| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,142,369 | A→T | 18.0% | Y220N (TAC→AAC) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,142,369 | 0 | A | T | 18.0% | 749.7 / 160.3 | 283 | Y220N (TAC→AAC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base A (102/130); new base T (34/17); total (136/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.99e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 | |||||||||||
Only 100 of 290 total aligned reads displayed.
AGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTTGTGT > CP009273/4142221‑4142517 | aGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTa > 2:3241379/1‑149 (MQ=255) gCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTaa > 2:2961281/1‑149 (MQ=255) cAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAAt < 2:4174451/149‑1 (MQ=255) ggACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTAttt < 1:1897088/149‑1 (MQ=255) gTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTa < 1:3064651/149‑1 (MQ=255) gTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTa < 1:725126/149‑1 (MQ=255) tGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTAc > 1:4148229/1‑149 (MQ=255) tGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTATCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTAc < 2:2485856/149‑1 (MQ=255) cGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGcc < 2:3406366/149‑1 (MQ=255) gggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCt < 1:2428015/149‑1 (MQ=255) gggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCt < 2:3174236/149‑1 (MQ=255) gggTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCt > 2:4622309/1‑149 (MQ=255) gTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTg < 2:4404122/149‑1 (MQ=255) tGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGc < 2:2528855/149‑1 (MQ=255) atCGGCAGTGACGTTCGGTGTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTATCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCcaca < 1:174038/149‑1 (MQ=255) cGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAgg > 1:2008590/1‑149 (MQ=255) ggCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGc < 1:3141402/149‑1 (MQ=255) gTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGtt > 1:3262573/1‑149 (MQ=255) gTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGtt < 1:3593751/149‑1 (MQ=255) gTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGtt > 1:2335271/1‑149 (MQ=255) gTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGtt > 1:4090222/1‑149 (MQ=255) tGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGttt > 2:2920520/1‑149 (MQ=255) tGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGttt > 1:4374657/1‑149 (MQ=255) gACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGtttt < 1:4649990/149‑1 (MQ=255) gACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGtttt > 2:1833276/1‑149 (MQ=255) aCGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTc < 1:4009496/149‑1 (MQ=255) ttCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCAc > 2:1008649/1‑149 (MQ=255) cGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTa < 2:3038492/149‑1 (MQ=255) ggTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACg > 1:1291937/1‑149 (MQ=255) tGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCa > 2:197202/1‑149 (MQ=255) ccGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCaaa > 1:605373/1‑149 (MQ=255) ccGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCaaa > 1:118550/1‑149 (MQ=255) cGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAg < 1:511242/149‑1 (MQ=255) gcgGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGcccc > 2:1377765/1‑149 (MQ=255) cgGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCa < 2:3662186/149‑1 (MQ=255) gTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCAtt < 1:3959716/149‑1 (MQ=255) tCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCAttt < 1:354032/149‑1 (MQ=255) cgccgcCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTg < 1:4322324/149‑1 (MQ=255) gccgccCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTgg < 1:381839/149‑1 (MQ=255) ccgccCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGc < 2:965057/149‑1 (MQ=255) cgccCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCt < 2:1707914/149‑1 (MQ=255) cccATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTc < 2:4399108/149‑1 (MQ=255) aTCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATc < 1:1605078/149‑1 (MQ=255) aTCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATc < 1:2537257/149‑1 (MQ=255) tCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCt < 1:3622687/149‑1 (MQ=255) tCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCt > 2:4677935/1‑149 (MQ=255) tCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCt > 1:2297436/1‑149 (MQ=255) ccACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTa > 1:562121/1‑149 (MQ=255) cACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTAc > 2:3600254/1‑149 (MQ=255) aaaaCGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTg < 1:520796/149‑1 (MQ=255) aaaaCGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTg > 2:4313132/1‑149 (MQ=255) ggACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGc > 2:3543665/1‑149 (MQ=255) ggAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCtt < 2:3294918/149‑1 (MQ=255) aCAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACg > 2:2443856/1‑149 (MQ=255) aaaTTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGa > 2:4361965/1‑149 (MQ=255) aaTTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAt > 2:1184006/1‑149 (MQ=255) ggCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGt > 2:3777109/1‑149 (MQ=255) ggCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGt > 1:3006964/1‑149 (MQ=255) gCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTa < 1:4639288/149‑1 (MQ=255) cAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTAt < 2:1259022/149‑1 (MQ=255) cAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTAt < 2:1292843/149‑1 (MQ=255) gTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGc > 2:4082763/1‑149 (MQ=255) aGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGAc < 1:810394/149‑1 (MQ=255) aGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGAc < 2:654327/149‑1 (MQ=255) gCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACt < 1:3357745/149‑1 (MQ=255) ccGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTg < 2:4309640/149‑1 (MQ=255) ccGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTg < 2:1644758/149‑1 (MQ=255) gAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTggg > 2:1348388/1‑149 (MQ=255) gAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTggg > 1:4498992/1‑149 (MQ=255) gAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTggg < 2:3969273/149‑1 (MQ=255) gAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGAGTTCATCGGTATGCCATGACTggg > 2:3109429/1‑149 (MQ=255) aGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGc > 2:833656/1‑149 (MQ=255) ggTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCg < 2:158914/149‑1 (MQ=255) ggTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCg < 2:3889236/149‑1 (MQ=255) gTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGa < 1:2793169/149‑1 (MQ=255) tctcTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATc < 2:4660867/149‑1 (MQ=255) ctctTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCa > 1:1236409/1‑149 (MQ=255) ccAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTgg > 1:166473/1‑149 (MQ=255) cAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGgc > 2:1466542/1‑149 (MQ=255) cAGTTGTTCGTGCAGTTCGCGCAGGGAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGgc < 2:1990587/149‑1 (MQ=255) gttgttCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGgcgc > 2:4195163/1‑149 (MQ=255) ttgttCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCa < 1:1448174/149‑1 (MQ=255) tgttCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAg < 1:1717632/149‑1 (MQ=255) gttcgttcAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAgg > 1:1499919/1‑149 (MQ=255) tcgttcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCg < 1:1070932/149‑1 (MQ=255) cgttcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGa < 1:2126581/149‑1 (MQ=255) cgttcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGa < 1:200205/149‑1 (MQ=255) gttcAGTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGAc > 1:1268224/1‑149 (MQ=255) gttcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGAc > 2:3252105/1‑149 (MQ=255) gttcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGAc > 2:2415357/1‑149 (MQ=255) tcAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGc < 1:42473/149‑1 (MQ=255) cAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCa < 2:680766/149‑1 (MQ=255) gTTCGCGCAGGTTATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATc > 2:2140067/1‑149 (MQ=255) gTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATc < 1:2858545/149‑1 (MQ=255) cgcgCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGc < 2:4426648/149‑1 (MQ=255) cgcgCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGc < 2:4682546/149‑1 (MQ=255) cAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGt > 2:1882786/1‑149 (MQ=255) cAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGt < 1:1082659/149‑1 (MQ=255) gTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTtgt < 2:2775440/149‑1 (MQ=255) aaTTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTTgtgt > 1:3843537/1‑149 (MQ=255) | AGCAGGACGTGGCGGGTGATATCGGCAGTGACGTTCGGGTTGCCGTCGCGGTCGCCGCCCATCCACGAAGTAAAACGGACCGGAACAAATTCGACGGGCAGTTTGTAGCCGAGGTTCTCTTCCAGTTGTTCGTTCAGTTCGCGCAGGTAATTTGGTACGCCTTGCCACAGGCTGTTTTCCACTACGGCAAAGCCCCATTTGGCTTCATCTACCGGGCTTGGACGCAGCTTACGGATTTCATCGGTATGCCATGACTGGGCGATCAACTGGCGCAGGCGACGCATCAGCTGGTTGTGT > CP009273/4142221‑4142517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |