| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,208,920 | C→A | 7.7% | R133S (CGT→AGT) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,208,920 | 0 | C | A | 7.7% | 807.1 / 18.1 | 254 | R133S (CGT→AGT) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (103/119); new base A (27/3); total (132/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.32e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 258 total aligned reads displayed.
AGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGG > CP009273/4208772‑4209067 | agagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTc > 2:704848/1‑149 (MQ=255) gagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCg < 2:3876082/149‑1 (MQ=255) gagCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCTCTCAGCCAGAGCGCCGCTTTCg > 1:719979/1‑149 (MQ=255) agCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCGCTCACCCCGAGCGCCGCGTTCGt > 1:3390986/1‑149 (MQ=255) gCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTTTATTTTTGTATCATCCAGATCGCCGCGTTAGtt > 1:79645/1‑148 (MQ=255) aTTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCTCTCAGCCAGAGCGCCGCGTTCGTAcc > 1:206159/1‑149 (MQ=255) aTTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCGTTGTATCGTTAGCGCTCAGCCAGAGCGCCGCGTTCGTAcc > 2:2349452/1‑149 (MQ=255) ttACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCa < 1:2246287/149‑1 (MQ=255) cacCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCCGAGCGCCGCTTTCGTACCCTTc > 2:3568129/1‑149 (MQ=255) cacCCGGCTGTTGCCGGATGACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTc < 2:3309669/149‑1 (MQ=255) cacCCGGCTGGTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTc < 2:1040021/149‑1 (MQ=255) acCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTcc < 2:3224419/149‑1 (MQ=255) acCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTcc < 2:739105/149‑1 (MQ=255) ccGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTcccc < 1:430265/149‑1 (MQ=255) ggCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTTGCTCTCAGCCCGAGCGCCGCGTTAGTTACAATCcccgc > 2:3912717/1‑149 (MQ=255) ggCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAATAcccgc > 2:3177392/1‑149 (MQ=255) gCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATGTTTATCTCTCAGCCAGAGCGCCGCTTTAGTACCATTCcccccc > 1:3066856/1‑149 (MQ=255) gCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCcccgcc > 2:2576574/1‑149 (MQ=255) cTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCcccgccc < 1:3001023/149‑1 (MQ=255) cTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCcccgccc < 1:354409/149‑1 (MQ=255) gTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCccgcccgc < 2:3354887/149‑1 (MQ=255) gCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTATGGATCAGCCAGAGCGCCGCGTTAGTTACATTACCCGCCCGCggg > 1:4420351/1‑149 (MQ=255) ccGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGc < 2:926523/149‑1 (MQ=255) aTTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGaaa < 2:849087/149‑1 (MQ=255) aCCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAc < 2:1909400/149‑1 (MQ=255) ccGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTATCTCTCAGCCACAGCGCCGCGTTAGTACCAATCCCCCCCCCCAGGCGCAACAC‑tt > 1:4445072/1‑149 (MQ=255) gcgcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTAGTACCATTCCCCGCCCGCTGGCGAAAGAC‑ATTc > 2:4662326/1‑149 (MQ=255) gcTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCAc < 2:1398881/149‑1 (MQ=255) tCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAACCATCCCCGCCCGCTGGCGAAAGAC‑TTTCAcccc > 2:944443/1‑149 (MQ=255) agaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCGCGCTTACTCCCGAGCGGCTTTTTTTCATTATCTCTCCTCCAGATCGCCGCTTTAGTTACATTACCCGCCCGCTGGCGAAAGACATTCCAccccct > 1:268941/1‑147 (MQ=255) gaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTTACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTATCTCTAAGCCAGTGCGCCGCTTTCGTACCATTACCCGCCCGCAGGCGAAATAC‑ATTCAcccccaac > 2:2810164/1‑145 (MQ=255) gaTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAATCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCCATc > 2:194190/1‑149 (MQ=255) aTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCa > 2:4077960/1‑149 (MQ=255) aTTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCa > 2:2610555/1‑149 (MQ=255) cGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGc < 2:3764079/149‑1 (MQ=255) cGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTACCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGc < 2:1946937/149‑1 (MQ=255) ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCCTTCCCCCCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCt > 2:3489625/1‑149 (MQ=255) ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCt < 1:1717414/149‑1 (MQ=255) ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTATCTCTAAGCCACAGCGCCGCTTTAGTAACAATACCCCCCCGCAGGCGAAAGAA‑ATTAAACCCCATCACGGCt > 1:1940956/1‑149 (MQ=255) ggAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCAACGCTCGCTTACTACCGAGCGGCTTTTTTTCTTTATATCTCAGCCAGAGCGCCGCTTTCGTACAAGTCCCCGCCCGCTTGCGAAAGAC‑TTTCACCCCGATCACGGCt > 2:3018888/1‑149 (MQ=255) gCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGaa < 1:2343500/149‑1 (MQ=255) gCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAA‑TTTCACCCCGATCACGGCggggca > 2:3268434/1‑147 (MQ=255) ttttttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑GTTCACCCCGATCACGGCTGGGAAtc > 2:221037/1‑149 (MQ=255) ttAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTa < 2:3080761/149‑1 (MQ=255) tAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTAc < 1:1626106/149‑1 (MQ=255) aaCTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTTTCTTTAGCTCTCATCCAGAGCGCCGCTTTCGTACCAATACCCCCCCCCAGGCGCAAGAC‑TTTAACCCCCAACACCGCTGGGCAactcaaat > 2:3962262/1‑145 (MQ=255) aCTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATATCTAcag > 2:3274624/1‑147 (MQ=255) aCTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCGTTAGCTCTCAGCCAGAGCGCCGCTTTAGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCAACCCGAACACGGCTGGGACTATCTAcag > 2:496171/1‑147 (MQ=255) tACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGt < 1:3755322/149‑1 (MQ=255) aCTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTGAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTCCTGATGCGCGtt < 2:1171720/149‑1 (MQ=255) cTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTa < 1:1096096/149‑1 (MQ=255) cGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATATTTATCTATCAGCCAGAGCGCCGCTTTCGTACCATTACCCCCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAg > 1:1031245/1‑149 (MQ=255) gTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCg > 2:3989310/1‑149 (MQ=255) ttATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGCGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGGC‑GTTCACCCCGAACACGGCGGGGCATCTCGACTGATGCGCGTTCTCCGCGa > 2:1728508/1‑149 (MQ=255) gACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTAcc < 1:3387606/149‑1 (MQ=255) gACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCAGGCGAAAGAC‑TTTCACCCCCATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCAAcc > 1:1460695/1‑149 (MQ=255) caccGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGct < 2:2503670/149‑1 (MQ=255) caccGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAACATTCCCCGCCCGCTGGCGAAAGAC‑ATTCACCCCGATCACGGCTGGGACTCTCTACTGATGCGCGTTATCAGCGACCTACCGct > 2:1272831/1‑149 (MQ=255) cgctcgctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTAACAATCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGAACACGGCTGGGAATCTCTACAGATGCGCGTTATAAGCGACCAACCGctgcg > 1:1910608/1‑149 (MQ=255) ctcgctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcc < 2:4496379/149‑1 (MQ=255) ctcgctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcc > 2:1456211/1‑149 (MQ=255) ctcgctTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTAGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcc < 2:2122644/149‑1 (MQ=255) ctTACTCCCGAGCGGCTTTTTATCTTTAGCTCACAGCCAGAGCGCCGCTTTAGTACCAATCCCCCCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATTCGCGTTATCAGCGACCAACCGctgcgccagcg > 1:4262174/1‑149 (MQ=255) ttACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcctgcgc < 2:501556/149‑1 (MQ=255) ttACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGctgcgcctgcgc < 1:3944053/149‑1 (MQ=255) tACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCt < 2:1675552/149‑1 (MQ=255) cccGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGTC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCa > 2:1114121/1‑149 (MQ=255) gAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGaa < 2:762785/149‑1 (MQ=255) aGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAAt < 1:4025390/149‑1 (MQ=255) gCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAATACCCCCCCCCAGGCGAAAGAC‑TTTAACCCCCAAAACGGCTGGGAAACTCTACAGATTCGCGTTATAAGCCACCAACCCCAGCGCCAGCGCTGGCAGaaaa > 1:9282/1‑147 (MQ=255) ggCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATaaa < 2:3744341/149‑1 (MQ=255) cTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAg > 1:1401253/1‑149 (MQ=255) tttttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGc < 1:2892219/149‑1 (MQ=255) ttttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGcc < 2:4288091/149‑1 (MQ=255) tttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCg < 2:3390864/149‑1 (MQ=255) ttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGt < 1:3839171/149‑1 (MQ=255) ttATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGt < 1:1168739/149‑1 (MQ=255) aTCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGa > 1:4677612/1‑149 (MQ=255) aTCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCAGTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGa < 1:2457748/149‑1 (MQ=255) tttAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACAt > 1:539659/1‑149 (MQ=255) tAGCTCTCAGCCAGAGCGCCGCTTTAGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATcc > 2:2045123/1‑149 (MQ=255) aGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCca < 2:2013006/149‑1 (MQ=255) gCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCcat > 2:2267771/1‑149 (MQ=255) gCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTCACATCcat > 2:3163526/1‑149 (MQ=255) gCTCTCAGCCAGAGCGCCGCTTTAGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCcat > 2:422086/1‑149 (MQ=255) gCTCTCAGCCAGAGCGCCGCTTTAGTACCATACCCCGCCCCCAGGCCAAACAA‑TTTAACCCCGCTAACCGCAGGGAAACACTACAGATGCGCGTTATCATCGACCAACCGCTGCGCCAGCGCTGGCAGAAAAAAACCCGAGACAACcaa > 1:3124061/1‑148 (MQ=255) aGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCcattacatt > 2:617643/1‑149 (MQ=255) gCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCcattacatta < 2:1860516/149‑1 (MQ=255) ccAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACattat < 1:1236090/149‑1 (MQ=255) agagCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGTGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTc > 1:1604479/1‑149 (MQ=255) agagCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACattatta > 1:2009046/1‑148 (MQ=255) agagCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCGGGCAGAATAAAAGCCGTGACATCCATTACATTATTc > 1:4324883/1‑149 (MQ=255) gagCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCg > 2:1014364/1‑149 (MQ=255) gagCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCg > 2:4405686/1‑149 (MQ=255) ccgcTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATc > 2:2650452/1‑149 (MQ=255) cgcTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCt < 2:3421818/149‑1 (MQ=255) cgcTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCt < 2:3683163/149‑1 (MQ=255) gcTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTg < 2:4549672/149‑1 (MQ=255) cTTTCGTACCAGTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGa < 1:2140079/149‑1 (MQ=255) tCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACgg < 1:16382/149‑1 (MQ=255) | AGAGCATTACACCCGGCTGTTGCCGGATTACCCGCGCTTCGAGATTGCGGAGAGCTTTTTTAACTCCGTGTACTGTCGGTTATTTGACCACCGCTCGCTTACTCCCGAGCGGCTTTTTATCTTTAGCTCTCAGCCAGAGCGCCGCTTTCGTACCATTCCCCGCCCGCTGGCGAAAGAC‑TTTCACCCCGATCACGGCTGGGAATCTCTACTGATGCGCGTTATCAGCGACCTACCGCTGCGCCTGCGCTGGCAGAATAAAAGCCGTGACATCCATTACATTATTCGCCATCTGACGG > CP009273/4208772‑4209067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |