| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,530,481 | G→T | 14.4% | R104L (CGT→CTT) | greB → | transcript cleavage factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,530,481 | 0 | G | T | 14.4% | 728.2 / 76.3 | 220 | R104L (CGT→CTT) | greB | transcript cleavage factor |
| Reads supporting (aligned to +/- strand): ref base G (84/104); new base T (17/15); total (101/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 222 total aligned reads displayed.
GCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATC > CP009273/3530335‑3530629 | gggTGAAATCGACCGTCGCGGGCGATATCTCACTAAAGGCCTGTAAAATCTCAAAATCGTCGATTACTCCCCTCAGCTGGACGGCAAATTC‑TTTTTTGGCGCGTGGGTGGTGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTa < 1:3029767/147‑1 (MQ=255)gCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTa > 2:2618951/1‑149 (MQ=255) cGTGAAATCGCCCGTCGCGTGCGCTATCACAATAAATGCCTGTAAAATATAAAAATCGTCTATTACGCCCCTCAGCAGGAAGGAAAAGTA‑TTTTTGGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTAt < 2:4208483/149‑1 (MQ=255) aaaTCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTc > 1:4212413/1‑149 (MQ=255) aaaTCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAAGCGTCGATTACTCCCCGCAGCCGGACGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGTGTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTc < 2:4386253/149‑1 (MQ=255) aaaTCGACCGTCGCGTGCGATATCTCACTATATGCCTGTAAAATCTCAAAATCGTCGATTACTCCCCTCCGCTGTATGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTc < 2:2045622/149‑1 (MQ=255) aCCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTAc > 1:664714/1‑149 (MQ=255) aCCGTCGCGTGCGATATCACACTAAATGCCTGGAAAATCTAAAAATCGTCGATTACGCCCCTCCGCAGGAAGGAAAAGTA‑TTTTTTGGCGCGTGGGTGGATTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTAc < 1:386284/149‑1 (MQ=255) cggcgcgGGCGCTAGCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCCGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGa < 2:3805652/146‑1 (MQ=255) cgcgTGCGCTATCTCACTAAATGCCTGTAAATTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGGGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGa < 2:3091095/149‑1 (MQ=255) gTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAt > 2:2453544/1‑149 (MQ=255) gTGCGCTATATCACTAAATCCCTGTAAAATATCAAAATCGTCGATTACTCCCCTCAGCTGGAAGGAAAAGTC‑TTTTTTGGCGGGTGGGTGTATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAt < 2:3652166/149‑1 (MQ=255) tgctatATCTCACTAACTGCCGGCAAAATCTCAAAATCGTCGATTACTCCCCACAGCAGGAAGGAAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAtt < 2:4501772/144‑1 (MQ=255) gcgcTATCTCACTAACGGCCTGTAAAATCTCAAAATCGGCGATTACGCCCCACAGCCGGAAGGAAAAGTC‑TTTTTGGGCGCGGGGGTGGTGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAAttt < 2:4381009/149‑1 (MQ=255) cTATCTCACTAATTGCCTGTAAAATCTCAAAATCGTCTATTACTCCCCTCAGCAGGAAGGCAAAGTA‑TTTTTTGGCGGGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTg < 1:3031554/149‑1 (MQ=255) tATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTgg < 2:3420484/149‑1 (MQ=255) tATCCCACTAAAGGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCTGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTgg < 1:4242256/149‑1 (MQ=255) atcaaaCTAAATGCCTGTAAAATAGCAAAATCTTCGATTACTCCCCTCAGCAGTAAGGAAATTTA‑TTTTTTGGGGGGTGGTGGTATTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGc < 1:4408434/144‑1 (MQ=255) tctcACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGcc > 1:2628546/1‑149 (MQ=255) tctcACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGcc > 1:2561806/1‑149 (MQ=255) tcACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGt > 1:3739533/1‑149 (MQ=255) cTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCTGGAAGGCAAAGTT‑TTTTTTGGCGGGTGGGTGTATTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTaaa < 1:929732/149‑1 (MQ=255) cTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTaaa > 1:2410007/1‑149 (MQ=255) cTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTaaa > 1:3970138/1‑149 (MQ=255) attGCCTTTAAAATCACAAAATCGTCTATTACTCCCCTCCGCTGGAAGTCAATGTG‑TTTTTGGGCGGGTGGGTGTAGATTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGAt < 1:2816142/147‑1 (MQ=255) gCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTAc > 2:2423079/1‑149 (MQ=255) cctttaaaaTATAAAAAGCGTCTATTACTCCCCACACCAGTATGTAAAAGTT‑TTTTTTGGCGGGTGGGTGGATTTTCAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACa < 1:967344/144‑1 (MQ=255) cTGCAAAATATCAAAATCGTCTATTACTCCCCTCCGCAGTATGGAAAAGTA‑TTTTTTGGCGGGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAt < 1:1100680/149‑1 (MQ=255) ttaaaaaTCAAAAAATCGTATATTACTCCCCTCCGCAGGAAGTAAATTTA‑TTTTTTGGGGGGTGGGTGTATATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtc < 1:1658449/146‑1 (MQ=255) gcaaaaCCCCAAACTCGTCGATTACCCCCCCCCCCAGGAAGTCAAAGTC‑TTTTTTGGCGGGGGGGGGTTGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtct < 1:3838920/147‑1 (MQ=255) gAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACAtctc > 2:1370442/1‑149 (MQ=255) aaTCTAAAAATCGTCTATTACGCCCCGCCGCCGGAAGGAAAAGTC‑TTTTTTGGCGGGTGGGTGGATTTTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTAt < 1:4128313/149‑1 (MQ=255) aTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAACGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATc < 2:1150117/149‑1 (MQ=255) aTCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATc > 1:1428060/1‑149 (MQ=255) ctcAAAATCGTCGATTACTCCCCTCCGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGTTTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGa < 2:1017949/149‑1 (MQ=255) aaaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTc > 1:3741602/1‑149 (MQ=255) aaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc > 2:1902951/1‑149 (MQ=255) aaaTCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTcc > 2:453550/1‑149 (MQ=255) tcgtcgATTACTCCCCACAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTTAAAACGACGATTGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTTGCCGTAAAGATTACATCTCTATCGATTACCCg > 1:3476905/1‑149 (MQ=255) tcgtcgATTACTCCCCACAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTTAAAACGACCATGGCGTGAATCACCGTTTCCTTATTGTCGGCTACCATGAAATTTTTTGCCGTAAAGATTACATCTAAATCCATTacccc > 1:4081275/1‑148 (MQ=255) tcgATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATg > 1:4132721/1‑149 (MQ=255) tcgATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATg > 1:1743983/1‑149 (MQ=255) aTTACTCCCCTCAGCTGTAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGcc < 1:254265/149‑1 (MQ=255) aTTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGcc > 2:304879/1‑149 (MQ=255) aTTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGcc > 2:1704535/1‑149 (MQ=255) ttACTCCCCTCCGCAGGAAGGCAACTTC‑TTTTTGGGCGCGTGGGTGGATATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGccc < 2:4266933/149‑1 (MQ=255) ttACGCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGGGTGGGGGGATATTGAACACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGccc < 2:209136/149‑1 (MQ=255) ccTCCCCTCCGCCGGAAGGCAAGGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCcgc < 2:2286301/148‑1 (MQ=255) cTCCCCGCAGCAGGAAGGCAAAGTCTTTTTTTGGCGCGTGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCcgc < 2:1873353/149‑1 (MQ=255) cTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTg > 1:4605457/1‑149 (MQ=255) tCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGc < 2:781371/149‑1 (MQ=255) gcagGAAGGCAACTTC‑TTTTTTGGGGCGTGGGTGGTGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGa < 2:3939200/149‑1 (MQ=255) gcagGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGa > 1:4518037/1‑149 (MQ=255) tggATGGAAAAGTA‑TTTTTTGGCGCGTGGGTGGATATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaa < 1:3510191/148‑1 (MQ=255) agGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaa > 2:658299/1‑149 (MQ=255) ggAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaa > 1:2267033/1‑149 (MQ=255) ggAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGaaaa > 2:1509412/1‑149 (MQ=255) aaGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATAGATTCCCCGATGGCCCGCGCATTGCTGaaaaaa > 2:2908607/1‑149 (MQ=255) cAAAGTA‑TTTTTGGGCGCGTGGGTGGAGATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAaagaag < 1:1050815/149‑1 (MQ=255) aatgTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGt < 2:2716567/146‑1 (MQ=255) aacgTC‑TTTTTTGGCGCGTGGGTGTATATTGAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGt < 1:1915851/146‑1 (MQ=255) aaaGTC‑TTTTTGGGCGGGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGt < 2:1052074/149‑1 (MQ=255) ttgTC‑TTTTTTGGCGCGTGGTTTGTGATTTAACAAGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAATTTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTc < 1:3359721/147‑1 (MQ=255) aaGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACTATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTc > 2:3243510/1‑149 (MQ=255) gTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCgg > 1:3078911/1‑149 (MQ=255) tC‑TTTTTTGGCGCGTGGGTGTATATTTAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGc < 1:1555831/149‑1 (MQ=255) c‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCg > 2:1730837/1‑149 (MQ=255) ttttttGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGa > 1:321275/1‑149 (MQ=255) ttttGGGGGGTGGGTGTATTTTTAACACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATGCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATc < 1:1269606/149‑1 (MQ=255) ggggtgggtggAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCgg < 1:829166/146‑1 (MQ=255) gcgTGGGTGGATATTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCggt < 1:2311474/149‑1 (MQ=255) gagaTTGAAAACGACGATGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATAc > 2:3928764/1‑149 (MQ=255) ttGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCt > 1:1261904/1‑149 (MQ=255) ttGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCt < 2:3970138/149‑1 (MQ=255) gAACACGACGATGGCGTGACTCACCGTGTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGc < 2:55597/149‑1 (MQ=255) aaaCGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCg > 2:1561248/1‑149 (MQ=255) cgacgaTGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCgggg < 1:610744/149‑1 (MQ=255) gaTGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGc > 1:1623913/1‑149 (MQ=255) tGGCGTGACTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGa > 2:3402159/1‑149 (MQ=255) gCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGc < 2:89694/149‑1 (MQ=255) aCTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTa < 1:2483417/149‑1 (MQ=255) cTCACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTAt < 2:144600/149‑1 (MQ=255) tCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATg < 1:1004853/149‑1 (MQ=255) cACCGTTTCCTTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGt < 2:313362/149‑1 (MQ=255) cACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGt > 2:16106/1‑149 (MQ=255) cACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGt < 2:2849807/149‑1 (MQ=255) cACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGt > 1:1570965/1‑149 (MQ=255) aCCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGtt > 1:744100/1‑149 (MQ=255) aCCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGtt > 1:1451566/1‑149 (MQ=255) ccGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTa > 1:2268711/1‑149 (MQ=255) ccGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTa > 1:2864946/1‑149 (MQ=255) cGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTaa < 1:272897/149‑1 (MQ=255) ttCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGc > 2:1235168/1‑149 (MQ=255) ccGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTa < 2:2147052/149‑1 (MQ=255) cGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTAt < 1:1709954/149‑1 (MQ=255) cGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTAt > 2:1621273/1‑149 (MQ=255) cGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTAt < 1:1811139/149‑1 (MQ=255) cGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTAt > 2:3032722/1‑149 (MQ=255) cGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGAGTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTAt < 2:3088993/149‑1 (MQ=255) gTATTGTCGGCTACGATGAAATTTTGGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATc < 2:3516548/149‑1 (MQ=255) | GCGTGAAATCGACCGTCGCGTGCGCTATCTCACTAAATGCCTGGAAAATCTCAAAATCGTCGATTACTCCCCTCAGCAGGAAGGCAAAGTC‑TTTTTTGGCGCGTGGGTGGAGATTGAAAACGACGATGGCGTGACTCACCGTTTCCGTATTGTCGGCTACGATGAAATTTTTGGCCGTAAAGATTACATCTCTATCGATTCCCCGATGGCCCGCGCATTGCTGAAAAAAGAAGTCGGCGATCTGGCGGTGGTGAATACCCCTGCCGGGGAAGCGAGCTGGTATGTTAATGCTATC > CP009273/3530335‑3530629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |