| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,423,592 | C→T | 6.1% | S202S (TCG→TCA) | aroE ← | dehydroshikimate reductase, NAD(P)‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,423,592 | 0 | C | T | 6.1% | 1049.3 / 36.5 | 295 | S202S (TCG→TCA) | aroE | dehydroshikimate reductase, NAD(P)‑binding |
| Reads supporting (aligned to +/- strand): ref base C (137/139); new base T (10/8); total (147/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
Only 100 of 296 total aligned reads displayed.
AGAGAAGAAAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGG > CP009273/3423444‑3423739 | gagaAGAAAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCg > 1:4417662/1‑149 (MQ=255) gagaAGAAAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCg < 1:2147316/149‑1 (MQ=255) agaagaAAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGa > 1:1140056/1‑149 (MQ=255) gaagaaAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGAt < 1:4356415/149‑1 (MQ=255) agaaAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGa < 1:147781/149‑1 (MQ=255) agaaAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGa < 1:551605/149‑1 (MQ=255) aaGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACgg > 1:2761789/1‑149 (MQ=255) aaGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACgg < 2:2933227/149‑1 (MQ=255) cATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCACTAAATGCCTGGATGAATGAGCGATGACGGGATc > 1:3180535/1‑149 (MQ=255) aGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCg > 1:140626/1‑149 (MQ=255) gccTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAat > 1:3128127/1‑149 (MQ=255) gccTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAat > 1:1001179/1‑149 (MQ=255) tgtgCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATc < 1:284475/149‑1 (MQ=255) caccaGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATcaccac < 2:1146256/149‑1 (MQ=255) caccaGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATcaccac < 2:165424/149‑1 (MQ=255) aGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCGCTGAt > 2:3090955/1‑149 (MQ=255) aTTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGcc < 2:2718475/149‑1 (MQ=255) ttCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCa > 2:538214/1‑149 (MQ=255) ttCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCa < 2:945432/149‑1 (MQ=255) tCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCAc < 2:1044318/149‑1 (MQ=255) tCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCAc < 1:1509487/149‑1 (MQ=255) tCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCAc < 1:1855762/149‑1 (MQ=255) ccTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACt > 1:3022063/1‑149 (MQ=255) cTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTg < 1:4148826/149‑1 (MQ=255) tAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGTGATGACGGGATCGCCGGAATATCACCACTGATGCCACTgg < 2:3841944/149‑1 (MQ=255) aaaCCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGa < 2:4355569/149‑1 (MQ=255) aaaCCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGa < 2:427846/149‑1 (MQ=255) aCCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGGCGGGATCGCCGGAATATCACCACTGATGCCACTGGATg < 1:1342196/149‑1 (MQ=255) aCCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATg < 2:389513/149‑1 (MQ=255) tCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGc > 1:51332/1‑149 (MQ=255) tCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGc < 1:2453560/149‑1 (MQ=255) gCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCAtt < 2:1292422/149‑1 (MQ=255) aTTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATtaa < 2:3254082/149‑1 (MQ=255) ttACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATtaat > 2:3927445/1‑149 (MQ=255) ttACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATtaat > 2:2423505/1‑149 (MQ=255) cTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATga < 2:12773/149‑1 (MQ=255) tGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGAt < 2:1272969/149‑1 (MQ=255) tGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGAt > 2:4544207/1‑149 (MQ=255) tGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGAt < 2:480587/149‑1 (MQ=255) aGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCa > 1:1782085/1‑149 (MQ=255) tCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGTGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACt > 1:3193165/1‑149 (MQ=255) gctgctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCa < 2:2994787/149‑1 (MQ=255) gctgctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCa > 1:4470801/1‑149 (MQ=255) gctgctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCa < 1:2838284/149‑1 (MQ=255) ctgctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCAt > 1:2590469/1‑149 (MQ=255) gctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGa > 2:2365007/1‑149 (MQ=255) gctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGa < 1:3550888/149‑1 (MQ=255) gctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGa < 1:2603335/149‑1 (MQ=255) ctCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGAc < 2:2635293/149‑1 (MQ=255) cacaCCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCt > 1:1617250/1‑149 (MQ=255) cacaCCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCt > 2:2135729/1‑149 (MQ=255) cacCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCAACACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTc > 2:3509731/1‑149 (MQ=255) cATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGTGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAg < 1:4594842/149‑1 (MQ=255) aTGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGt > 2:1991869/1‑149 (MQ=255) ccAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCg < 2:1773098/149‑1 (MQ=255) cAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGt > 2:4055294/1‑149 (MQ=255) aGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGTGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTc > 1:761711/1‑149 (MQ=255) aGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTc < 2:1940709/149‑1 (MQ=255) aaGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATa > 1:494243/1‑149 (MQ=255) ggAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACt > 2:411529/1‑149 (MQ=255) ggAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACt > 1:3030819/1‑149 (MQ=255) ggAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACt < 1:2504249/149‑1 (MQ=255) gAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTc > 1:1023366/1‑149 (MQ=255) tttttCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAAc > 2:1032819/1‑149 (MQ=255) tttCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGc > 2:3789877/1‑149 (MQ=255) tttCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGc > 2:885692/1‑149 (MQ=255) cTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGa > 1:686560/1‑149 (MQ=255) tttCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGaa < 2:3456843/149‑1 (MQ=255) tttCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGaa < 1:419908/149‑1 (MQ=255) tttCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGaa < 2:3170425/149‑1 (MQ=255) cTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATAc < 2:1986916/149‑1 (MQ=255) gATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGTGATGACGGGATCGCCGGAATATCACCACTGATGCAACTGGATGTTGCATTAATAATGAGATCAAACTCATTAACTTCCAGTTCGTCCATACTCAACGCCTGAATAATg > 2:3457527/1‑149 (MQ=255) aGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCa < 1:230994/149‑1 (MQ=255) aGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCa > 2:2832896/1‑149 (MQ=255) gAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAg < 2:3111883/149‑1 (MQ=255) aaCATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAgt > 1:2231228/1‑149 (MQ=255) aCATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAgtg > 2:3642210/1‑149 (MQ=255) gCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACa > 2:4301264/1‑149 (MQ=255) aTAAATGCCTGGATGAATGAGTGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAAtt > 1:3882534/1‑149 (MQ=255) tAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAAttt > 1:2931622/1‑149 (MQ=255) aaTGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAg > 1:2024147/1‑149 (MQ=255) aaTGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAg < 1:1200802/149‑1 (MQ=255) aTGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGc > 2:611860/1‑149 (MQ=255) tGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGcc < 1:3489846/149‑1 (MQ=255) tGCATGGATGAATGAGTGATGACGTGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGACTGAATACTGCCAGTGTGCGCAAACAATTTatca > 2:2801393/1‑146 (MQ=255) gCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCa > 2:1519/1‑149 (MQ=255) ccTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCaa < 2:339965/149‑1 (MQ=255) cTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAAc > 2:1107790/1‑149 (MQ=255) ggATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAActc < 2:2896738/149‑1 (MQ=255) gATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAActct < 1:3364012/149‑1 (MQ=255) tgaatgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTc > 1:595354/1‑149 (MQ=255) tgaatgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTc < 2:757608/149‑1 (MQ=255) tgaatgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTc < 2:184367/149‑1 (MQ=255) gaatgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTcc < 1:1751302/149‑1 (MQ=255) gaatgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTcc < 1:2167942/149‑1 (MQ=255) gaatgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTcc < 1:972673/149‑1 (MQ=255) atgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCcgc > 2:2314383/1‑149 (MQ=255) tgaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCcgcg > 2:2051262/1‑149 (MQ=255) gaGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTGATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCcgcgc > 1:3448684/1‑149 (MQ=255) aGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCcgcgcg > 1:3972304/1‑149 (MQ=255) | AGAGAAGAAAGGCATGAGCCGCCTGTGCCACCAGCATTCCTAAACCATCAGCATTACGCTTTGAGCCTCGCTGCTCACACCATGCCAGAAAAGGAGTTTTTCCTTTCTGATAGAACATGTCATAGCAATAAATGCCTGGATGAATGAGCGATGACGGGATCGCCGGAATATCACCACTGATGCCACTGGATGTTGCATTAATAATGAGATCAAACTCATGACCTTCCAGTTCGTCCATACTCAACGCCTGAATACTGCCAGTGTGCGCAAACAATTTAGCCAACTCTTCCGCGCGG > CP009273/3423444‑3423739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |