| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,633,969 | T→G | 11.0% | intergenic (+64/‑253) | uspA → / → dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,633,969 | 0 | T | G | 11.0% | 656.2 / 6.0 | 266 | intergenic (+64/‑253) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
| Reads supporting (aligned to +/- strand): ref base T (62/155); new base G (35/2); total (109/157) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.43e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 272 total aligned reads displayed.
CAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCT > CP009273/3633821‑3634117 | cAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCt < 2:3759386/149‑1 (MQ=255)cAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCt < 2:1422817/149‑1 (MQ=255) aCTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGGTTTTTGTGGCGCCTGGt > 1:4429851/1‑149 (MQ=255) cTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGtt < 1:1039347/149‑1 (MQ=255) gATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTAc < 2:3113334/149‑1 (MQ=255) aTGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCTTTTTGGCGCGCCTTGTTAcc > 2:369066/1‑149 (MQ=255) cTTCCGCACGTCAGCTGATCAACACCGTTTACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGGTTTTTGGCGCGCCGTGGTACCAGAt > 1:1026179/1‑149 (MQ=255) aCGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCTTTTTGGCGCGCCTTGTTACCTGATAAGCGTa > 1:732968/1‑149 (MQ=255) cGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCTTTTTGGCGCGCCGTGTTACCTGCTCAGCGTaa > 2:3202826/1‑149 (MQ=255) gTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTaaa < 1:1864622/149‑1 (MQ=255) tCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCTTTTTGGCGCGCCGTGTTTCCATATCAGCGTAAac > 1:1694242/1‑149 (MQ=255) cAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGGGTTTTTGGGCGCCGTGGTAACAGGTCAGCGTAAaca > 1:3188672/1‑149 (MQ=255) aGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAacac < 2:968824/149‑1 (MQ=255) aGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAacac > 2:1656726/1‑149 (MQ=255) gCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACAcc > 2:2513907/1‑149 (MQ=255) gCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACAcc > 2:2956905/1‑149 (MQ=255) tGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCtt < 2:1871257/149‑1 (MQ=255) tGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCGTGTTGGCGCGCCTTGTTACCAGATCAGCGTAAACACCta > 2:3323661/1‑148 (MQ=255) gATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTa < 2:181139/149‑1 (MQ=255) aTCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTAt < 2:2791981/149‑1 (MQ=255) cAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCt < 1:1664226/149‑1 (MQ=255) acacCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTgg > 2:2700564/1‑149 (MQ=255) cacCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGc < 1:1608341/149‑1 (MQ=255) cacCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCGTGTTACCAGATCAGCGTAAACACCTTATCTGGc > 2:1747669/1‑149 (MQ=255) acCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCGTGTTACCTGATCAGCCTAAACACCTTATCTGGcc > 1:2653509/1‑149 (MQ=255) gTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTAc < 2:63488/149‑1 (MQ=255) tCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTGTTGGCGCGCCGTGTTACCTGATCAGCGTAAACACCTTATCTGGCCAACgg > 2:4210902/1‑149 (MQ=255) aCGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTc < 2:3266265/149‑1 (MQ=255) ttGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGc < 2:4370329/149‑1 (MQ=255) gATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCGTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAAAAACTTATCTGGCCTACGGTATGCGt > 2:3484267/1‑149 (MQ=255) atatGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCGTGTTACCTGATCAGCGTAAAAACCTTATATGGCCTACGGTCTTCGTa > 2:273312/1‑149 (MQ=255) tGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAAt < 2:442892/149‑1 (MQ=255) aTTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCATGTTACCAGATCAGCGTAAACACCGTATCTGGCCTACGGTCTGCGTACGCAATCa > 2:2938532/1‑149 (MQ=255) gTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCaaaa < 1:3646465/149‑1 (MQ=255) gTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCaaaa < 1:3101099/149‑1 (MQ=255) cGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATccc < 1:3942386/149‑1 (MQ=255) gacgaAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAAt < 1:4598353/149‑1 (MQ=255) acgaAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTTGCGCGCCATGTTAACAGATCATCCTAAAAAACATATATTGCCAACGGTCTTCGTAAGCAATAAAAATACCCAGCCaaaa > 1:279504/1‑147 (MQ=255) cgaAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGTCAATac < 1:2690601/149‑1 (MQ=255) cgaAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATac < 1:671846/149‑1 (MQ=255) aagaagaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATacaa < 2:91035/149‑1 (MQ=255) aagaagaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATacaa < 2:3970519/149‑1 (MQ=255) agaagaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATacaac < 1:1366552/149‑1 (MQ=255) agaagaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCGTGTTACCAGATCAGCCTAAACACCATAACTGGCCAAAGGTCTGCGGACGCCAACAAAAAACCCACCCAAAaaaac > 1:4233951/1‑149 (MQ=255) gaagaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCTTTTTTGCGCGCCGTGTTAACATATCAGCGTAAACACCAAATATGGCCTACGGTCTGCGTAAGCAAACAAAAAACCCAACCAAAaaaaca > 1:3470424/1‑149 (MQ=255) aagaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACAt < 2:1530873/149‑1 (MQ=255) aagaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACAt < 2:1661989/149‑1 (MQ=255) agaaTACTCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACAtt < 2:582297/149‑1 (MQ=255) agaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTTGCGCGCCTTGTTACCTGGTCAGCGTAAAAACCATATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCACCCAAAACAACAta > 2:4564539/1‑148 (MQ=255) gaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCGTTTTTGGGCGCCGTGTTACCAGATCAGCGTAAAAACCATATATGGCCTAACGGCTGCGGACGCAATCAAAAAACCCACCCAAAACAAAAtat > 1:4167883/1‑147 (MQ=255) gaaTAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTGCGTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCATATCTGGCCTCCGGTCTGCGTACGCAAACCAAATACCCCCCCAAAACAACCttt > 2:3608771/1‑149 (MQ=255) attCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTTGTTGTGTTTTGG‑GGGCCGTGTTACCTGGTAAGAGTAAACACCATATATGGGCTACGGGCTTCGTACGCAATCAAAATACCCAGCCAATACAAAATTTAaca > 1:775928/3‑149 (MQ=255) tCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACAcc < 2:1223410/149‑1 (MQ=255) cTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGTGCGCCTTGTTACCAGATCAGCGTAAACACCTTAACTGGCCTAACGTCTGCGTAAGCAATCAAAAAACCCAGCCAAAACAAAAATTAAAACca > 2:4119202/1‑149 (MQ=255) cTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTG‑TTTGTTTTTTGCGCGCCGTGTTACCAGATCAGCGTAAAAAACGTATATGGCCGACGGTCTTCGGAAGCAATCAAAAAACCCACCCAAAACAAAAATTAAAACca > 1:984672/1‑149 (MQ=255) tCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCGGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACcatc < 2:197536/149‑1 (MQ=255) cccTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACcatca < 1:1733025/149‑1 (MQ=255) cccTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACcatca < 1:1733336/149‑1 (MQ=255) tctACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCatat < 2:1610249/149‑1 (MQ=255) tctACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCatat < 1:2405826/149‑1 (MQ=255) ctACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATAtt < 1:1269295/149‑1 (MQ=255) tACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGGTTTTTTGCGCGGCTTGTTTACAGATCAGCCTAAAAACCGTATATGGCCAACGGTCTGCGTACGCAAAAAAAAAACCCAGCCAAAACAAAAATTAAAACCATCAAAttt > 1:1465177/1‑149 (MQ=255) acgacgTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATAtttt < 1:4277792/149‑1 (MQ=255) acgacgTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTAACTGATCAGCGTAAAAACCTTATATGGCCTACGGTCTGCGTAAGCAAACAAAATCCCCAGCCAAAACAACATTTAACAACATCATAtttt > 2:1007474/1‑149 (MQ=255) cgacgTGTTCGTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGCTCAGCGTAAACACCGTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTc < 1:4288234/149‑1 (MQ=255) atgtTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCcatc < 2:1784964/148‑1 (MQ=255) gtTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAAAACCTTATCAGGCCTACGGTCTGCGTACGCAATCAAAATACCCAGCCAATAAAACAATTAACAACATCATATTTTCcataat > 2:2252791/1‑149 (MQ=255) tacttaaCGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGATTAAACACCTTATCTGGCCTACTGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTa < 1:3522437/144‑1 (MQ=255) gAACGCCCGCATATGCGGGCGTT‑TTGCTTTTCGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAgtgt < 2:1583659/149‑1 (MQ=255) gAACGCCCGCATATGCGGGCGTG‑TTTGTTTTTGGCGCGGCGTGTTAACTGATCAGCGGAAACACCATATCTGGCCGACGGGCTGCGTACGCAAGCAAAATCCCCCGCCCATACAACATTTAAAACCATCAAATTTTCAAACATTAgtgt > 2:4040373/1‑149 (MQ=255) gCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGatc < 2:3188672/149‑1 (MQ=255) cccTCATAGGCGGGAGTT‑TTTCTTTTTGGCGCGCCTTGTTACATGATCAGCGTAAACACCTTTTCTGGCCTCCGGTCTGCGTACTCAATCAACATCCACAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGatca < 2:2409094/149‑1 (MQ=255) cccGCATATGCGGGCGTT‑TTGGTTTTTTGCGCCCCGTGTTAACTGATAACCGTAAACACCATATATGGCCTAAGGTGTGCGTTAGCAAACAAAATACCCAGCCAAAACAACAATTAAAACCAACAAATTTTCACTAAATAGTGTGatca > 2:2013296/1‑149 (MQ=255) cccGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGatca < 2:67367/149‑1 (MQ=255) ccGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGatcat < 1:1718629/149‑1 (MQ=255) atGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGtt < 1:2244727/149‑1 (MQ=255) tGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTa < 1:2930048/149‑1 (MQ=255) tGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTa < 2:2637658/149‑1 (MQ=255) gCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTCTCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAt < 2:35557/149‑1 (MQ=255) gCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAATATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAt < 2:2330774/149‑1 (MQ=255) cGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtt < 1:4659453/149‑1 (MQ=255) gggCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTCTCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAttt < 2:3924661/149‑1 (MQ=255) ggCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTAtttt < 2:1758365/149‑1 (MQ=255) gCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTc < 2:791778/149‑1 (MQ=255) gCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTc < 1:3823269/149‑1 (MQ=255) tt‑ttGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgt < 2:70927/149‑1 (MQ=255) tt‑ttGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgt < 1:3882415/149‑1 (MQ=255) tGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTCTCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgttgt < 2:3445287/149‑1 (MQ=255) tGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCtgttgt < 2:3152132/149‑1 (MQ=255) cTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTaa < 1:2087703/149‑1 (MQ=255) cTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTaa > 2:768154/1‑149 (MQ=255) tttttGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAAt < 2:3456182/149‑1 (MQ=255) ttttGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATa < 1:516772/149‑1 (MQ=255) ggCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAgtgt > 2:1030939/1‑149 (MQ=255) ggCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAgtgt < 1:1311656/149‑1 (MQ=255) gcgcgcCTTGGTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCTAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATTTGGTTATTTTCTGTTGTAATAGTGTa < 2:1011717/149‑1 (MQ=255) gcgcCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATCTTTTCCATCAGTAGTGTGATCATTTGGTTATTTTCTGTTGTAATAGTGTAtt > 2:3985974/1‑149 (MQ=255) ccTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAAt > 1:2542721/1‑149 (MQ=255) cTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATc < 2:373909/149‑1 (MQ=255) ttGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCTTACGCAATCAAAATCCCCAGCCAATACAACCTTTAACACCATCATATTTTCCATCATTAGTGTGATCTTCTGGTTATTTTCTGTTGTAATAGTGTATTAATCt < 1:4125376/149‑1 (MQ=255) | CAAACTGATGTCTTCCGCACGTCAGCTGATCAACACCGTTCACGTTGATATGCTGATTGTTCCGCTGCGCGACGAAGAAGAATAATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT‑TTGCTTTTTGGCGCGCCTTGTTACCTGATCAGCGTAAACACCTTATCTGGCCTACGGTCTGCGTACGCAATCAAAATCCCCAGCCAATACAACATTTAACACCATCATATTTTCCATCATTAGTGTGATCATCTGGTTATTTTCTGTTGTAATAGTGTATTAATCT > CP009273/3633821‑3634117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |