| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,273,158 | A→T | 14.3% | intergenic (‑155/+23) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,273,158 | 0 | A | T | 14.3% | 704.8 / 83.5 | 257 | intergenic (‑155/+23) | yjcF/actP | pentapeptide repeats protein/acetate transporter |
| Reads supporting (aligned to +/- strand): ref base A (115/104); new base T (27/10); total (143/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.11e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 260 total aligned reads displayed.
CCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATGCCGAG > CP009273/4273011‑4273306 | ttATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTgac < 1:4071631/149‑1 (MQ=255) ttAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCgg < 2:375628/149‑1 (MQ=255) ttAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCgg > 2:4275826/1‑149 (MQ=255) ttAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCgg > 2:1520882/1‑149 (MQ=255) tAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCggg > 1:3153025/1‑149 (MQ=255) aagaaagaAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGGAg > 1:3403429/1‑149 (MQ=255) aagaaagaAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAg > 1:4127548/1‑149 (MQ=255) aagaaagaAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAg > 1:4042048/1‑149 (MQ=255) agaaagaaAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGCAgg > 1:4550736/1‑149 (MQ=255) agaaagaaAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAgg < 1:4597295/149‑1 (MQ=255) agaaagaaAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAgg < 1:1591091/149‑1 (MQ=255) agaaagaaAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAgg > 1:4290847/1‑149 (MQ=255) gaaagaaaAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAggg > 1:1881436/1‑149 (MQ=255) aaaaGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGGAGGGgagag > 2:3924210/1‑149 (MQ=255) aaaaGGCATATTCTCTGCATTATCATTTTCAACGACTGTCAAAAATCGCTAATATTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGTGAGAGGAAGAGTATACCCCCGTCAGTCG‑ACCGGCGCAGGGgagcg > 2:857747/1‑147 (MQ=255) aaaGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTCATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGAATTCCCCGCTCAGAAG‑CACGGGGACACGgagagc > 1:2566661/1‑148 (MQ=255) aaaGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGAGGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGgagaga < 1:113165/149‑1 (MQ=255) aaGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGAAGGGGAGAGAt < 1:310433/149‑1 (MQ=255) aaGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGAt < 2:2343373/149‑1 (MQ=255) aaGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGAt < 2:4336925/149‑1 (MQ=255) gCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCCGGCTGACG‑ACCCGGGCAGGGGCGAGAttca > 1:1272777/1‑147 (MQ=255) gCATATTCTCTGAATTATAATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTaa < 1:3036753/149‑1 (MQ=255) cATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTCTGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTGTGACG‑ACCGGGGCCGGGGAGGGAGTAAt > 2:2642406/1‑149 (MQ=255) tatTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGACGGGGGGAGCTTAATgc > 1:2362484/1‑149 (MQ=255) atTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCCGTCAGACG‑ACCGGGGCCGGGGAGAGATTAATgcg > 1:799691/1‑149 (MQ=255) atTCTCTGCATTATCATTTTCGACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATgcg < 2:3513065/149‑1 (MQ=255) gCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGcc > 2:1688725/1‑149 (MQ=255) cATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCt < 2:637234/149‑1 (MQ=255) taacagtttCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGCTGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCTCGCGGCCTTGc < 2:1642521/143‑1 (MQ=255) cATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGAAGGGGCGAGATTAATGCGCGCGGCCTTTCTCa > 1:3830262/1‑149 (MQ=255) ttttCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAAc < 1:1679613/149‑1 (MQ=255) tCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGcc < 2:1431575/149‑1 (MQ=255) tACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGCAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCac > 1:143716/1‑148 (MQ=255) aCGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCaaa < 2:4642227/149‑1 (MQ=255) cGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAg > 1:2285819/1‑149 (MQ=255) cTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCCGTCTGACGAACCGGGGATGGGG‑GAGCTTAATTAGCGCGGCCATGCTCAACGCCCAACCCg > 1:462184/1‑149 (MQ=255) tCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGACGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTc > 2:1884295/1‑149 (MQ=255) aaaaTCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTgg < 1:887486/149‑1 (MQ=255) tCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGc > 2:4448391/1‑149 (MQ=255) gCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGGAGGGGCGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCgg > 2:2858374/1‑149 (MQ=255) cTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGa < 2:2550159/149‑1 (MQ=255) tttttAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCCTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAAc > 2:300835/1‑149 (MQ=255) ttttAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACt < 2:1122641/149‑1 (MQ=255) tttAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTg > 1:2847560/1‑149 (MQ=255) aaTGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTgcgc > 2:3561060/1‑149 (MQ=255) aaTGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCATGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTgcgc > 2:1084264/1‑149 (MQ=255) tGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTgcgcgc < 1:2122768/149‑1 (MQ=255) tGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCGTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTgcgcgc < 1:948470/149‑1 (MQ=255) ttttATTTTTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGTGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGa < 1:424183/148‑1 (MQ=255) gTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGa < 1:3490798/149‑1 (MQ=255) gTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGa < 2:4228322/149‑1 (MQ=255) gTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTAGTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGa < 2:1894297/149‑1 (MQ=255) tttATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGaa < 2:3877560/149‑1 (MQ=255) ttATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAAAGCCAAAGCCGGTCTGGGATCGGATAAACTGCGCGCGGAAc > 2:881745/1‑149 (MQ=255) ttATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCCGTCAGACC‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCATTCTCAACGCCAAAGACGGTCTGGGAGCGGATAAACATCGCGCGGAAc > 1:2044344/1‑149 (MQ=255) aTTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAg < 1:83321/149‑1 (MQ=255) aTTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAg < 1:334582/149‑1 (MQ=255) tttGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGt < 2:1929535/149‑1 (MQ=255) gTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCCGTCAGACG‑ACCCGGGAAGGGGAGAGATTAATTCGCGCGGCCGTGCTAAACGCCAAAGCCGGTCTGGGAGCGGCTAAAATGCGCGCGGAACAGTtca > 1:2053324/1‑149 (MQ=255) tttAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCCGGGAAGGGGAGAGATTAATGCGCGCGGCCATTCTCAACGCCAAAGACGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTtcac > 2:1364323/1‑149 (MQ=255) atatTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTAAGACG‑AACGGGGAAGGGGAGAGATTAATTCGCGCGGCCTTGCTCAAACCCAAAGCCCGTCTGGGAGCGGATAAACAGCGCGCGGAACAGTtcacgctc > 1:3675595/1‑149 (MQ=255) tattatGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTtcacgctca < 2:746425/149‑1 (MQ=255) tattatGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCCGTCACACG‑ACCCGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAAAGCCAAAGCCGGTCTGGGGGCGGATAAACTGAGCGCGGAACACTtcaccctca > 1:3913050/1‑149 (MQ=255) tGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGCAGGGGAGAGATTAATTCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAAATGCGCGCGGAACAGTTCACGCTCAcgcgc > 1:3251799/1‑149 (MQ=255) tGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCAcgcgc > 1:1830870/1‑149 (MQ=255) tGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCCCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCAcgcgc > 2:4584179/1‑149 (MQ=255) gAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGcc < 2:887946/149‑1 (MQ=255) aaGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCCGTCAGACG‑ACCGGGGCAGGGGAGAGATTAATGCGCGCGGCCGTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACAGCGCGCGGAACAGTTCACGCTCACGCGCGCCATc > 2:2778260/1‑149 (MQ=255) gTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGc < 2:3153018/149‑1 (MQ=255) gTGATGCATTTGGGAGAGGAAGAGTAGTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGc < 2:1266163/149‑1 (MQ=255) aTGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGa > 2:4154732/1‑149 (MQ=255) tGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAg < 2:2140384/149‑1 (MQ=255) tGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCGTGCTCAACGCCCAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGGTCACGCTCACGCGCGCCTTCCGCGGAg > 2:4032952/1‑149 (MQ=255) gCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGt < 2:951146/149‑1 (MQ=255) gCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGt < 1:3609035/149‑1 (MQ=255) tttGGGAGAGGACGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTAt > 2:3054412/1‑149 (MQ=255) gggAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCgg < 1:4482870/149‑1 (MQ=255) gggAGAGGAAGAGTATTCCCCCGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCATCCGCTGAGTTATCgg > 1:2959097/1‑149 (MQ=255) ggAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGt < 1:2695827/149‑1 (MQ=255) gagaGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGtt < 1:1016496/149‑1 (MQ=255) gagGAAGAGTATTCCCCGGTCTTTCG‑ACCGGGGTAGGGGTGAGATTAATTCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAAATGCGCGCGGAACAGTTCACGCTCACGCGCGCCTGCCGCTGAGTTATAGGTTGc > 2:2743215/1‑149 (MQ=255) agGAAGAGTATTCCCCGGTCTGACG‑ACCGGGGAAGGGGAGATATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTAACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGcc > 2:1161998/1‑149 (MQ=255) agGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGc > 1:4258035/1‑133 (MQ=255) gAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCga > 2:1452818/1‑149 (MQ=255) gTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGCTAAACTGCGCGCGGCACAGTTCCCGCTCCCGCGCGCCTTCCGCTGCGGTATCGGTTGCCGagaaga > 2:3273776/1‑149 (MQ=255) gTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGagaaga < 2:2285819/149‑1 (MQ=255) gTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTGATCGGTTGCCGagaaga > 2:3273950/1‑149 (MQ=255) tATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAgaagaa < 1:2484878/149‑1 (MQ=255) aTTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAAc > 2:4084808/1‑149 (MQ=255) aTTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAAc < 2:544303/149‑1 (MQ=255) ttCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAAcc < 1:417364/149‑1 (MQ=255) cccGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGa < 1:200387/149‑1 (MQ=255) cccGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGa > 1:702720/1‑149 (MQ=255) ccGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGAt < 2:1989803/149‑1 (MQ=255) cGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATg > 1:1688317/1‑149 (MQ=255) ggTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATGc < 2:798761/149‑1 (MQ=255) tCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATGCCg < 1:4664229/149‑1 (MQ=255) cAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATGCCGa < 1:2466078/149‑1 (MQ=255) cAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATGCCGa > 2:674307/1‑149 (MQ=255) aGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATGCCGAg < 1:4355867/149‑1 (MQ=255) | CCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCAGACG‑ACCGGGGAAGGGGAGAGATTAATGCGCGCGGCCTTGCTCAACGCCAAAGCCGGTCTGGGAGCGGATAAACTGCGCGCGGAACAGTTCACGCTCACGCGCGCCTTCCGCTGAGTTATCGGTTGCCGAGAAGAACCAGATGCCGAG > CP009273/4273011‑4273306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |