Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,786,742 C→A 9.0% R101I (AGA→ATA)  yibB ← YibB family protein, function unknown

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,786,7420CA 9.0% 664.8 / 3.5 264R101I (AGA→ATA) yibBYibB family protein, function unknown
Reads supporting (aligned to +/- strand):  ref base C (111/114);  new base A (2/33);  total (116/148)
Fisher's exact test for biased strand distribution p-value = 2.21e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 268 total aligned reads displayed.

GCAATAGCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGGAGAAGTGAAAAT  >  CP009273/3786594‑3786890
                                                                                                                                                    |                                                                                                                                                    
  aaTAGCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTa                                                                                                                                                    <  1:3127694/149‑1 (MQ=255)
   aTAGCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTAt                                                                                                                                                   <  1:394675/149‑1 (MQ=255)
    tAGCCAAAATCTCTCCACGCACCAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACAGACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTAtt                                                                                                                                                  <  2:1422597/149‑1 (MQ=255)
    tAGCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTAtt                                                                                                                                                  <  2:4438197/149‑1 (MQ=255)
    tAGCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTAtt                                                                                                                                                  <  2:3787911/149‑1 (MQ=255)
    tAGCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTAtt                                                                                                                                                  <  1:331009/149‑1 (MQ=255)
      gCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTg                                                                                                                                                <  2:1921736/149‑1 (MQ=255)
       ccAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTAAAGTCTATTTGt                                                                                                                                               >  2:1167193/1‑149 (MQ=255)
        cAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTa                                                                                                                                              <  2:599359/149‑1 (MQ=255)
           aaTCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAAc                                                                                                                                           <  1:4133960/149‑1 (MQ=255)
               tATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTATATTTGTAAACGACt                                                                                                                                       >  1:774943/1‑149 (MQ=255)
                 tCCACGCAACAAGTGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCATTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGTTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCa                                                                                                                                     <  2:2309237/149‑1 (MQ=255)
                  ccACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTGTATTTGTAAACGACTCAt                                                                                                                                    >  2:2972044/1‑149 (MQ=255)
                    aCGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCAtat                                                                                                                                  >  1:2292084/1‑147 (MQ=255)
                     cGCAACAAGAGGGGTTTTCACTAAGCCAATGTTTATAGCTTTATTTACAAAATTGGCATTAAGTTTACATACCAAAACATACTCTGTTGACCAGTACTCTGGTTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCtt                                                                                                                                 <  2:2574019/149‑1 (MQ=255)
                      gCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCttt                                                                                                                                >  2:3902157/1‑149 (MQ=255)
                          atagagGTGTTTTCAATAAGCCATTTTTTATAGCTTTATTTACAAAATAGGCCTTATGTTTAAATACAAAAACATACTGTGGTGACCTGTAATCTGGTTTTTTTATTTTTGGAGGCTAAATTCTTTTTTTAAACGACTCATCTTTTTGa                                                                                                                            <  2:3999000/147‑1 (MQ=255)
                           aaGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTAAAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTATATTTTTAAACGACTCATCTTTTTTaa                                                                                                                           >  1:1166271/1‑149 (MQ=255)
                            agagGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCGGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAAt                                                                                                                          >  2:2708200/1‑149 (MQ=255)
                            agagGCGTTTTCACTAACCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGTTTTTTTAATTGTCGCGGCTCAAGTCTATTTGTACACGACTCATCTTTTTGAAt                                                                                                                          <  1:1817883/149‑1 (MQ=255)
                               ggCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAAtttt                                                                                                                       >  1:497349/1‑149 (MQ=255)
                                gctttttCACTAACCCCTTGTTGATAGATTTATTTAAAAAATAGGCATTATGTTTACATACAAAAAAATACTGTGGTGACCAGTACTGTGGTTTTTTTATTTGTCGAGGCTAATGTCTATTTGTAAACGACTCATCTTTTTGAAttttt                                                                                                                      <  1:2266086/146‑1 (MQ=255)
                                    tttCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGa                                                                                                                  >  2:23548/1‑149 (MQ=255)
                                       cACTACGCCCTTGTTTATTGCTTTATTTACAAAATCGGCATTATGGTTACATACAAACACATACTGTGGGGACCAGTACGCTGGGTTTTTTATTTGTCGCGGCTCACGTCTATTTGAAAACGACTCATCTTTTTGAATTTTTTCGATAc                                                                                                               <  1:351197/149‑1 (MQ=255)
                                       cACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATAc                                                                                                               >  2:4507770/1‑149 (MQ=255)
                                           aaGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACt                                                                                                           >  1:13785/1‑149 (MQ=255)
                                           aaGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAAAGACTCATCTTTTTGAATTTTTTCGATACGACt                                                                                                           >  1:2118033/1‑149 (MQ=255)
                                             gCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTc                                                                                                         >  1:1582642/1‑149 (MQ=255)
                                               cctttttGATAGCTTTATTTACAAAATAGGCATTAAGGTTACATACCAAAACATACTCTGGTGACCATTACTGTGGTTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTg                                                                                                       <  2:3017835/144‑1 (MQ=255)
                                                 aTGTTTAGAGCTTTATTTACAAAATAGGCATTACGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTATTTGTCGAGGCTCACGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGat                                                                                                     <  2:1767000/149‑1 (MQ=255)
                                                  tGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGata                                                                                                    >  1:1307445/1‑149 (MQ=255)
                                                  tGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGata                                                                                                    >  1:142945/1‑149 (MQ=255)
                                                  tGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGata                                                                                                    >  1:391767/1‑149 (MQ=255)
                                                    tttttAGATTTATTTACAAAATTGGCCTTATGGTTACATACCAAAACATACTGTGGTGACCAGTAGTGTGGTTTTTTTATTTGTCGTGGCTCATGTCTTTTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGatata                                                                                                  <  2:1205294/145‑1 (MQ=255)
                                                    ttGATAGATTTATTCACAAATTAGGCCTTATGGTAACTTACAAAACAATACTGGGGTGACATTTACTCTGGTTTTTTTAATTGTCGTGGATAAAGTATATTTTAAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGatata                                                                                                  <  1:2085949/149‑1 (MQ=255)
                                                      gATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATc                                                                                                >  1:2746898/1‑149 (MQ=255)
                                                      gATAGCTTTATTTACAAAATAGGCATTATGTTTACATACAAAAAAATACTCTGGTGACCTGTACTCGGGGTTTTTTATTTGTCGAGGCACAAGTATATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATc                                                                                                <  2:1734016/149‑1 (MQ=255)
                                                       aTAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCt                                                                                               >  2:3669087/1‑149 (MQ=255)
                                                         aGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTaa                                                                                             >  1:3139638/1‑149 (MQ=255)
                                                              tatttaAAAAATTGGCTTTATGTTTACATAACAAAAATTACGGTGGTGACCCGTCCTCTGGTTTTTTTATTGTTCGCGGCTCATGTCTTTTTGAAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTc                                                                                        <  1:3179156/149‑1 (MQ=255)
                                                              aatttaAAAAATAGCCCTAAAGTTTAAATACAAAAAAATACTCTGGTGACCAGTACTCTGGTTTTTTTAATTGTCGAGGCACAATTATATTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTc                                                                                        <  2:2108913/148‑1 (MQ=255)
                                                                  aaaaaaaTAGGCATTATGTTTACATACAAAAACATACTGTGGTGACCAGTACTCTGGTTTTTTTATTTGTCGAGTAAAAAGTCTTTTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCtttt                                                                                    <  1:2060869/146‑1 (MQ=255)
                                                                   aaacaaTAGGCCTTATGGTTACATACAAAAACATACTCTGGTGACCAGTACTGTGGTTTTTTTAATTGTCGAGGCTCATGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCttttt                                                                                   <  2:3134138/145‑1 (MQ=255)
                                                                      aaaTAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTtat                                                                                >  1:825390/1‑149 (MQ=255)
                                                                      aaaTAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTtat                                                                                >  1:1350608/1‑149 (MQ=255)
                                                                       aaTAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTtata                                                                               >  1:1097885/1‑149 (MQ=255)
                                                                        attggatttAAGTTTACATACCAAAAAATACTCTGGTGACCATTACTCTGGTTTTTTTATTTTTCGAGGCTAAAGTCTTTTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTatat                                                                              <  2:2744524/142‑1 (MQ=255)
                                                                         tAGGCCTTATGTTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGTTTTTTTAATTGTCTAGGCTAAAGTCTATTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATc                                                                             <  2:2839218/149‑1 (MQ=255)
                                                                           ggCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcga                                                                           >  1:1337122/1‑149 (MQ=255)
                                                                           ggCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcga                                                                           >  2:1004430/1‑149 (MQ=255)
                                                                            gCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgat                                                                          >  1:3360356/1‑149 (MQ=255)
                                                                            gCCTTAAGGTTAAATACAAAAACATAGTCGGGTGACCTGTACTCTGGTTTTTTTATTTGTCGAGGATAAATTCTTTTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgat                                                                          <  1:1400644/149‑1 (MQ=255)
                                                                              cTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCGGGGTTTTTTAATGGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgataa                                                                        <  2:4646877/149‑1 (MQ=255)
                                                                                 atggTTACATACAAAAACATACTCTGGTGACCAGTACTCTGGTTTTTTTATTTGTCGAGGCTAAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgataacga                                                                     <  2:1328562/147‑1 (MQ=255)
                                                                                 aaGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgataacga                                                                     >  2:2502128/1‑149 (MQ=255)
                                                                                 aaGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgataacga                                                                     >  1:2371389/1‑149 (MQ=255)
                                                                                   ggTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgataacgata                                                                   >  2:467052/1‑149 (MQ=255)
                                                                                   ggTAACATCCCAAAACATCCTGGGGTGACCAGTCCTGTGGGTTTTTTATTTGTCGTGGCTCATGTATTTTTGTACACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATcgataacgata                                                                   <  1:3647651/149‑1 (MQ=255)
                                                                                     ttACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCgataacgataac                                                                 >  2:4111351/1‑149 (MQ=255)
                                                                                      tACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAAcc                                                                >  2:3245720/1‑149 (MQ=255)
                                                                                      tACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAAcc                                                                >  2:767198/1‑149 (MQ=255)
                                                                                       aCATACCAAAACATACTCTGGTGACCAGTACTCTGGTTTTTTTAATTGTCTAGGCTCAAGTATATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCg                                                               <  2:1081086/149‑1 (MQ=255)
                                                                                           aCCAAAACATACTGGGGGGACCAGTACTGTGGTTTTTTTATTGGTCGCGGCTCAAGTATATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCgttgt                                                           <  1:1245520/149‑1 (MQ=255)
                                                                                            caaaaaCATCCTCTGGTGCCCAGTACTCTGGTTTTTTTAATTGTCGAGGCAAAAGTCTTTTTTTACACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCgttgtt                                                          <  1:489203/147‑1 (MQ=255)
                                                                                              aaaaCATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTgg                                                        <  2:2634783/149‑1 (MQ=255)
                                                                                               aaaCATACTCTGGTGACCAGTACTCTGGGTTTTTTATTTGTCGAGGCTCAAGTCTATTTGTACACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGt                                                       <  2:243241/149‑1 (MQ=255)
                                                                                                aaCATACTCTGGTGACCTGTACTCGGGGTTTTTTAGTGGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGtt                                                      <  2:1283115/149‑1 (MQ=255)
                                                                                                aaCATACTATGGTGACAAGTACTATGGGTTTTTTATTTGTCTAGGCTCATGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGtt                                                      <  2:4274020/149‑1 (MQ=255)
                                                                                                 aCAGACTCTGGGGACCTGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGttt                                                     <  2:1392927/149‑1 (MQ=255)
                                                                                                  cATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGtttt                                                    >  1:649265/1‑149 (MQ=255)
                                                                                                      ctctGGTGACCTGTACTCTGGGTTTTTTAATTGTCTCGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGt                                                <  2:4226328/149‑1 (MQ=255)
                                                                                                      ctctGGTGACCAGTACTCTGGTTTTTTTATTTGTCGCGCCTAACGTATATTTGAACACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGt                                                <  1:3601979/149‑1 (MQ=255)
                                                                                                         tGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTga                                             >  2:1615556/1‑148 (MQ=255)
                                                                                                             gACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAAt                                         >  2:2048433/1‑149 (MQ=255)
                                                                                                              aCCAGTACTCTGGTTTTTTTAATTGTCGCGGCACAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATc                                        <  1:2728557/149‑1 (MQ=255)
                                                                                                               ccAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCAGTTGCGAATCg                                       >  1:2349975/1‑149 (MQ=255)
                                                                                                                cAGTACTCTGGTTTTTTTAATTGTCGAGGCTCAATTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGc                                      <  1:1942813/149‑1 (MQ=255)
                                                                                                                 aGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCt                                     >  1:4361950/1‑149 (MQ=255)
                                                                                                                   tACACTGGTTTTTTTAATTGACGAGGCTCAAGTCTATTTGAAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTc                                   <  1:2713738/149‑1 (MQ=255)
                                                                                                                         gttttttttATTTGTCTTGTCTAATTTATATTTTTACACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCt                             <  1:1602274/146‑1 (MQ=255)
                                                                                                                         gggTTTTTTATTTGTCGAGGCTCATTTCTTTTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCt                             <  1:175929/149‑1 (MQ=255)
                                                                                                                         gggTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCt                             >  1:2522673/1‑149 (MQ=255)
                                                                                                                         gggTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCt                             >  1:996722/1‑149 (MQ=255)
                                                                                                                            ttttttAATTGACGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTgg                          <  2:835155/149‑1 (MQ=255)
                                                                                                                               tttAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGttt                       >  2:2053185/1‑149 (MQ=255)
                                                                                                                                ttATTTGTCGAGGCTCAAGTATATTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTc                      <  2:1248210/149‑1 (MQ=255)
                                                                                                                                   aTTGTCGTGGCTCAAGTCTTTTTGTACACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCaaa                   <  1:2867541/149‑1 (MQ=255)
                                                                                                                                    ttGTCGAGGCTCATGTGTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAAt                  <  2:3831727/149‑1 (MQ=255)
                                                                                                                                    ttGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTATTTTTTATATCGATAACGATAACCGTTTTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAAt                  >  2:3171034/1‑149 (MQ=255)
                                                                                                                                    ttGTCGAGGCTAAATTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAAt                  <  2:397183/149‑1 (MQ=255)
                                                                                                                                    tggTCGAGGCTCATGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAAt                  <  2:4349811/147‑1 (MQ=255)
                                                                                                                                      gTCGTGGCTCAAGTCTATTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCg                <  1:2612668/149‑1 (MQ=255)
                                                                                                                                       tCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCgg               >  1:4635754/1‑149 (MQ=255)
                                                                                                                                          aGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGgag            >  1:4303428/1‑149 (MQ=255)
                                                                                                                                          aGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGgag            >  1:6802/1‑149 (MQ=255)
                                                                                                                                             cacAAGTCTATTTTTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGGAGAAg         <  1:612202/147‑1 (MQ=255)
                                                                                                                                             cTCAAGTCTTTTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGGAGAAg         <  1:4541341/149‑1 (MQ=255)
                                                                                                                                              tCAAGTCTTTTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGGAGAAGt        <  2:2527881/149‑1 (MQ=255)
                                                                                                                                                aaGTCTATTTTAAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGGAGAAGTGa      <  1:4569890/149‑1 (MQ=255)
                                                                                                                                                 aGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGGAGAAGTGaa     >  1:1557372/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GCAATAGCCAAAATCTATCCACGCAACAAGAGGCGTTTTCACTAAGCCCATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCGTTGTTGGTTTTCCGTTGCGAATCGCTTCAACCCTTGGTTTCAAATCGGGAGAAGTGAAAAT  >  CP009273/3786594‑3786890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: