Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,919,832 T→A 11.8% intergenic (‑17/+73) mioC ← / ← asnC FMN‑binding protein MioC/transcriptional activator of asnA; autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,919,8320TA11.8% 956.2 / 101.6 294intergenic (‑17/+73)mioC/asnCFMN‑binding protein MioC/transcriptional activator of asnA; autorepressor
Reads supporting (aligned to +/- strand):  ref base T (104/155);  new base A (10/25);  total (114/180)
Fisher's exact test for biased strand distribution p-value = 2.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 310 total aligned reads displayed.

TAAATCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTT  >  CP009273/3919684‑3919980
                                                                                                                                                    |                                                                                                                                                    
tAAATCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTttatt                                                                                                                                                      >  1:525802/1‑149 (MQ=255)
tAAATCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTttatt                                                                                                                                                      >  1:149750/1‑149 (MQ=255)
    tcttctAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                                                                                                                                                  <  1:3434259/149‑1 (MQ=255)
    tcttctAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                                                                                                                                                  <  1:616249/149‑1 (MQ=255)
        ctAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTgg                                                                                                                                              <  2:4470688/149‑1 (MQ=255)
        ctAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTgg                                                                                                                                              <  2:783990/149‑1 (MQ=255)
          aaCAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCg                                                                                                                                            >  1:2290977/1‑149 (MQ=255)
                ggACCGTGCAGCGTTTCGGTGGTAAAACACGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGt                                                                                                                                      >  1:576376/1‑149 (MQ=255)
                 gACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTa                                                                                                                                     >  1:1245247/1‑149 (MQ=255)
                       gCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCtgt                                                                                                                               <  2:2508262/149‑1 (MQ=255)
                           cGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATCTTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAc                                                                                                                           <  1:3608999/149‑1 (MQ=255)
                           cGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATAAAGAGTGGCGTATTGTACGCTGTGAAc                                                                                                                           <  1:446448/149‑1 (MQ=255)
                           cGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATAAAGAGTGGCGTATTGTACGCTGTGAAc                                                                                                                           <  1:2771043/149‑1 (MQ=255)
                            gTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcg                                                                                                                          <  2:1028934/149‑1 (MQ=255)
                            gTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcg                                                                                                                          >  1:2112162/1‑149 (MQ=255)
                             tttCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcgc                                                                                                                         <  2:885121/149‑1 (MQ=255)
                             tttCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcgc                                                                                                                         >  2:2314737/1‑149 (MQ=255)
                             tttCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcgc                                                                                                                         <  1:1912427/149‑1 (MQ=255)
                               tCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt                                                                                                                       <  1:1052346/149‑1 (MQ=255)
                               tCGGTGGTAAAACCCGCCTCGTCCAGCTGTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt                                                                                                                       <  2:188975/149‑1 (MQ=255)
                                cGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGtt                                                                                                                      <  1:938669/149‑1 (MQ=255)
                                cGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGtt                                                                                                                      <  2:1087854/149‑1 (MQ=255)
                                    ggtAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTCCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATAAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGa                                                                                                                  <  1:3064074/149‑1 (MQ=255)
                                     gtAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGAt                                                                                                                 <  1:1500655/149‑1 (MQ=255)
                                      tAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATc                                                                                                                <  2:3935838/149‑1 (MQ=255)
                                        aaaCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTa                                                                                                              <  1:2647474/149‑1 (MQ=255)
                                        aaaCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTGTATTAAGAGTGGCGGATTGTACGCTGTGAACGCGTTGGGATCTa                                                                                                              >  1:3151261/1‑149 (MQ=255)
                                         aaCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCGTTATAAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTAc                                                                                                             >  1:1559310/1‑149 (MQ=255)
                                          aCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTAcc                                                                                                            <  2:3390066/149‑1 (MQ=255)
                                            ccGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCtg                                                                                                          >  1:2908196/1‑149 (MQ=255)
                                             cGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCtgt                                                                                                         >  2:1572859/1‑149 (MQ=255)
                                             cGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCtgt                                                                                                         >  1:3845974/1‑149 (MQ=255)
                                             cGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATAAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCtgt                                                                                                         <  2:4405181/149‑1 (MQ=255)
                                              gCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCtgtg                                                                                                        <  1:3340595/149‑1 (MQ=255)
                                               ccTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTgg                                                                                                       <  1:3109299/149‑1 (MQ=255)
                                                 tctTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGaa                                                                                                     >  2:1271596/1‑149 (MQ=255)
                                                 tctTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGaa                                                                                                     >  1:4360549/1‑149 (MQ=255)
                                                    tCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAg                                                                                                  >  1:254089/1‑149 (MQ=255)
                                                    tCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAg                                                                                                  <  1:709325/149‑1 (MQ=255)
                                                     ccAGCTTTTCAGCCAGATGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATAAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGt                                                                                                 <  2:3750427/149‑1 (MQ=255)
                                                      cAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTa                                                                                                >  2:1845996/1‑149 (MQ=255)
                                                       aGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTAt                                                                                               <  1:1187057/149‑1 (MQ=255)
                                                           tttCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGa                                                                                           <  2:3861601/149‑1 (MQ=255)
                                                            ttCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGAt                                                                                          <  1:920008/149‑1 (MQ=255)
                                                             tCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTGTTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGAtt                                                                                         <  2:3133118/149‑1 (MQ=255)
                                                                gCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATAAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTaaa                                                                                      >  2:3620067/1‑149 (MQ=255)
                                                                 ccAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTaaaa                                                                                     >  2:4067042/1‑149 (MQ=255)
                                                                  cAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTaaaaa                                                                                    >  2:2459642/1‑149 (MQ=255)
                                                                  cAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTaaaaa                                                                                    >  1:4632547/1‑149 (MQ=255)
                                                                   aGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTaaaaaa                                                                                   <  2:4640164/149‑1 (MQ=255)
                                                                    ggTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAg                                                                                  >  1:2077678/1‑149 (MQ=255)
                                                                       gtTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCg                                                                               <  1:112869/149‑1 (MQ=255)
                                                                         tCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGAt                                                                             <  2:1993505/149‑1 (MQ=255)
                                                                         tCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGAt                                                                             <  2:3486301/149‑1 (MQ=255)
                                                                          cTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATc                                                                            >  2:3548837/1‑149 (MQ=255)
                                                                           tGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCa                                                                           >  1:4518181/1‑149 (MQ=255)
                                                                            gCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAg                                                                          <  1:798833/149‑1 (MQ=255)
                                                                            gCTACATAGTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAg                                                                          <  1:3534485/149‑1 (MQ=255)
                                                                            gCTACATAGTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCGGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAg                                                                          <  1:2275808/149‑1 (MQ=255)
                                                                             cTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAgg                                                                         >  2:4347611/1‑149 (MQ=255)
                                                                             cTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAgg                                                                         <  2:2066864/149‑1 (MQ=255)
                                                                                cATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGACAAGTATGGGATTAAAAAAGCCGATCAGGGCt                                                                      >  2:506127/1‑149 (MQ=255)
                                                                                  tatTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAACAGCCGATCAGGGCTTg                                                                    >  2:4646224/1‑149 (MQ=255)
                                                                                  tatTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTg                                                                    <  2:81213/149‑1 (MQ=255)
                                                                                      cGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATgg                                                                <  2:3812278/149‑1 (MQ=255)
                                                                                               cgAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGa                                                       <  2:4125622/149‑1 (MQ=255)
                                                                                                 aGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATc                                                     >  2:2850505/1‑149 (MQ=255)
                                                                                                     tgctgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGt                                                 <  1:1678437/149‑1 (MQ=255)
                                                                                                      gctgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGtt                                                <  2:3045268/149‑1 (MQ=255)
                                                                                                      gctgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGtt                                                <  2:3000388/149‑1 (MQ=255)
                                                                                                       ctgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGttt                                               <  1:4029245/149‑1 (MQ=255)
                                                                                                        tgcCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTCTTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGtttt                                              <  2:3709918/149‑1 (MQ=255)
                                                                                                          ccGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGc                                            <  2:550204/149‑1 (MQ=255)
                                                                                                             cTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAgg                                         <  1:2363942/149‑1 (MQ=255)
                                                                                                              tGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGa                                        >  1:4551171/1‑149 (MQ=255)
                                                                                                               gATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGAc                                       >  1:2931234/1‑149 (MQ=255)
                                                                                                                 tAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGa                                     >  1:4245541/1‑149 (MQ=255)
                                                                                                                 tAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGa                                     >  1:1423780/1‑149 (MQ=255)
                                                                                                                   agagTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATc                                   <  2:311879/149‑1 (MQ=255)
                                                                                                                   agagTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATc                                   <  2:1740404/149‑1 (MQ=255)
                                                                                                                       tGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATg                               <  1:1638562/149‑1 (MQ=255)
                                                                                                                       tGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATg                               <  2:1463153/149‑1 (MQ=255)
                                                                                                                         atatCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGtc                             >  2:1947620/1‑149 (MQ=255)
                                                                                                                         atatCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGtc                             <  1:3760696/149‑1 (MQ=255)
                                                                                                                            tCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCg                          >  2:3171482/1‑149 (MQ=255)
                                                                                                                                ccATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTgg                      >  1:4201708/1‑149 (MQ=255)
                                                                                                                                 cATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGa                     >  2:4183438/1‑149 (MQ=255)
                                                                                                                                  aTAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGGTGGGATCTACCGGTGGCAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGAc                    >  2:3210204/1‑149 (MQ=255)
                                                                                                                                     aaCCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGa                 <  1:2467028/149‑1 (MQ=255)
                                                                                                                                     aaCCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGa                 <  2:1512865/149‑1 (MQ=255)
                                                                                                                                       ccGCCACCTTTATAAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAAt               <  1:210310/149‑1 (MQ=255)
                                                                                                                                        cGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCGTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAAtt              <  2:2560723/149‑1 (MQ=255)
                                                                                                                                         gCCACCTTTATTCAGAGGGGCGTAGTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGAGCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAAttt             <  2:2482626/149‑1 (MQ=255)
                                                                                                                                            aCCTTTATAAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTtcat          >  1:3973682/1‑149 (MQ=255)
                                                                                                                                             ccTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTtcatc         <  1:2811771/149‑1 (MQ=255)
                                                                                                                                              cTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTtcatca        <  1:241541/149‑1 (MQ=255)
                                                                                                                                                ttattaAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAAt      <  1:1873198/149‑1 (MQ=255)
                                                                                                                                                ttattaAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAAt      <  1:2249631/149‑1 (MQ=255)
                                                                                                                                                  attaAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTg    <  2:4039386/149‑1 (MQ=255)
                                                                                                                                                    taAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGtt  >  2:1115963/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TAAATCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGTTGGGATCTACCTGTGGAAAAGTATGGGATTAAAAAAGCCGATCAGGGCTTGATGGTACGCATGATCGGGTTTTGCAGGACGATCAATGTCTCGGTGGACTGAATTTCATCAATTGTT  >  CP009273/3919684‑3919980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: