGTTGTTTTTATAAAAATGTTAAACGTTATAAAAAAACGTATCAAAAGGCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTATTCTGGTGATTATTTATTGGTGAAAATAAAAAGACAGTAATAATCATCCAt                                                 >  2:3829745/1‑149 (MQ=255)
                                                                                                     gtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATa                                                <  1:3937710/149‑1 (MQ=255)
                                                                                                          aCGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGAt                                           <  1:723007/149‑1 (MQ=255)
                                                                                                            ggCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAg                                         <  1:2219347/149‑1 (MQ=255)
                                                                                                               cGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtct                                      >  1:2513218/1‑149 (MQ=255)
                                                                                                                gttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtctc                                     <  2:3129808/149‑1 (MQ=255)
                                                                                                                gttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtctc                                     <  2:532510/149‑1 (MQ=255)
                                                                                                                 ttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTctct                                    <  1:2355441/149‑1 (MQ=255)
                                                                                                                 ttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTctct                                    <  1:3077070/149‑1 (MQ=255)
                                                                                                                    tttttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCa                                 >  2:1734585/1‑149 (MQ=255)
                                                                                                                    tttttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCa                                 >  2:2092003/1‑149 (MQ=255)
                                                                                                                       ttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACtt                              <  1:1114925/149‑1 (MQ=255)
                                                                                                                       ttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACtt                              >  2:2446953/1‑149 (MQ=255)
                                                                                                                          taAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTa                           >  1:1384814/1‑149 (MQ=255)
                                                                                                                          taAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTa                           <  2:386682/149‑1 (MQ=255)
                                                                                                                          taAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTa                           >  2:2836210/1‑149 (MQ=255)
                                                                                                                           aaaTATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTAt                          <  1:3429901/149‑1 (MQ=255)
                                                                                                                            aaTATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTAtt                         <  1:4609101/149‑1 (MQ=255)
                                                                                                                                  ttAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATTGGTGACAATAAAAATACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCaat                   >  1:1321525/1‑147 (MQ=255)
                                                                                                                                  ttAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCAtt                   >  1:3458288/1‑149 (MQ=255)
                                                                                                                                   tAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTa                  >  1:1283375/1‑149 (MQ=255)
                                                                                                                                    aaCCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTAt                 <  1:3534327/149‑1 (MQ=255)
                                                                                                                                      ccGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGc               <  2:109553/149‑1 (MQ=255)
                                                                                                                                         ttATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTaa            <  1:1912071/149‑1 (MQ=255)
                                                                                                                                            taAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGc         <  2:3542322/149‑1 (MQ=255)
                                                                                                                                              aaaTAACGTATCAAAAGTCACGTGATCACATTTCAAATATCAAGTTGATCGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGCCt       >  2:1310587/1‑149 (MQ=255)
                                                                                                                                               aaTAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGCCtt      <  1:3557807/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCATTATGCTAATGCCTTACTG  >  CP009273/1207829‑1208124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: