| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,178,942 | A→T | 6.2% | intergenic (‑162/+61) | thiM ← / ← rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,942 | 0 | A | T | 6.2% | 685.0 / 6.3 | 215 | intergenic (‑162/+61) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Reads supporting (aligned to +/- strand): ref base A (71/128); new base T (13/2); total (85/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 222 total aligned reads displayed.
CATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATGTGTTCC > CP009273/2178794‑2179090 | tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAAt < 2:3862848/149‑1 (MQ=255) tAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAAt < 2:629373/149‑1 (MQ=255) aCGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTGGGATGTTAAAAAGCAGAGGAGGCTGGTTAttt > 1:3461099/1‑147 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTcc < 2:939130/149‑1 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGATGATAAATAGCAGAGGAGGTTGGGTATGtgc > 1:3122387/1‑147 (MQ=255) gTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTTGGGTGTTAAAAAGCACAGGCGGATGGTAATGtgc > 1:97051/1‑147 (MQ=255) cAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑cgc < 2:159077/149‑1 (MQ=255) aaTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGATGTTAAATAGCCGAGGGGGTTGGTTATGTCCAGCCCC‑cgcg > 2:1246123/1‑149 (MQ=255) aaTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGCTGATAAAACGCACAGGAGGAGGGTAAAGTCCAGCGCA‑cccc > 2:4530299/1‑146 (MQ=255) aTGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGt < 1:3578551/149‑1 (MQ=255) tGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGtt < 1:850829/149‑1 (MQ=255) aCCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGt < 1:973251/149‑1 (MQ=255) gtggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTTGGGTTTTAAAAAGCCGAGGCGGATTGTAATGTGCAGCGCA‑CGCGtttttaaat > 1:2495584/1‑142 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAg < 1:28821/149‑1 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAg < 1:208134/149‑1 (MQ=255) ggtCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGGGGGGGTGCGATGATAAAACGCAGATGAGGATGGTACTGTCCCGCGCC‑CCCGGTGGAAACGAg > 2:2827382/1‑149 (MQ=255) tgcGTGACTTCCCTACGCTGGCATTATCCAGATCTGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGTGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGa < 1:2833286/147‑1 (MQ=255) gTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGaaaa < 1:4353181/149‑1 (MQ=255) gTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGCTGATAAAAATCAGAGGAGGATGGTAATTTCCACCGCA‑CCCGATGTAAAAAAGGaaaa > 1:3034912/1‑149 (MQ=255) tGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGaaaaa < 2:2323488/149‑1 (MQ=255) tGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGaaaaa < 1:2124939/149‑1 (MQ=255) gACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATACATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAAc < 1:1890961/149‑1 (MQ=255) tCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTTCGATGATAAATCGCAGAGGAGGATGGTAATGTACAGCGCA‑CGCCTTGTAAACGAGGAAAAACGGCa > 2:4124842/1‑149 (MQ=255) ccTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGt < 2:1917938/149‑1 (MQ=255) ccTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGCGATGATAAAACGCAGAGGGGGATGGTAATGTCCACCGCA‑CCCGTTGTAAACGCGGAAAAACAGCCGt > 2:4441273/1‑149 (MQ=255) cttcGCTGGCATTATCCTGTTCAGGTGTTTCGGGTTTTTGTCAGCCTTCACGCAGATGGGCACCCGGTTTCGTTTGGTTGCGATGATAAATCGCAGAGTTGGTTTTTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGtt < 2:964819/146‑1 (MQ=255) tACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTGGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGttt < 1:4184781/149‑1 (MQ=255) tACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATTATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGttt < 1:1929478/149‑1 (MQ=255) cGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTa < 2:3870225/149‑1 (MQ=255) ggCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGCGATGATAAAAAGCAGCGGAGGATGGTAAATTCCCGCGCA‑CCCGGTGGAAACCAGGAAAAACCGCACTTTTACAAt > 2:2777845/1‑149 (MQ=255) aTTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTGCGGTGATAAAAAGCAGAGGAGGTTTGTTATGTCCCCCGCC‑CCCGGTGTAAAACAGGAAAAAAGGCAGTTTTACAAAcgc > 1:3903356/1‑149 (MQ=255) ttATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATcgcg < 2:772240/149‑1 (MQ=255) tATCCAGATCTGGTGATACGGGTATTTCTCAGCCTTCCCGCAGATGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGCGGAGGTTGGTATTGTCCAGCGCA‑CGCGTTGTAAACGAGTAAAAACGGCAGTTTTACAATCGCGt < 1:3618662/149‑1 (MQ=255) aTCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGtt < 2:3670423/149‑1 (MQ=255) ccAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTtaa < 1:3399049/149‑1 (MQ=255) gATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTGGATGATAAAAAGCAGAGGAGGCTGGTAATGTACACCGCC‑CCCGGTGTAAAAGAGGAAAAACGGCAGTTTTAAAAAAGCGGtaataa > 2:2047021/1‑149 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTGGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAat < 1:3242460/149‑1 (MQ=255) tCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATTGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAat < 2:3992051/149‑1 (MQ=255) cAGGTGATAGGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCTTTGTAAACTAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAatt < 1:2421080/149‑1 (MQ=255) cAGGTGATACGGGTATTTCTCCGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAatt < 1:1496352/149‑1 (MQ=255) cAGGTGATACGGGTATTTCTCAGCCNTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAatt < 1:1994355/149‑1 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGGTGCGCTGTTAAATAGCCGAGGAGGATGGTAAAGTACCCCGCA‑CCCGGTGTAAAAGAGGAAAAAAGGCAGGTTTACAATCGCGGTAATAAaata > 2:3470253/1‑149 (MQ=255) aGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTTGTTTCGTTGATTAAACGCAGAGGAGGGTTGTAATGTCCCTAGCA‑CGCCGTTTAAACGAGGAAAAAAGGCAGTTTTAAAAAAGCGATAATAAaata > 2:3470232/1‑149 (MQ=255) gTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGTGGTTGGTAATGTCCAGCGCA‑CGGGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAattatt < 1:139468/149‑1 (MQ=255) gTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAattatt < 2:4602978/149‑1 (MQ=255) gTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGGTTCGATGCTAAAAAGCACAGGAGGATGGTAATGTCCCGCCCC‑CCCCGTGTTAAAAACGAAAAAAGGCACTTTTAAAAAACCCGTAATAAaatatt > 1:3749916/1‑149 (MQ=255) tGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTAttt < 1:168872/149‑1 (MQ=255) gATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGTTTCGATGTTAAAAAGCAGAGGAGGATGGTTATTTCCCGCGCC‑CCCGTTGTAAAACATGAAAAACGGCCGGTTTAAAAACGCGGTAAAAAATTAtttt > 2:2865819/1‑148 (MQ=255) aCGGTTATTTCTCAGCCTTCACGCAGACGGGCACCCCGAGTGGTTTGGTTGCGATGATAAATCGCTGTGGTGGATGTTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGata < 1:2167088/149‑1 (MQ=255) gggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGCGATGGTAAATAGCAGAGGAGGAGGGTAATGTCCAGCGCA‑CGCCGTGTAAACGAGGAAAAACCGCAGTTTTACAAACGCGTTAAAAAATTATTTGatata > 2:3069522/1‑149 (MQ=255) ggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGatatat < 1:184463/149‑1 (MQ=255) ggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGTGGGTGGGGTGATAAAAAACACAGGAGGGTGGTAAAGTCCAGCGCA‑CCCCTTGTAAAACAGGAAAAAAAGCACATTTTCAAACGCCTTAAAAAAATATTTTttatat > 1:4193863/1‑149 (MQ=255) ggTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTGGGGTTGGGATTATAAAAAGCCGATGAGGCTGGTAATGTCCACCGCA‑CCCCTTGGAAAACAGGAAAAAAGGCCGGTTTAAAAACGCGGTAATAAAATATTTGttatat > 2:3214976/1‑149 (MQ=255) tttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAAt < 2:3461099/149‑1 (MQ=255) ttatcAGCCTTCACGCAGAAGGGCACCCCGAGTCTTTTGGTTGCTATGATAAATCGCAGAGGAGGTTGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATc < 1:56870/146‑1 (MQ=255) ttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATc < 2:467100/149‑1 (MQ=255) ttCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATc < 1:1949203/149‑1 (MQ=255) tcAGCCTTCACGCTGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGTGGTGGATGGTAATGTCAAGCGCA‑CGCGTTGTAAACGAGGAAACACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAg < 1:2061196/149‑1 (MQ=255) aGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCa < 2:2919050/149‑1 (MQ=255) aGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCa < 2:3733072/149‑1 (MQ=255) aGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCa < 2:1397347/149‑1 (MQ=255) gCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCAc < 1:1909190/149‑1 (MQ=255) tCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTc < 1:3777862/149‑1 (MQ=255) tCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTc < 2:1589749/149‑1 (MQ=255) gCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGaa < 1:387345/149‑1 (MQ=255) gAAGGGCACCCCGAGTCGTTTTGTTTGGATTATAAAAAGCACAGGAGGATGGTATATTCCAGCCCACCCCGTTTTAAAC‑AGGAAAAAACGCAGTTTTACAAGAGCGTTAATAAAATATTTTTTATATTAATACAGCAACAACAGAACgc > 2:1231122/1‑148 (MQ=255) ggCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATc < 2:434089/149‑1 (MQ=255) cACCCCTTGTCGTTTGGTTGCGATGATAAATCGCTGTGTAGGATGGTATTTTCCAGGGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCa < 1:4500712/149‑1 (MQ=255) cACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCa < 2:2237541/149‑1 (MQ=255) ccGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtc < 2:4187307/149‑1 (MQ=255) ccGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtc < 2:2663292/149‑1 (MQ=255) aGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGAtcttc < 2:1543973/149‑1 (MQ=255) ggTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTTTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtt < 2:4376797/149‑1 (MQ=255) gTTGCGATTATAAATCGCAGAGGAGTATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGATGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGttt < 1:1575564/149‑1 (MQ=255) ttGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt > 1:3317407/1‑149 (MQ=255) ttGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGtttt < 2:3903210/149‑1 (MQ=255) tGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTa < 1:4279206/149‑1 (MQ=255) cGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGc > 2:4070996/1‑149 (MQ=255) atgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTc < 2:2348319/149‑1 (MQ=255) atgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTc < 1:935159/149‑1 (MQ=255) tgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCa > 2:3709332/1‑149 (MQ=255) tgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCa > 2:2139958/1‑149 (MQ=255) tgatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCa > 2:3903785/1‑149 (MQ=255) gatAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCAt > 2:2381614/1‑149 (MQ=255) atAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATc > 2:158272/1‑149 (MQ=255) tAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATcc < 1:1246123/149‑1 (MQ=255) aTCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATccccc > 1:2676184/1‑149 (MQ=255) tCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCt > 1:1087079/1‑149 (MQ=255) gCAGATGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTgg < 2:536116/149‑1 (MQ=255) gCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTgg > 2:2573338/1‑149 (MQ=255) agagGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTg > 2:1078382/1‑149 (MQ=255) agagGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTg > 1:2621271/1‑149 (MQ=255) aggaggATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGaa < 1:1727478/149‑1 (MQ=255) ggaggaTGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAAc > 2:835678/1‑149 (MQ=255) aggaTGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGa < 2:1930066/149‑1 (MQ=255) aTGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGAtgt > 1:320607/1‑149 (MQ=255) ggTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATgtgt < 2:1912617/149‑1 (MQ=255) tAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATGTGTTc < 2:3016360/149‑1 (MQ=255) aaTGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATGTGTTcc < 2:4575449/149‑1 (MQ=255) aaTGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATGTGTTcc < 2:1053990/149‑1 (MQ=255) | CATAACGTGAAGAAGCAATGACCTGGTGGTCCGTGACTTCCCTACGCTGGCATTATCCAGATCAGGTGATACGGGTATTTCTCAGCCTTCACGCAGAAGGGCACCCCGAGTCGTTTGGTTGCGATGATAAATCGCAGAGGAGGATGGTAATGTCCAGCGCA‑CGCGTTGTAAACGAGGAAAAACGGCAGTTTTACAATCGCGTTAATAAATTATTTGATATATGAATCCAGCACCTTCAGAACGACATCCAGATCTTCTTCACGTTTTAGCTCATCCCCCTGGTGAACGATGTGTTCC > CP009273/2178794‑2179090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |