| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,243,810 | C→T | 18.9% | intergenic (+75/‑111) | yqjK → / → yqjF | uncharacterized protein/putative quinol oxidase subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,243,810 | 0 | C | T | 18.9% | 539.7 / 109.1 | 217 | intergenic (+75/‑111) | yqjK/yqjF | uncharacterized protein/putative quinol oxidase subunit |
| Reads supporting (aligned to +/- strand): ref base C (87/89); new base T (25/16); total (112/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
Only 100 of 221 total aligned reads displayed.
GACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTACTGGTAGCGCG > CP009273/3243662‑3243958 | gACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAAc < 2:4248163/149‑1 (MQ=255) gcgGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTaataat > 2:1091091/1‑149 (MQ=255) cgGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAatc < 1:293594/149‑1 (MQ=255) gTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAatcat > 1:4358933/1‑149 (MQ=255) gTTTTGGCGTATGGAGCGCCTGGCGGCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTACCTTCCCGCTGGCCGGAGCCATGCCGGCCTTATCCCTCAAATTTTTGGAAGATTTTGGACCGTTTTCCGTGCTAACCagcat > 2:14113/1‑149 (MQ=255) ggCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTc > 1:668870/1‑149 (MQ=255) ggCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTc < 2:3183602/149‑1 (MQ=255) ggCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTc < 2:1801524/149‑1 (MQ=255) gCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTca > 1:341282/1‑149 (MQ=255) ggAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGt < 2:3638100/149‑1 (MQ=255) gAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGtt > 2:4548470/1‑149 (MQ=255) gcgcCTGGCGTCTGGTAAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTa < 1:1606838/149‑1 (MQ=255) tGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGAtt < 1:4005949/149‑1 (MQ=255) ggCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtc > 2:1918121/1‑149 (MQ=255) gCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtct < 2:3422190/149‑1 (MQ=255) gTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATtctct > 2:839903/1‑149 (MQ=255) gTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATc < 1:1456852/149‑1 (MQ=255) ttAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCg > 2:2149218/1‑149 (MQ=255) aaaCGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACa > 1:4603288/1‑149 (MQ=255) aaCGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAg > 1:3038364/1‑149 (MQ=255) aCGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGc < 2:1726584/149‑1 (MQ=255) cGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCa < 1:4136743/149‑1 (MQ=255) cccTCAAGCAGCAACAGCTTCGCGGTTCACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAacg > 1:4175312/1‑149 (MQ=255) cTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAacgac < 1:3445398/149‑1 (MQ=255) cTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAacgac < 2:2495675/149‑1 (MQ=255) cAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGc > 2:2835696/1‑149 (MQ=255) gcagcaACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTaa > 2:3902759/1‑149 (MQ=255) aaCAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACcg > 1:1610202/1‑149 (MQ=255) aaCAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACcg > 2:3696842/1‑149 (MQ=255) ccAGATTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACcgc < 2:1513156/148‑1 (MQ=255) cAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACcgcg > 1:1865401/1‑149 (MQ=255) ttCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCAt < 2:1791360/149‑1 (MQ=255) ttCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCAt < 2:4126447/149‑1 (MQ=255) ttCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGAATTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCAt > 1:1366871/1‑149 (MQ=255) ggTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcac > 2:3549773/1‑149 (MQ=255) ggTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcac < 1:349435/149‑1 (MQ=255) ggTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcac > 1:4112261/1‑149 (MQ=255) ggTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcac < 2:4591123/149‑1 (MQ=255) ggTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcac > 1:4540518/1‑149 (MQ=255) ggTTAACTTCCCTCGGGCCGGAGCCATTCCGGCCTTAGCCCTCAAATTTTTTGAATATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACCGCAACGACGCTAATACCGCGCCATTGcac < 1:3769165/149‑1 (MQ=255) gTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGcaca < 2:1811719/149‑1 (MQ=255) ttAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACaa > 1:362995/1‑149 (MQ=255) tctGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATc > 1:4187020/1‑149 (MQ=255) ctGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTCATACCGCGCCATTGCACAAAAAAACAATca > 1:4598117/1‑149 (MQ=255) tGGCCGGAGCCATTCCGGCCTTATCCGTGTTATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATcag < 2:1992857/149‑1 (MQ=255) tGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAATATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATcag < 1:2362480/149‑1 (MQ=255) ggCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATcagc > 2:4031945/1‑149 (MQ=255) ccGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATcagcag < 2:347119/149‑1 (MQ=255) ggAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGcc < 2:2891978/149‑1 (MQ=255) gAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCt > 1:1946266/1‑149 (MQ=255) gAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCt < 2:2731642/149‑1 (MQ=255) ccATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAg < 1:2453609/149‑1 (MQ=255) ccATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAg < 1:3758958/149‑1 (MQ=255) tCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGgc > 2:4626050/1‑149 (MQ=255) tCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGgc < 2:2032822/149‑1 (MQ=255) ccTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGt < 2:3374510/149‑1 (MQ=255) cTTATCCCTCAAATTTTTTGAATATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTg < 1:1204375/149‑1 (MQ=255) cTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTg > 1:2562290/1‑149 (MQ=255) cTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTg > 2:1484992/1‑149 (MQ=255) cTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTg > 2:4472109/1‑149 (MQ=255) cTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAAACAGCAGCCTGAGTGGCGCAGTg > 2:2709574/1‑149 (MQ=255) tCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGgaga < 2:648344/149‑1 (MQ=255) tCCCACAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGgaga < 1:3297710/149‑1 (MQ=255) cccTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGagag < 1:1496756/149‑1 (MQ=255) ccTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGt < 2:2972007/149‑1 (MQ=255) ccTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGATAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGt < 2:3603615/149‑1 (MQ=255) cTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTa > 2:3132160/1‑149 (MQ=255) tCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTat > 2:1251308/1‑149 (MQ=255) aaaTTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTatga > 2:423947/1‑149 (MQ=255) aaTTTTTTGAATATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTatgat < 1:3686129/149‑1 (MQ=255) aaTTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTatgat < 1:3685481/149‑1 (MQ=255) aaTTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTatgat > 2:3008612/1‑149 (MQ=255) aaTTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTatgat < 1:2803690/149‑1 (MQ=255) aTTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTatgatg > 2:2063458/1‑149 (MQ=255) ttttttGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTAtgatga > 1:4247451/1‑149 (MQ=255) ttttttGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTAtgatga > 1:4506176/1‑149 (MQ=255) ttttttGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTAtgatga > 1:2165421/1‑149 (MQ=255) tttttGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGaa > 1:1313621/1‑149 (MQ=255) ttGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGaaaaa > 2:1323407/1‑149 (MQ=255) aaGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAAtt > 1:1371475/1‑149 (MQ=255) tttttGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTagaa > 1:2060651/1‑149 (MQ=255) tttttGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTagaa > 1:1706747/1‑149 (MQ=255) ttttGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTagaag > 1:3336146/1‑149 (MQ=255) ttttGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTagaag > 1:931723/1‑149 (MQ=255) ttttGACAGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTagaag > 1:999527/1‑149 (MQ=255) ttttGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTagaag < 1:890550/149‑1 (MQ=255) ttGACAGTTTTCCTTGCTAACAATCATCATTCACCCCGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGAt < 2:3690900/149‑1 (MQ=255) tGACATTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCCTCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATg < 1:3154460/149‑1 (MQ=255) tGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATg < 1:2149217/149‑1 (MQ=255) gACAGTTTTCCTTGCTAACAATCATCATTCACCACGGTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACACTCCGCAGGCTGAGTGGCGCAGTGGAGAGTATGATTAAAAAATTAGAAGATGt < 2:3258131/149‑1 (MQ=255) aCAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGtt < 1:1480950/149‑1 (MQ=255) aGTTTTCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTgg > 1:623817/1‑149 (MQ=255) aGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTgg < 1:1844314/149‑1 (MQ=255) gTTTTCCTTGCTAACAATCATCATTCACCCCGTTTAAGATTCTCTCCATCGACACCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGgt < 2:3687265/149‑1 (MQ=255) ttCCTTGCTAATAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTa < 1:4492259/149‑1 (MQ=255) tCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTAc < 2:3962866/149‑1 (MQ=255) tCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTAc < 2:4502310/149‑1 (MQ=255) cTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTACTg > 1:839760/1‑149 (MQ=255) cAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTACTGGTAgcgcg > 2:579437/1‑149 (MQ=255) cAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTACTGGTAgcgcg > 1:1125806/1‑149 (MQ=255) | GACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTCAAATTTTTTGAAGATTTTTGACAGTTTTCCTTGCTAACAATCATCATTCACCACGTTTATGATTCTCTCCATCGACAGCAACGACGCTAATACCGCGCCATTGCACAAAAAAACAATCAGCAGCCTGAGTGGCGCAGTGGAGAGTATGATGAAAAAATTAGAAGATGTTGGTGTACTGGTAGCGCG > CP009273/3243662‑3243958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |