| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,214 | T→G | 7.6% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,214 | 0 | T | G | 7.6% | 317.1 / 2.1 | 157 | intergenic (+72/+80) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base T (44/96); new base G (3/14); total (47/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 163 total aligned reads displayed.
ACAAACCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAT > CP009273/3498066‑3498362 | aaCCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑cc > 2:2681617/1‑149 (MQ=255) cGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCt < 1:2373965/149‑1 (MQ=255) cACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCAccc < 2:3336575/149‑1 (MQ=255) aCGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCt < 2:913105/149‑1 (MQ=255) tctcCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCGCACCCaaaa > 2:4222422/1‑148 (MQ=255) tctcCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTG‑GCCCCCACCCCaaa > 1:3676352/1‑148 (MQ=255) tcCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAAccc < 2:3359144/149‑1 (MQ=255) gAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCctct < 1:419805/149‑1 (MQ=255) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCtctc < 1:1979478/149‑1 (MQ=255) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCtctc < 1:1118644/149‑1 (MQ=255) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCtctc < 2:1742629/149‑1 (MQ=255) aaCTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCACACCCAAAcccacaa > 2:2336381/1‑145 (MQ=255) ctctTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCCCAACCCAAACCACAc‑cc > 2:848556/1‑149 (MQ=38) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAg < 1:3779416/149‑1 (MQ=255) tGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCTAACCCAAAACCACAA‑CCCaaaag > 2:1930665/1‑147 (MQ=38) gCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAggg < 2:2288296/149‑1 (MQ=255) gCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAggg < 1:283061/149‑1 (MQ=255) gcCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAg < 1:1632545/149‑1 (MQ=255) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAACGGGGCGAggg < 2:1797582/149‑1 (MQ=255) cGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCAAAACCGCAC‑CCCAAATGGGCGAGGGGAcc > 2:1946099/1‑149 (MQ=39) cATTACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCTCACCCAAAACCAAAA‑CCCAAACGGGCGTGGGGACCgg > 2:4160526/1‑148 (MQ=37) cATTACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCAGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCACACCCAAACCCACTC‑CCCCAACGGGCGAGGGGAccct > 2:1826458/1‑147 (MQ=38) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCCCCCCCCAAACCAAAAC‑CCCAAAGGGGGGGGGGGCCCg > 1:3877820/1‑149 (MQ=37) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCAACCTAACCCACTC‑CCCCAAGGGGCGAGGGGACCggt > 2:2920497/1‑147 (MQ=255) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCCCCCCCTAAACCACAC‑CCCCAAGGGGCGCGGGGACCggt > 2:2910242/1‑147 (MQ=38) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCCAACCCAAAACCACAC‑CCCCAAGGGGCGAGGGGGCCggt > 2:2119061/1‑147 (MQ=38) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCACACCCCAACCCAAAA‑CCCAAAAGGGCGAGGGGGcccggc > 2:2954636/1‑145 (MQ=37) cACCTTAACTATTGATAATAAAAGACTTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCTCACCCGAACCCGCTC‑CCCAAAGGGGCGAGGGGTCCGTTCa > 2:2338839/1‑149 (MQ=39) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCa < 1:2336381/149‑1 (MQ=255) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTa < 2:4491583/149‑1 (MQ=255) cTATTGATAATAAAAGACATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGaa < 2:4329938/149‑1 (MQ=255) cTAGTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGaa < 1:2608170/149‑1 (MQ=255) tcttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 2:1300326/147‑1 (MQ=255) tATTGATAATAAAAGACATTACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 1:1164178/149‑1 (MQ=255) tATTGATAATAAAAGACATTACCCGGAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAACGGGGCGAGGGGACCGTTCAGTACGGAAt < 2:1300261/149‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAttt < 2:779807/149‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCACACCCAAACCCTAAA‑CCCCAATGGGCGAGGGGGCCCGTGAGTAAGGAAttt > 2:2534500/1‑149 (MQ=37) tGATATTAAAAGACATTAACCGTAGTCCGGATAAGATGCGCCAGCATCGCTTCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCACACCCTAACCCACAG‑ACCAAACGGGGCAGGGGACCGTTAAGTACGGAAGTTa > 2:373223/1‑149 (MQ=255) ataataAAAGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTACCCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGc < 2:7878/149‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt < 2:2719540/149‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt < 2:1349817/149‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑TCCCGCCCCCCAACCCACACACCCAAAGGGG‑GCGGGGTCCCGTCACTACGGAATATTGCttt > 2:1229669/1‑148 (MQ=25) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGa < 2:3126797/149‑1 (MQ=255) aaaaGACCTGACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:760528/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCCCACCCAAACCCACAA‑ACCCACGGGGCGAGGGGGCCCGTCAGTAAGGAAATTAGCTTGAc > 2:3236828/1‑149 (MQ=25) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:300241/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:2179270/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:2179275/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCAAACCCTAAACCACAA‑CCCAAAGGGGCGAGGGGACCGGTCAGTACGGAATTTAGCATggc > 2:2180986/1‑147 (MQ=38) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGATGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCACCGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:300829/149‑1 (MQ=255) aaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACg < 2:1961274/149‑1 (MQ=255) aaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACgg < 2:3754189/149‑1 (MQ=255) aGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCACACCCAAACCCACAA‑CCCAAAAGGGCGAGGGGCCCCCTCAGGACGGAAATTAGCTTTAAGGt > 2:638361/1‑149 (MQ=25) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTAACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGt < 1:4096177/149‑1 (MQ=255) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑TCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg > 2:1259632/1‑149 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCt < 2:1278230/149‑1 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCt < 2:3614831/149‑1 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCACCACCAAAACCACAA‑CCCCAAGGGGCGTGGGGACCGTTCAGTACGGTAATTATCATGACGGTGcga > 2:2648598/1‑147 (MQ=25) tAACCGTAGGCCGGATAAGATGCGCCAGCTTCGCATCCGTCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATc < 1:2893949/149‑1 (MQ=255) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCACACCCAAAACCAAAA‑CCCCAAAGGGCGACGGGGCCGATCACTACGGAATATTGCGATACCGTGCTAta > 2:1627489/1‑148 (MQ=19) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATc < 1:3252052/149‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑TCCCTCACCCAAACCCACTA‑CCCAAAAGGGCGGGGGGACCGTTCAGTAACGAAATTAGCTTGTCAGTGCTATcc > 2:486596/1‑149 (MQ=37) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCACACCCAAAACCAATA‑CCCAAAAGGGCGAGGGGGCCGGTCCGTACGGAAATTATCATTAAGGGGCTATcc > 2:3811205/1‑149 (MQ=25) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCACACCCAAACCCACAA‑CCCCAACGGGCGCGGGGACCGTTAAGTACCGAAAGTTGCGTGACCGTGcgctcc > 2:3810134/1‑144 (MQ=21) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:1946099/149‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATAc < 2:1134601/149‑1 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACt < 1:2369589/149‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTg < 1:922937/149‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAAGTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTg < 2:117998/149‑1 (MQ=255) aaGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTgg < 2:1449339/149‑1 (MQ=255) aaGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTgg < 2:3416729/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 2:2978552/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 2:2978579/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 2:143888/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 1:4451690/149‑1 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAAt < 1:4449896/149‑1 (MQ=255) cgcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATAc < 1:1838272/149‑1 (MQ=255) cAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATActct < 1:817934/149‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCAAACCCTCAA‑CCCCAAAGGGCGAGGGGACCCGTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAATAAAAAAAGGCAATACTcaca > 2:4249954/1‑149 (MQ=255) catcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCAc < 1:775339/149‑1 (MQ=255) cgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCa < 1:1431905/149‑1 (MQ=255) atcCGGCGATGCTGGCGAGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCaaaa < 2:2584937/149‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgca < 1:3957911/149‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgca < 1:1643722/149‑1 (MQ=255) tGGCGCGTTGAATGTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCg < 2:4191407/149‑1 (MQ=255) ggCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGt < 1:638361/149‑1 (MQ=255) gTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCtt < 1:2681617/149‑1 (MQ=255) tttACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCt < 1:4238732/149‑1 (MQ=255) agcccGTACGGG‑CCCCTCACCCACACCCTCTC‑CCCCCAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAt < 2:3672908/147‑1 (MQ=255) tCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 1:1288701/149‑1 (MQ=255) tCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAtt < 1:3625076/149‑1 (MQ=255) cccGTACGTG‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTc < 1:1729183/149‑1 (MQ=255) tACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGGTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAAAACTGGCAATACTCTCACGCAAAAACCGCAGCACCGTCTCATCACCGCTGCGATTCGGGt > 2:1875655/1‑149 (MQ=255) aCGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGCGGGGACCGTTCAGTACGGAAATTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATACGCAGCACCGTCTCTTCCCCGCGGCGCTTCGGGtt > 2:4010965/1‑149 (MQ=38) aCGGT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGtt < 2:1795695/149‑1 (MQ=255) gTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTaa < 2:4579729/149‑1 (MQ=255) gTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCATCTCTTCACCGCTGCGATTCGGGTTaa < 1:1903109/149‑1 (MQ=255) tt‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTATCTTGACGGTGCTATACAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 1:2534500/149‑1 (MQ=255) tt‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 1:194080/149‑1 (MQ=255) tt‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt > 2:1614517/1‑149 (MQ=255) | ACAAACCGGTGCACGTCTCCGAACTCTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCCTAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAT > CP009273/3498066‑3498362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |