| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,080,364 | G→T | 11.0% | M1M (ATG→ATT) † | yiiG → | DUF3829 family lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,080,364 | 0 | G | T | 11.0% | 575.5 / 4.1 | 182 | M1M (ATG→ATT) † | yiiG | DUF3829 family lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (66/88); new base T (26/2); total (92/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.23e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 183 total aligned reads displayed.
TAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGAA > CP009273/4080216‑4080511 | tAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGAGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATg < 2:3438959/149‑1 (MQ=255) gTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGaaa < 2:3072411/149‑1 (MQ=255) gctaaaTATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGaa < 2:2789163/146‑1 (MQ=255) gAAATATATTAAATTGCAGGACTTATTCATTTCGTTAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAAtt < 2:1974407/149‑1 (MQ=255) gAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAAtt < 2:1974404/149‑1 (MQ=255) aaaTATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAAttt < 2:3836927/149‑1 (MQ=255) aaaTATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAAttt < 1:4395731/149‑1 (MQ=255) aaaTATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAAttt < 2:3244478/149‑1 (MQ=255) aaaTATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATGTTCACTAACTTTTCTATATATTTATAAGGCAATTAAAATAAAATGAAatt > 2:4443900/1‑149 (MQ=255) aaTATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATtta < 2:1302112/149‑1 (MQ=255) atatatTAAATTGCAGGACTAATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATttat < 2:4090346/149‑1 (MQ=255) tatatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATttatt < 2:429854/149‑1 (MQ=255) tatatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATGTTAAATCTCTTATCTATATATTTATAATGCAATTAAATGAAAAGGAATttatt > 2:4581872/1‑149 (MQ=255) atatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTTTTTTTTAATTTTTTATTTTTAATGTATTTTATATAAATTTTTAAGTGAATTTAAATAAAAATAAattattt > 2:3520112/1‑148 (MQ=255) atatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATttatta < 2:2378945/149‑1 (MQ=255) atatTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATttatta < 1:3382808/149‑1 (MQ=255) atTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATc < 2:3110603/149‑1 (MQ=255) tAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCtt < 2:704846/149‑1 (MQ=255) tAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCtt < 2:1417600/149‑1 (MQ=255) tAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCtt < 2:1417823/149‑1 (MQ=255) aTTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATGTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCg < 1:64850/149‑1 (MQ=255) gCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCta < 1:1752799/149‑1 (MQ=255) gCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTAATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATTAAAAGGAATTTATTATATTACGcga > 2:3008577/1‑147 (MQ=255) gCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTAATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAATGAATTTATTATCTTACGCta > 2:667654/1‑149 (MQ=255) ggACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTGATTTTTTATTTTATCTCACTTATCTATATATTTATAAGGCAAATAAATTAAAATTAATTTATTATATTAAGCtatta > 1:1565803/1‑149 (MQ=255) aTTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATGTATTATTTTGAATCTCGTATCTATATATTTATTATGCAATTAAATGTAAAGGACATTATTTTCTTACGCTATtttattag > 2:2545349/1‑145 (MQ=255) aTTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTGTTTTTTGATTTTTTATTTTGACGCACTTATATATATATTTTTAATGGAAATAAATTTAAAGGGATTTATTATAATACGGTATTATATTGGCcaa > 1:4241493/1‑148 (MQ=255) tttCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCcatc < 2:362682/149‑1 (MQ=255) ttCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCcatca < 2:3370252/149‑1 (MQ=255) gTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGt < 2:4421752/149‑1 (MQ=255) aaTTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTCATTTATTATGTTCACTCACTTATATATAAATTTATAATGCAAATAAATGAAAAGGAATTTATTATAATCCGCTATTATAGTAGCCAACATGTccc > 2:725685/1‑149 (MQ=255) aaTTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTGTTGTTTTTTGATTTATTATGTTCACAAGCATATCTAAATATTTATAAAGCAATTAAATTGAAAGGAATTTATTATTATACGCGAATATATTAGCcaacaattaac > 2:866029/1‑143 (MQ=255) attttattattttattTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTGATTTATTTTGTTGACTCTCTTATCTATATATTTATAAGGCCATTAAATTAAAATGAATTTATTATCTTCCGCTATTTTAGTCGCCAGCATGTCCCt > 2:184366/1‑149 (MQ=255) tttattattttattTATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATTTTCACTCTCTTATGTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCg > 2:1845359/1‑149 (MQ=255) attattttattTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATGAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTc < 1:2364868/149‑1 (MQ=255) attattttattTATAAACAAAATGCGTGTAGTGGCGTGTTTTTTTTTGATTTTTTATGTTGAATATCTTTTCTATATATTTATTAGGGAATTAAATTTAAAGGAATTTATTTTATTACGCTATTATATTAGCCATCAATTCCCAAGGTc > 2:559726/1‑149 (MQ=255) tattttatttATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATTTTCACTCTCTTATCTATATATTTATAAGGCAAATAAATGAAAAGGAATTTATTATATTCCGCTATTATATTCGCCATAAAGTCCCTCGGTCTg > 2:3451585/1‑149 (MQ=255) attttatttATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGa < 1:1092925/149‑1 (MQ=255) ttttatttATAAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTTTTATTTTTACAAACATTTATATATAATTTTTATGCCAATAAAAGAAAATGAATTTATTATATTACGGGCTTATATTAGGCATCATTTACCGCGGTCTgtc > 2:3938771/1‑147 (MQ=255) tttatttaTAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACg < 1:268222/149‑1 (MQ=255) ttttatAAACAAATTGCGTGTAGTGTCTTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATTTATTTATTAGGCAATTAAATTAAAAGGAATTTATTTTCTTCCGCTATTATAGTCGCCATCATGTCCCTCGTTCTGACGGGt < 1:2033435/148‑1 (MQ=255) atttatAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGt < 2:2785593/149‑1 (MQ=255) atttatAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGt < 1:2535899/149‑1 (MQ=255) ataAACAAAATGCGTGTAGTGGCGTTTTATTTTTTAATTTATTATTTTAACTCTCTTATATATATATTTATAAGGCAATTAAATTAAAAGGAATTTATTATATTACGCTATTATATTAGCCATAATTTACCTCGGTCTGACGGGTtgtg > 2:4146754/1‑149 (MQ=255) taAACAAAATGCGTGTAGTGGCGTTTTGTTTTTTAATTTATTTTTTTGACTCTATTATAGATATATTTATAATGCAATTAAATTTAAAGGTATTTATTAAATTCCGCGATTTTAGTAGCCCTCAAGTACCACGGTCTGACGGGGTGtga > 2:3728719/1‑149 (MQ=255) aaaCAAAATGCGTGTAGTGGCGTTTTGTTTTTTGATTTATTTTTTTGACAATCTTATCTATATATTTATTATGCAAATAAATGAAAAGGAATTTATTTTATTAAGCTATTATATTAGCCATAATTTCCCTCGGTGTGACGGGTtgtgtt > 2:4080320/1‑147 (MQ=255) aaaCAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGtgat < 1:350755/149‑1 (MQ=255) aaaCAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGtgat < 1:1694073/149‑1 (MQ=255) aaaCAAAATGCGTGTAGTGGCGTTTTATTTTTTCATTTATTATGGTAACTCTCTTATCATTATATTTATAAGGCAAATAAATGAAAAGGAATTTATTATCTTCCGCTATTATATTCGCCATCATTTCCCTCGGTCTGACGGGTtggggt > 2:1888524/1‑145 (MQ=255) aCAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGtgatga < 1:1987784/149‑1 (MQ=255) cAAAATGCGTGTAGTGGCGTTTTCTTTTTTAATTTATTATTTTCACACTATTATCTATATATTTATAATGCAAATAAATTAAAATGAATTTATTATATTCCGCAATTATAGTAGCCAAAATTTCCCACGGTCGGTCGGGTTGtgttgtt > 2:644391/1‑147 (MQ=255) aaaTGCGTGTAGTGGCGTTTTATTTTTTAATTTATTTTTTTACCACTATTATCTATATAATTATAATGCAAATAAATTAAAAGGAATTTATTATATTACGCTATTATAGTCGCCAACAATTGCCACGGGCTGACGGGGTGTGATGAGaa > 2:4492999/1‑149 (MQ=255) aTGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATaaaa < 2:4413247/149‑1 (MQ=255) aTGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTAACTCACTTATATATATATTTTTAAGGCAAATAAATTAAAAGGAAATTTTTATCTTGAGCTATTATAGTCGCCATCATGTACCAAGGTCGGACGGGTTGTGATTATaaaa > 2:1949481/1‑149 (MQ=255) gCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATaaaaaa < 1:3270204/149‑1 (MQ=255) tgtAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGcc < 1:2320794/149‑1 (MQ=255) tgtAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGcc < 1:1908618/149‑1 (MQ=255) gTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGaaa < 2:4573234/149‑1 (MQ=255) tGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAAc < 1:1051674/149‑1 (MQ=255) tGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAAc < 1:1051698/149‑1 (MQ=255) tGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTACGCTATTATAGTAGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAAc > 2:1902800/1‑149 (MQ=255) cGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGa < 2:990711/149‑1 (MQ=255) tCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGc < 2:4651545/149‑1 (MQ=255) tCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGc > 1:3444933/1‑149 (MQ=255) tCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGc < 2:1242759/149‑1 (MQ=255) tttCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCg > 1:3908397/1‑149 (MQ=255) cATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCt > 1:2672215/1‑149 (MQ=255) cATTTATTATGTTCACTCTCTTATATATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCt < 2:1305681/149‑1 (MQ=255) attatGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCaa > 1:460095/1‑149 (MQ=255) ttatGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAAt < 2:1565803/149‑1 (MQ=255) ttatGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAAt < 2:1381425/149‑1 (MQ=255) ttatGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAAt > 1:389472/1‑149 (MQ=255) atGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAg > 2:2302795/1‑149 (MQ=255) atGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAg < 1:286793/149‑1 (MQ=255) tGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAATCCGAAACAGAAACGCTCCCGCCTGCCAATAGt > 1:1468732/1‑149 (MQ=255) tGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGt < 1:1464005/149‑1 (MQ=255) gTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTc > 2:2672103/1‑149 (MQ=255) aCTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAAcc > 2:4228108/1‑149 (MQ=255) aCTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAAcc < 2:2482728/149‑1 (MQ=255) aCTCTCTTATATATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGATATTATAGTCGCCATCTTGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCTAAACAGACACGCTCCCGCCTGCCAATAGTCAAcc < 1:4005363/149‑1 (MQ=255) ctctctTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCt < 1:3679286/149‑1 (MQ=255) ctctctTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCt < 1:941724/149‑1 (MQ=255) ctctTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGc < 2:652336/149‑1 (MQ=255) ttATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGc > 1:3364115/1‑149 (MQ=255) ttATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGc > 1:2615242/1‑149 (MQ=255) tCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCAcc > 1:4260178/1‑149 (MQ=255) atatatTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCCATAGTCAACCTGCCGCACCAGc > 2:3997667/1‑149 (MQ=255) atatatTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGc > 2:287192/1‑149 (MQ=255) tatTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTcc < 1:1162006/149‑1 (MQ=255) tttATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTg > 2:1113520/1‑149 (MQ=255) ataAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAg > 2:767793/1‑149 (MQ=255) taAGGCATTTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGc < 2:3122314/149‑1 (MQ=255) ggCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaa > 2:2131738/1‑149 (MQ=255) ggCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGaa > 2:2642413/1‑149 (MQ=255) aaTTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAAcc > 1:3698661/1‑149 (MQ=255) ttAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTa > 1:1161168/1‑149 (MQ=255) tAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTAc < 2:3190908/149‑1 (MQ=255) aaaTGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCTTGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACt < 1:2774532/149‑1 (MQ=255) aTGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGa < 1:4560882/149‑1 (MQ=255) tGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGaa > 1:2962116/1‑149 (MQ=255) | TAAGTCCTGCGAAATATATTAAATTGCAGGACTTATTCATTTCGTGAATTTTATTATTTTATTTATAAACAAAATGCGTGTAGTGGCGTTTTCTTTTTTCATTTATTATGTTCACTCTCTTATCTATATATTTATAAGGCAATTAAATGAAAAGGAATTTATTATCTTCCGCTATTATAGTCGCCATCATGTCCCTCGGTCTGACGGGTTGTGATGATAAAAAAGCCGAAACAGAAACGCTCCCGCCTGCCAATAGTCAACCTGCCGCACCAGCTCCTGAAGCGAAACCTACTGAA > CP009273/4080216‑4080511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |