Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,822,339 A→C 12.3% Q12P (CAA→CCA) ‡ xanP → xanthine permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,822,3390AC12.3% 483.4 / 8.2 222Q12P (CAA→CCA) ‡xanPxanthine permease
Reads supporting (aligned to +/- strand):  ref base A (100/87);  new base C (30/5);  total (130/92)
Fisher's exact test for biased strand distribution p-value = 3.03e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 222 total aligned reads displayed.

ATAAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGGCGCT  >  CP009273/3822193‑3822486
                                                                                                                                                  |                                                                                                                                                   
ataAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAc                                                                                                                                                   <  1:303888/149‑1 (MQ=255)
 taAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAcc                                                                                                                                                  >  2:1361813/1‑149 (MQ=255)
   aaaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAcccg                                                                                                                                                >  1:4231063/1‑147 (MQ=255)
   aaaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCgg                                                                                                                                                >  1:4591219/1‑149 (MQ=255)
   aaaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCgg                                                                                                                                                <  2:4029642/149‑1 (MQ=255)
   aaaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCgg                                                                                                                                                >  2:2846505/1‑149 (MQ=255)
    aaaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGt                                                                                                                                               >  2:417416/1‑149 (MQ=255)
     aaaGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGtt                                                                                                                                              <  2:2301884/149‑1 (MQ=255)
       aGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgc                                                                                                                                            <  1:1085359/149‑1 (MQ=255)
          gCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCa                                                                                                                                         <  1:2758905/149‑1 (MQ=255)
          gCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCa                                                                                                                                         <  1:416849/149‑1 (MQ=255)
            aTTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGa                                                                                                                                       >  1:520541/1‑149 (MQ=255)
              ttATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACt                                                                                                                                     >  1:360506/1‑149 (MQ=255)
                aTCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGACTCa                                                                                                                                   >  2:4634648/1‑149 (MQ=255)
                  ctcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCaaa                                                                                                                                 >  1:3477847/1‑149 (MQ=255)
                  ctcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGACACaaa                                                                                                                                 >  1:4481336/1‑149 (MQ=255)
                   tcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCaaaa                                                                                                                                >  2:2118134/1‑149 (MQ=255)
                   tcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTTCGCAGACTCaaaa                                                                                                                                >  1:2201633/1‑149 (MQ=255)
                    cATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAc                                                                                                                               <  2:582048/149‑1 (MQ=255)
                       ttAAATATTTAGATTAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGTTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGc                                                                                                                            <  2:3855297/149‑1 (MQ=255)
                       ttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGc                                                                                                                            >  2:1032353/1‑149 (MQ=255)
                          aaTTTTTAGATGTGGTTGTGGAAACCGTTTGCTTTTCTCTTAGGGTCAGCTAAACTGCCCGCTTTGCTACCAGGGGTTTGTTTTCGATGTCTGTTACCACCCTCGAGTCAGAAATTGCGCACCCGGTCGCGCAGACTCAAAACAGCGaa                                                                                                                         <  1:372073/149‑1 (MQ=255)
                           atatTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCCGGTGCGCCGACACAAAACACCGAAc                                                                                                                        >  1:1950664/1‑149 (MQ=255)
                            tatTTATATGAGTATGTGGAAAACTTTTGCTTTTCTATTTCGGTCAGCTAAATTGCCCGCTTTGCTACCACGGTTTTGTTTTCGATGTCTGTTTCCACCCTCGAGTCATAAAATGCGAAACCGGTTGCGCAGACTCAAAACAGCGAACt                                                                                                                       <  2:1511481/149‑1 (MQ=255)
                               ttAGATGAGGTTGTGGCAAAGGTTTGCTTTTCTCTTTCGGTCCGCTAAAATGCCCGCTTTGCTACCAGGGGTTTGTTTTCGTTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGAt                                                                                                                    <  2:945971/149‑1 (MQ=255)
                               ttAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGAt                                                                                                                    >  2:2456016/1‑149 (MQ=255)
                                tAGTTGTGGATGTGGCAAAGGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCCCCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGAtt                                                                                                                   <  2:3948066/149‑1 (MQ=255)
                                 aGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGAttt                                                                                                                  >  2:2473714/1‑149 (MQ=255)
                                 aGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGACACAAAAAAACGAACAGAttt                                                                                                                  >  1:2126263/1‑149 (MQ=255)
                                    tGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACACAAAACAGCGAACAGATTTAcc                                                                                                               >  2:2160607/1‑149 (MQ=255)
                                     gAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGGTGCGCAGACGCAAAACAGCGAACAGATTTACCg                                                                                                              >  1:4211627/1‑149 (MQ=255)
                                      aGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCACGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAAACGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGt                                                                                                             >  2:1619018/1‑149 (MQ=255)
                                        gATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACAGATTTACCGTCt                                                                                                           >  2:1589014/1‑149 (MQ=255)
                                              tcaatattttGTTTTTTTTTTTCGGTCATCTAAATTGCCCTCTTTGCTACCAGGGGTTTGTTTTCGTTGTCTGTTTCCACCCTAGCGTCATAAAATGCGCAACGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGa                                                                                                     <  2:1676288/142‑1 (MQ=255)
                                               cAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCCGACACAAAAAACCGAACAGATTTACCCTCTTGAAGAt                                                                                                    >  1:1831499/1‑149 (MQ=255)
                                               cAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGGTGCGCCGACTCAAAAAAGCGAACTGATTTAACGTCTTGAAGaa                                                                                                    >  1:653655/1‑148 (MQ=255)
                                                 acggtttgtttTTCTTTTTGGGTCCGATAAATTGCCCGCTTTGCTACCTGGGGTTTGTTTTCGATGTCTGTTCCCACCCTCGAGTCCGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCg                                                                                                  <  1:1142818/146‑1 (MQ=255)
                                                  tcGTTTGTTTTTCTCTTTCGGTCAGCTAAACTGCCGGATTTGCTACCTCGGTTTTTTTTTCGTTGTCTGTTACCACCCTCGAGTCATAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGt                                                                                                 <  1:2693428/148‑1 (MQ=255)
                                                  aCGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATAGt                                                                                                 >  2:3187846/1‑149 (MQ=255)
                                                    gTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGTTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTcc                                                                                               <  2:4310890/149‑1 (MQ=255)
                                                    gTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGGGCAGACACAAAAAACCGACCTGATTTTACGTGTTGTAGATAGtac                                                                                               >  1:824105/1‑147 (MQ=255)
                                                    gTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCCGACTCAAAAAAGCGAACTGATTTAACGTCTTGAAGATAGTcc                                                                                               >  1:3813359/1‑149 (MQ=255)
                                                    gTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTcc                                                                                               <  2:4591219/149‑1 (MQ=255)
                                                     tttGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAATATCGTccg                                                                                              >  2:3359858/1‑149 (MQ=255)
                                                       tGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCCCCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTccgcc                                                                                            <  2:648797/149‑1 (MQ=255)
                                                          ttttCTCTTTCGGTCCGCTAAATTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCt                                                                                         <  2:1537266/149‑1 (MQ=255)
                                                          ttttCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAAAGCGAACAGAATTAACGTCTTGAAGATAGTCcgccgcg                                                                                         >  1:1874865/1‑148 (MQ=255)
                                                          ttttCTCTTGCGGTCATCTAAAATGCCCGCTTTGCTACCAGGGTATTGTTTTCGTTGTCTGTTTCCACCCTCTAGTCATAAATTGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCt                                                                                         <  1:304513/149‑1 (MQ=255)
                                                              ctctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTTCGCAGACTCAAAAAAGCGAAATGATTTACCGTATTTAAGATAGTCCGCCGCGTcca                                                                                     >  1:4650430/1‑148 (MQ=255)
                                                              ctctTGCGGACAGATAATAGGCCCGTTTTGATACCACGGTTTTTTTTTCGATTTCTGTTACCACCCTCGAGTAAGAAAAGGCGCACCCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCt                                                                                     <  1:369385/149‑1 (MQ=255)
                                                               tctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGACTCAAAACACCGAACAGATTTACCGTCTTGAATATCGTCCGCCGCTTccac                                                                                    >  1:1291208/1‑147 (MQ=255)
                                                                     ggTCAGCTAAAATGCCCGCTTTGCTACCACGGTATTGTTTTCGTTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAAccc                                                                              <  2:3967726/149‑1 (MQ=255)
                                                                     ggTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAG‑AAATGCGCCACCGGGTGCGCAGACTCAAAACAGCGAACGGATTTACCGTCTTGAAGATCGTCCGCCGCGGCCTCAAAccca                                                                             >  1:3401477/1‑148 (MQ=255)
                                                                      gTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCAACCGGTTGGGCAGACTCAAAACAGCGAACAGATTTACCGTCTTGAAGATCGTCCGCCGCGTCCACAAAccca                                                                             >  1:4545385/1‑148 (MQ=255)
                                                                      gTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCt                                                                             >  2:3793866/1‑149 (MQ=255)
                                                                      gTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCt                                                                             >  2:1457647/1‑149 (MQ=255)
                                                                      gTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCt                                                                             >  2:1203760/1‑149 (MQ=255)
                                                                      gTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCt                                                                             >  2:2222026/1‑149 (MQ=255)
                                                                      gTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGGTGCGCAGACTCAAAAAAGCGAACAGATTTACCGTCTTGAAGATAGTCCGCCGCGTCCGCAAAccca                                                                             >  1:4371458/1‑148 (MQ=255)
                                                                        cAGCTAATCTGCCCGTTTTGCTACCTGGTTTTTGTTTTCGTTTTGTTTGCCCACCCTCTAGTCATAATAGGCGCACCGGTTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGt                                                                           <  1:2494422/149‑1 (MQ=255)
                                                                             aaaaTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACAGATTTACCGTCTTGAAGATCGTCCGCCGCGTCCACAAACCCGGTTTtcc                                                                      >  1:238663/1‑149 (MQ=255)
                                                                              aaaTGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCCGTTGCGCAGACACAAAAAAGCGAACAGATTTAACGTCTTGAAGATAGTCCGCCGCGTCCACAAACCCAGTTTgccg                                                                     >  1:4054669/1‑149 (MQ=255)
                                                                                  gCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGGGCCACCGGTTGCGCAGACACAAAACAACGAACTGATTTTCCGTCTTGTAGATCGTACCCCGCGTCCTCAAACACAGTTTggcgccag                                                                 >  1:43246/1‑147 (MQ=255)
                                                                                  gCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTg                                                                 >  2:2580642/1‑149 (MQ=255)
                                                                                   cccTCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGt                                                                <  2:2611353/149‑1 (MQ=255)
                                                                                   cccGCTTGGCGCCCCCGGGATTGTTTTCGCTGTCTGCTTCCACCCTCGAGGCAGAAAATGCGCAACCGGTTGCGCAGACTCAAACCAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAACCCCTGTTTGCCGCCTGt                                                                <  2:3778037/149‑1 (MQ=255)
                                                                                      gCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAg                                                             >  2:3568042/1‑149 (MQ=255)
                                                                                       cTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTAAAAAAAGCCAACTGATTTACCGGCTTGAAGATCGTCCGCCGCTTCCACAAACCCAGGTTGCCGCCTGTCAGc                                                            >  1:2907435/1‑149 (MQ=255)
                                                                                        tttGCTACCCGGGGTTTGTTTTCGTTGTCTGTTTCCACCCTCGATTCAGAAAATGCGCACCCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCa                                                           <  1:519725/149‑1 (MQ=255)
                                                                                           gCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGTTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATct                                                        <  2:704995/149‑1 (MQ=255)
                                                                                             tACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACACAAAACAGCGAACTGATTTAACGGCTTTAATATCGTCCGCCGCGTCCACAAACCCTGTTTTCCGCCAGTCACCATctgc                                                      >  1:2879031/1‑149 (MQ=255)
                                                                                              aCCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATctgct                                                     <  2:4609336/149‑1 (MQ=255)
                                                                                                    ggATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCCGACTCAAAACAGCGAACTGATTTAACGTCTTGAAGATCGTCCGCCGCGTCCTCAAACCCAGTTTTCCGCCAGTCAGCAACAGCTGGCGAt                                               >  1:2615614/1‑149 (MQ=255)
                                                                                                     gATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGGTGCGCAGACTCAAAAAAGCGAACAGATTTAACGTCTTGAAGATCCTCCGCCGCATACTCAAACCCAGTTTGCCGCCAGTCAGCAACTGCTGGCGATg                                              >  1:2006711/1‑149 (MQ=255)
                                                                                                       ttGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGtt                                            >  2:3815496/1‑149 (MQ=255)
                                                                                                           tttCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGtt                                        <  2:3685591/149‑1 (MQ=255)
                                                                                                            ttCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAAAGCGAACTGATTTACCGTCTTGAAGATAGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTg                                       >  2:4413289/1‑149 (MQ=255)
                                                                                                             tCGATGTCTGTTTCCACCATCGATTCAGAAAATGCGCAACCTTTTGCGCAGACTCAAATCAGCGATCTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGc                                      <  2:3081656/149‑1 (MQ=255)
                                                                                                              cGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCCACCGGTTGCGCAGACTCAAAAAAGCGAACTGATTTACCCTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTGTTCCGCCAGTCAGCATCTGCTGTCGATGTTCGTTGCg                                     >  2:4286401/1‑149 (MQ=255)
                                                                                                               gATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGGTGCGCAGACACAAAACAGCGAAAAGATTTACCGGCTTGAAGATCGGCCGCCGCGTCCACAAACCCAGTTTGCCGCCGGTCAGCATCTGCTGGCGATGTTCGTTGCgg                                    >  1:2338335/1‑149 (MQ=255)
                                                                                                               gATGTCTGTTGCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCgg                                    <  2:1007562/149‑1 (MQ=255)
                                                                                                                aTGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCCGTTGCGCAGACTCAAAAAAGCGAACTGATTTACCGTCTTTAATATAGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCAGTCAGCAACTGCTGGCGATGTTCGTTGCGGt                                   >  1:705929/1‑149 (MQ=255)
                                                                                                                   tCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGAt                                <  2:4512733/149‑1 (MQ=255)
                                                                                                                   tCTGTTTCCACCCTCGAGGCCGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCGTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGAt                                <  2:297069/149‑1 (MQ=255)
                                                                                                                     tGTTTCCCCCCTCGCTCCCGAAATTGCGCCCCCGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAACCCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCa                              <  1:2978392/149‑1 (MQ=255)
                                                                                                                         gccccccTCGAGACAGAATCGGCGCACCCGGGGCCCCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGcc                          <  1:3913515/145‑1 (MQ=255)
                                                                                                                           cccccTCGAGACAGAATTTGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAg                        <  1:1630607/147‑1 (MQ=255)
                                                                                                                                tCGAGTCAGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTa                   <  2:2201633/149‑1 (MQ=255)
                                                                                                                                  gAGTCAGAAATTGCGCACCCGGGGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTAtt                 <  2:878505/149‑1 (MQ=255)
                                                                                                                                   agacataaaaGGCGCACCGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTa                <  1:1694408/143‑1 (MQ=255)
                                                                                                                                     gaaGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAAt              <  2:4368660/147‑1 (MQ=255)
                                                                                                                                      cAGAAATTGCGCCACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATc             <  1:1435109/149‑1 (MQ=255)
                                                                                                                                      aataaatTGCGCACCGGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATc             <  1:4154287/146‑1 (MQ=255)
                                                                                                                                      aataaaaTGCGCCCCCGGTGCCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATc             <  1:3187846/146‑1 (MQ=255)
                                                                                                                                       aGAAAATGCGCACCCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCt            <  2:2655663/149‑1 (MQ=255)
                                                                                                                                        gAAAATGCGCAACCGGTTGCGCAGACACAAAACAGCGAACAGATTTACCGTCATGAAGATCGTCCGCCGCTTCCTCAAACACTGGTTGCCGCCAGTCAGCATCTGCTGGCGAGGTTCGTTGCGGTGATCACGCCACCGCTATTACTCTg           >  2:3384002/1‑149 (MQ=255)
                                                                                                                                         aaaaTGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGAATTACCGTCTTGCAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGCTGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGc          >  2:3516845/1‑149 (MQ=255)
                                                                                                                                          aatggcgcACCGGGTGGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGcc         <  1:3096967/145‑1 (MQ=255)
                                                                                                                                                gcAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGgcgc   >  2:514760/1‑149 (MQ=255)
                                                                                                                                                 cAACCGTTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGGCGCt  <  2:1975232/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
ATAAAAAAGTGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCGTCCGCCGCTTCCTCAAACCCTGTTTGCCGCCTGTCAGCATCTGCTGGCGATGTTCGTTGCGGTGATCACGCCAGCGCTATTAATCTGCCAGGCGCT  >  CP009273/3822193‑3822486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑