| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,239 | A→C | 7.1% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,239 | 0 | A | C | 7.1% | 481.0 / 5.2 | 176 | intergenic (+97/+55) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base A (57/102); new base C (15/2); total (72/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.51e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 182 total aligned reads displayed.
CTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGT > CP009273/3498094‑3498387 | ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAg < 1:3779416/149‑1 (MQ=255) gCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAggg < 2:2288296/149‑1 (MQ=255) ccAATCGCATCACCTTAACTATTGATAATAAAAGACATTCACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAgg < 1:2806198/149‑1 (MQ=255) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAACGGGGCGAggg < 2:1797582/149‑1 (MQ=255) cGCATCACCTTACCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAACGGGGCGAGGGGAcc < 2:1761214/149‑1 (MQ=255) cATTACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCTCACCC‑AAAACCAAAA‑CCCAAACGGGCGTGGGGACCgg > 2:4160526/1‑148 (MQ=37) cATTACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCAGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCACACCC‑AAACCCACTC‑CCCCAACGGGCGAGGGGAccct > 2:1826458/1‑147 (MQ=38) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCCCCCCCC‑AAACCAAAAC‑CCCAAAGGGGGGGGGGGCCCg > 1:3877820/1‑149 (MQ=37) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGt < 1:2560639/149‑1 (MQ=255) cATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGGTGAATTTTACATCCCGTACGTT‑GGCCCCACCC‑CAAACCACAA‑CCCAAAAGGGCGAGGGGGCCgg > 1:682356/1‑148 (MQ=37) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCCCCCCC‑TAAACCACAC‑CCCCAAGGGGCGCGGGGACCggt > 2:2910242/1‑147 (MQ=38) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCCAACCC‑AAAACCACAC‑CCCCAAGGGGCGAGGGGGCCggt > 2:2119061/1‑147 (MQ=38) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCGCCCCC‑AAACCCACAC‑CCCCAACGGGCGCGGGGAcccgtc > 2:2954626/1‑145 (MQ=38) tCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCACACCC‑CAACCCACAC‑CCCAAAGGGGCGAGGGGCCCGTTc > 2:2954982/1‑149 (MQ=39) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCa < 1:2336381/149‑1 (MQ=255) cACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCACACCC‑AAACCCACTC‑CCCAAAAGGGCGAGGGGACCggtaa > 2:2338820/1‑145 (MQ=39) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTa < 2:4491583/149‑1 (MQ=255) cTATTGATAATAAAAGACATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGaa < 2:4329938/149‑1 (MQ=255) tcttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 2:1300326/147‑1 (MQ=255) tATTGATAATAAAAGACATTACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 1:1164178/149‑1 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAt < 2:1300243/149‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAttt < 2:779807/149‑1 (MQ=255) ttGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCGCCCCC‑GAACCCTCTC‑CCCCAAGGGGCGAGGGGCCCCTTCAGTACCGacatt > 2:194080/1‑145 (MQ=38) tGATATTAAAAGACATTAACCGTAGTCCGGATAAGATGCGCCAGCATCGCTTCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑ACCCACACCC‑TAACCCACAG‑ACCAAACGGGGCAGGGGACCGTTAAGTACGGAAGTTa > 2:373223/1‑149 (MQ=255) ataataAAAGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TACCCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGc < 2:7878/149‑1 (MQ=255) ataataAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATACCGTACGTT‑GCCCGCACCCAAAACCAAAAC‑CCCAAAGGGGGGGGGGGCCGGTACGGAACGAAAttaga > 1:4508027/1‑146 (MQ=21) aataaCAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt < 2:2719538/149‑1 (MQ=255) aataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCtt < 2:2719540/149‑1 (MQ=255) ataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑TCCCGCCCCC‑CAACCCACACACCCAAAGGGG‑GCGGGGTCCCGTCACTACGGAATATTGCttt > 2:1229669/1‑148 (MQ=25) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGa < 2:3126797/149‑1 (MQ=255) aaaaGACCTGACCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:760528/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCCCACCC‑AAACCCACAA‑ACCCACGGGGCGAGGGGGCCCGTCAGTAAGGAAATTAGCTTGAc > 2:3236828/1‑149 (MQ=25) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:300241/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:2179270/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:2179514/149‑1 (MQ=255) aaaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGATGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCACCGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGAc < 2:300829/149‑1 (MQ=255) aaaGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACg < 2:1961274/149‑1 (MQ=255) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTAACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGt < 1:4096177/149‑1 (MQ=255) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑TCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg > 2:1259632/1‑149 (MQ=255) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTg < 2:3407227/149‑1 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCt < 2:1278185/149‑1 (MQ=255) cATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCt < 2:3614831/149‑1 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTa < 2:1409093/149‑1 (MQ=255) aTTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑AAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCCGTACCGAAATTAGCTTGACGGTGCTa > 2:3892554/1‑149 (MQ=255) ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGGTGAATTTTACATCCCGTACGGT‑CCCCGCACCC‑AAACCCACTC‑CCCCAAGGGGCGAGGGGCCCGTTCAGTACGGCAAGTAGCTTGACCGTGCAAt > 2:1948937/1‑149 (MQ=37) tAACCGTAGGCCGGATAAGATGCGCCAGCTTCGCATCCGTCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATc < 1:2893949/149‑1 (MQ=255) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑GCCCACACCC‑AAAACCAAAA‑CCCCAAAGGGCGACGGGGCCGATCACTACGGAATATTGCGATACCGTGCTAta > 2:1627489/1‑148 (MQ=19) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATc < 1:3252052/149‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGT‑CCCCACACCC‑AAACCCACAA‑CCCCAACGGGCGCGGGGACCGTTAAGTACCGAAAGTTGCGTGACCGTGcgctcc > 2:3810134/1‑144 (MQ=21) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAt < 1:1946099/149‑1 (MQ=255) aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAtt < 1:1943302/149‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATAc < 2:1134601/149‑1 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACt < 1:2369589/149‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTg < 2:118028/149‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTg < 1:922937/149‑1 (MQ=255) aaGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTgg < 2:1449339/149‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGc < 2:2978579/149‑1 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAAt < 1:4449896/149‑1 (MQ=255) cAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATActct < 1:817934/149‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCa < 2:1542779/149‑1 (MQ=255) gcatcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑AAACCCTCAA‑CCCCAAAGGGCGAGGGGACCCGTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCAATAAAAAAAGGCAATACTcaca > 2:4249954/1‑149 (MQ=255) cgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCa < 1:1431905/149‑1 (MQ=255) atcCGGCGATGCTGGCGAGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCaaaa < 2:2584937/149‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgca < 1:1643660/149‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgca < 1:1643722/149‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgca < 1:3957911/149‑1 (MQ=255) tGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCg < 2:4191516/149‑1 (MQ=255) ggCGCGTTGAATTTTACATCCCGTACGGT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGt < 1:638361/149‑1 (MQ=255) cgcgTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGtct < 2:2234820/149‑1 (MQ=255) gAATTTTACATCCCGTACGGT‑CCCCTCACCC‑TACCCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCAc < 2:180266/149‑1 (MQ=255) tttACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCt < 1:4238732/149‑1 (MQ=255) agcccGTACGGG‑CCCCTCACCC‑ACACCCTCTC‑CCCCCAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAt < 2:3672908/147‑1 (MQ=255) cccGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTc < 1:2920497/149‑1 (MQ=255) tACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGGTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAAAACTGGCAATACTCTCACGCAAAAACCGCAGCACCGTCTCATCACCGCTGCGATTCGGGt > 2:1875655/1‑149 (MQ=255) aCGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGCGGGGACCGTTCAGTACGGAAATTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATACGCAGCACCGTCTCTTCCCCGCGGCGCTTCGGGtt > 2:4010965/1‑149 (MQ=38) gTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCATCTCTTCACCGCTGCGATTCGGGTTaa < 1:1903109/149‑1 (MQ=255) tt‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTATCTTGACGGTGCTATACAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAAt < 1:2534500/149‑1 (MQ=255) tt‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGGTAAt > 2:2514706/1‑149 (MQ=255) ccccTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGc < 1:3642702/149‑1 (MQ=255) ccccTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGc > 2:875925/1‑149 (MQ=255) ccccTCACCC‑TAAACCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGc > 2:904168/1‑149 (MQ=255) tCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt > 1:1203944/1‑149 (MQ=255) cACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATc < 1:1294376/149‑1 (MQ=255) ccc‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATTCGAATCGc > 2:2575218/1‑149 (MQ=255) ccc‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGc > 1:1809496/1‑149 (MQ=255) cc‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGca < 2:4156364/149‑1 (MQ=255) cc‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGca > 1:2662432/1‑149 (MQ=255) tAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcaca > 2:346225/1‑149 (MQ=255) tAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcaca > 1:1615794/1‑149 (MQ=255) tAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcaca > 1:276366/1‑149 (MQ=255) tAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcaca > 2:1379646/1‑149 (MQ=255) tAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGGTAATGCGAATCGcaca > 2:346259/1‑149 (MQ=255) aCCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcacact > 2:744125/1‑147 (MQ=255) ctctC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt > 2:4587850/1‑149 (MQ=255) tctc‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTc > 1:2071551/1‑149 (MQ=255) ctc‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCt > 2:611123/1‑149 (MQ=255) c‑cccAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATg > 1:1825027/1‑143 (MQ=255) aaaGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtgt > 2:4630957/1‑149 (MQ=255) aaaGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtgt > 1:2630638/1‑149 (MQ=255) aaaGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtgt > 1:172395/1‑149 (MQ=255) | CTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTT‑CCCCTCACCC‑TAACCCTCTC‑CCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGCTTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGT > CP009273/3498094‑3498387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |