Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,876,760 C→T 79.8% G246G (GGG→GGA)  casA ← CRISP RNA (crRNA) containing Cascade antiviral complex protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,876,7600CT79.8% 569.0 / 142.8 247G246G (GGG→GGA) casACRISP RNA (crRNA) containing Cascade antiviral complex protein
Reads supporting (aligned to +/- strand):  ref base C (23/27);  new base T (97/100);  total (120/127)
Fisher's exact test for biased strand distribution p-value = 7.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 251 total aligned reads displayed.

TTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATT  >  CP009273/2876612‑2876905
                                                                                                                                                    |                                                                                                                                                 
tttCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATc                                                                                                                                                   <  1:133436/149‑1 (MQ=255)
  tCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATtcc                                                                                                                                                 <  2:2915094/149‑1 (MQ=255)
   ccacAACCTCCCCTGTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGCTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTGTCCTGTCAACAGCAAGAACATTTACCAATCCCa                                                                                                                                                >  2:3974689/4‑149 (MQ=255)
    cTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCaa                                                                                                                                               >  1:2641490/1‑149 (MQ=255)
    cTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCaa                                                                                                                                               >  1:4065334/1‑149 (MQ=255)
     tCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAAt                                                                                                                                              >  1:3292776/1‑149 (MQ=255)
     tCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAAt                                                                                                                                              >  2:4569505/1‑149 (MQ=255)
      cAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATg                                                                                                                                             >  1:1248565/1‑149 (MQ=255)
       aaCCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACGGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATgg                                                                                                                                            >  1:765000/1‑149 (MQ=255)
          cTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGAt                                                                                                                                         <  1:572605/149‑1 (MQ=255)
          cTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGAt                                                                                                                                         <  1:2478535/149‑1 (MQ=255)
           tCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCTGATGGGGCCATAGCCCATTAACTGTAAAGTTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATc                                                                                                                                        <  1:1279980/149‑1 (MQ=255)
           tCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATc                                                                                                                                        <  2:2421223/149‑1 (MQ=255)
             cccTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGc                                                                                                                                      <  1:3686946/149‑1 (MQ=255)
              ccTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCa                                                                                                                                     >  2:3918029/1‑149 (MQ=255)
               cTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCAt                                                                                                                                    <  2:2636189/149‑1 (MQ=255)
                tttCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATa                                                                                                                                   >  1:2227911/1‑149 (MQ=255)
                tttCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATa                                                                                                                                   <  1:102916/149‑1 (MQ=255)
                    ttGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTc                                                                                                                               >  1:4509006/1‑149 (MQ=255)
                      gACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCaa                                                                                                                             <  1:2935360/149‑1 (MQ=255)
                         tGTTACCAGACTAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAAGTCCAATGGGATCGCATAATTCAatat                                                                                                                          <  2:2115195/149‑1 (MQ=255)
                            tACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATgcg                                                                                                                       >  1:3645632/1‑149 (MQ=255)
                             aCCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATgcgc                                                                                                                      >  1:2516665/1‑149 (MQ=255)
                               cAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTg                                                                                                                    <  2:1578708/149‑1 (MQ=255)
                                 gACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGt                                                                                                                  <  2:2740748/149‑1 (MQ=255)
                                 gACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGt                                                                                                                  <  1:4119925/149‑1 (MQ=255)
                                    aaGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGc                                                                                                               >  2:2801550/1‑149 (MQ=255)
                                    aaGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGc                                                                                                               <  2:2704792/149‑1 (MQ=255)
                                     aGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGGTGGTTGcc                                                                                                              <  1:1485372/149‑1 (MQ=255)
                                     aGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGcc                                                                                                              >  1:1977182/1‑149 (MQ=255)
                                     aGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGcc                                                                                                              >  1:260390/1‑149 (MQ=255)
                                     aGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGcc                                                                                                              >  1:1548474/1‑149 (MQ=255)
                                     aGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGcc                                                                                                              >  2:2580929/1‑149 (MQ=255)
                                      ggggAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCa                                                                                                             >  2:3418713/1‑149 (MQ=255)
                                        ggAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGa                                                                                                           >  2:377126/1‑149 (MQ=255)
                                         gAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGaa                                                                                                          >  2:2312419/1‑149 (MQ=255)
                                         gAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGaa                                                                                                          <  2:3220004/149‑1 (MQ=255)
                                          aaTGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAAt                                                                                                         >  1:1298719/1‑149 (MQ=255)
                                                gATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCa                                                                                                   <  1:1062012/149‑1 (MQ=255)
                                                 aTGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCAc                                                                                                  <  1:611249/149‑1 (MQ=255)
                                                     ggCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGAc                                                                                              <  1:3025364/149‑1 (MQ=255)
                                                       ccATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGAcca                                                                                            >  2:1888929/1‑147 (MQ=255)
                                                        cATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACaaa                                                                                           <  1:748789/149‑1 (MQ=255)
                                                         aTAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAAc                                                                                          >  2:124261/1‑149 (MQ=255)
                                                              ccATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATACTTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAAt                                                                                     <  1:2275963/149‑1 (MQ=255)
                                                                  tAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGAc                                                                                 <  1:4204012/149‑1 (MQ=255)
                                                                  tAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGAc                                                                                 <  2:3544960/149‑1 (MQ=255)
                                                                   aaCTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATTGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACAACGGACAAACCCAATTGACg                                                                                >  1:798145/1‑149 (MQ=255)
                                                                      tGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAg                                                                             >  1:2252469/1‑149 (MQ=255)
                                                                      tGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAg                                                                             <  2:1261547/149‑1 (MQ=255)
                                                                        tAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCa                                                                           >  2:2107776/1‑149 (MQ=255)
                                                                          aaGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAgg                                                                         >  1:3878480/1‑149 (MQ=255)
                                                                          aaGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAgg                                                                         >  2:3668322/1‑149 (MQ=255)
                                                                              tAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGATGAAGCAGGtata                                                                     >  2:2589682/1‑149 (MQ=255)
                                                                              tAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGtata                                                                     <  2:2212148/149‑1 (MQ=255)
                                                                              tAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGtata                                                                     <  2:3865300/149‑1 (MQ=255)
                                                                                aaTTTTTCCTTAAGAAAACCGGTATAACGCAAAGTGCGTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCAGAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGa                                                                   <  2:3600720/149‑1 (MQ=255)
                                                                                  tttttCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACt                                                                 >  1:3349307/1‑149 (MQ=255)
                                                                                     ttCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCAt                                                              >  2:3533554/1‑149 (MQ=255)
                                                                                      tCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCAtt                                                             <  2:2494409/149‑1 (MQ=255)
                                                                                        cTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTgg                                                           <  2:2988524/149‑1 (MQ=255)
                                                                                          tAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGAc                                                         <  2:1646093/149‑1 (MQ=255)
                                                                                           aaGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACt                                                        >  2:2262913/1‑149 (MQ=255)
                                                                                            aGAAAACCGGTATAACTCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACtt                                                       <  1:4027404/149‑1 (MQ=255)
                                                                                            aGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACtt                                                       >  2:68274/1‑149 (MQ=255)
                                                                                               aaaCCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGAt                                                    >  2:3489993/1‑149 (MQ=255)
                                                                                                 aCCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAg                                                  >  2:239962/1‑149 (MQ=255)
                                                                                                 aCCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAg                                                  >  2:4211391/1‑149 (MQ=255)
                                                                                                   cGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGt                                                <  2:2029769/149‑1 (MQ=255)
                                                                                                   cGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGt                                                >  2:2877504/1‑149 (MQ=255)
                                                                                                     gTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGttt                                              >  1:338894/1‑149 (MQ=255)
                                                                                                        taACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAAt                                           <  2:491954/149‑1 (MQ=255)
                                                                                                         aaCGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATc                                          >  1:2235969/1‑149 (MQ=255)
                                                                                                           cGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCa                                        >  1:1948682/1‑149 (MQ=255)
                                                                                                           cGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCa                                        >  1:4281072/1‑149 (MQ=255)
                                                                                                               aaTTGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCaggta                                    <  2:3677697/149‑1 (MQ=255)
                                                                                                                 ttGCTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCaggtagg                                  >  1:3515713/1‑149 (MQ=255)
                                                                                                                    cTTTCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAggttg                               <  1:4247950/149‑1 (MQ=255)
                                                                                                                    cTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAggttg                               >  2:1461093/1‑149 (MQ=255)
                                                                                                                    cTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAggttg                               >  1:1875848/1‑149 (MQ=255)
                                                                                                                      ttCCTGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAggttggt                             >  1:2864809/1‑149 (MQ=255)
                                                                                                                          tGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTc                         >  2:724840/1‑149 (MQ=255)
                                                                                                                          tGTCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTc                         <  2:4674813/149‑1 (MQ=255)
                                                                                                                          tGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTc                         <  2:385196/149‑1 (MQ=255)
                                                                                                                           gTCCACAGCAAGAAAATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTcc                        <  2:4272204/149‑1 (MQ=255)
                                                                                                                            tCCACAGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCg                       <  2:3156484/149‑1 (MQ=255)
                                                                                                                               acaGCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTAt                    >  2:2829811/1‑149 (MQ=255)
                                                                                                                               acaGCAAGAACATTTACCAATTCCAATGGGATCGCATAAGTCAATCTGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTAt                    <  2:4004472/149‑1 (MQ=255)
                                                                                                                                  gCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTAtgtg                 >  1:4583551/1‑149 (MQ=255)
                                                                                                                                  gCAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTAtgtg                 <  2:1763830/149‑1 (MQ=255)
                                                                                                                                  gCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTAtgtg                 >  1:3087206/1‑149 (MQ=255)
                                                                                                                                   cAAGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGa                <  1:1718636/149‑1 (MQ=255)
                                                                                                                                     aGAACATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGAtt              >  2:436295/1‑149 (MQ=255)
                                                                                                                                        aCATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCAt           >  2:4112065/1‑149 (MQ=255)
                                                                                                                                        aCATTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCAt           <  2:228754/149‑1 (MQ=255)
                                                                                                                                          atgtACCAATTCCCATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTa         <  2:3958404/146‑1 (MQ=255)
                                                                                                                                          aTTTACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTa         <  1:906797/149‑1 (MQ=255)
                                                                                                                                           tttACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAg        <  2:1168317/149‑1 (MQ=255)
                                                                                                                                             tACCAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGa      <  1:3418713/149‑1 (MQ=255)
                                                                                                                                                cAATTCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAAt   <  2:1042076/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
TTTCCTCAACCTCCCCTTTCTTGACTGTTACCAGACAAGGGGAATGCGGATGGGGCCATAGCCCATTAACTGTAAAGGTAAATTTTTCCTTAAGAAAACCGGTATAACGCAAATTGCTTTCCTGTCCACAGCAAGAACATTTACCAATCCCAATGGGATCGCATAATTCAATATGCGCTGGTTGCCAGAATAGACCACGGACAAACCCAATTGACGAAGCAGGTATAGACTCATTGGACTTGATAGGTTTAATCCAGGTAGGTTGGTTTTCCGTATGTGATTCATTAGGAAATT  >  CP009273/2876612‑2876905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑