BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	776825 =	188 (0.630)	23 (0.080) +G	3/274	NT	9.5%	noncoding (1/76 nt)	lysZ	tRNA‑Lys
*	?	CP009273	= 2514487	255 (0.860)	23 (0.080) +G	3/274	NT	9.5%	noncoding (215/1345 nt)	IS186	repeat region

Only 100 of 221 total aligned reads displayed.

CAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGAC  >  CP009273/776677‑776970

 aGTTTTAACATCAAACTCAGATGTTAGGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATgg                                                                                                                                                  <  1:5213238/149‑1 (MQ=255)

 aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTTGCCCCGAGTAAAAAACATTCAGGTAACAACCGGATgg                                                                                                                                                  >  2:274459/1‑149 (MQ=21)

   ttttACCATAACACTCAGATGTTAAGCGTTAAGTATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGt                                                                                                                                                <  1:2772476/149‑1 (MQ=25)

       accATCCAACTCAGCTGTTAAGCGTGAAGGCTAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGtt                                                                                                                                            <  1:3442932/147‑1 (MQ=255)

       aaCATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGtt                                                                                                                                            >  2:4282948/1‑149 (MQ=255)

        aCATCAAACTCAGATGTTAAGCGTGAAGGATAACTTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTa                                                                                                                                           <  1:2079570/149‑1 (MQ=255)

          aTCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGACAACCGCCACGACCCACCAAACAAACAGATTGGCCCCCAGAAAAAAACATACAGGTAACACCCGTAAGGGACGGTAGc                                                                                                                                         >  1:1587253/1‑149 (MQ=18)

           tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCt                                                                                                                                        >  1:1537637/1‑149 (MQ=255)

           tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCt                                                                                                                                        >  1:4155354/1‑149 (MQ=255)

           tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCt                                                                                                                                        >  2:1636609/1‑149 (MQ=255)

                cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGtt                                                                                                                                   <  1:3035286/149‑1 (MQ=255)

                 cccgATGTTAACCGCGAAGGATACCGTGGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTg                                                                                                                                  <  1:2848933/146‑1 (MQ=37)

                  cAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTgg                                                                                                                                 >  1:794169/1‑149 (MQ=255)

                  cAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATATTAAAGATAGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTgg                                                                                                                                 >  1:2543264/1‑149 (MQ=255)

                   aGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAAACTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGt                                                                                                                                >  2:3448995/1‑149 (MQ=255)

                    gttGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                                                                                                               <  1:2897731/147‑1 (MQ=255)

                    gaggTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                                                                                                               <  1:3151044/146‑1 (MQ=255)

                    gATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                                                                                                               <  1:4303051/149‑1 (MQ=255)

                    gATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                                                                                                               >  2:2974246/1‑149 (MQ=255)

                       gTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTagag                                                                                                                            <  2:2845314/149‑1 (MQ=255)

                          aaGCGTTAAGTATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAg                                                                                                                         <  2:4033804/149‑1 (MQ=255)

                              gTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGa                                                                                                                     >  2:1200679/1‑149 (MQ=255)

                               tGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAc                                                                                                                    >  1:5178713/1‑149 (MQ=255)

                               tGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAc                                                                                                                    >  1:4876289/1‑149 (MQ=255)

                               tGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAc                                                                                                                    >  2:227934/1‑149 (MQ=255)

                               tGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAc                                                                                                                    <  1:169072/149‑1 (MQ=255)

                                 acgtaTAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAACATCGTTCAGGTAACACCCGTGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACtt                                                                                                                  <  2:1335785/145‑1 (MQ=255)

                                  aGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACttt                                                                                                                 <  1:2059560/149‑1 (MQ=255)

                                   gtaTAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACtttt                                                                                                                <  1:1022306/147‑1 (MQ=255)

                                   ggttAACGTGGCGCCAGCCACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACtttt                                                                                                                <  1:4491223/146‑1 (MQ=255)

                                     aTAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTaa                                                                                                              <  1:3990443/149‑1 (MQ=255)

                                      tAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAAt                                                                                                             >  1:2809487/1‑149 (MQ=255)

                                        aCGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCa                                                                                                           >  2:5012168/1‑149 (MQ=255)

                                        aCGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGAGTGGCCGCGAGGAAAAATCTTTCAGGTAACACCCGTATGGGTCGTGAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCa                                                                                                           >  2:3063255/1‑149 (MQ=255)

                                         cGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCaa                                                                                                          <  1:1883882/149‑1 (MQ=255)

                                                  aGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATAGGCCCCGAGTAAAATTCTTTCAGGAAACACGCGTATGGGTCGTTTGCTCAGTTGGTAGAGCAGTTGCCTTTTACTCAATTGGTCGCa                                                                                                 >  2:1427983/1‑149 (MQ=37)

                                                   gCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAg                                                                                                <  1:806961/149‑1 (MQ=255)

                                                     aaCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGt                                                                                              <  1:3357808/149‑1 (MQ=255)

                                                      aCGGCCCGTAGGGCGTGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAACGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGtt                                                                                             <  2:390234/149‑1 (MQ=255)

                                                          cccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGaa                                                                                         <  1:198636/149‑1 (MQ=255)

                                                          cccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGaa                                                                                         >  1:3566204/1‑149 (MQ=255)

                                                            cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATc                                                                                       <  2:5067444/149‑1 (MQ=255)

                                                            cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATc                                                                                       >  1:2045979/1‑149 (MQ=255)

                                                             gTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATcc                                                                                      >  2:77809/1‑149 (MQ=255)

                                                             gTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATcc                                                                                      >  1:693035/1‑149 (MQ=255)

                                                             gTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATcc                                                                                      >  1:2926492/1‑149 (MQ=255)

                                                               aGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTg                                                                                    >  1:1620842/1‑149 (MQ=255)

                                                               aGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTg                                                                                    >  1:3547099/1‑149 (MQ=255)

                                                               aGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACGTTTAATCAATTGGTCGCAGGTTCGAATCCTg                                                                                    >  1:4856985/1‑149 (MQ=255)

                                                                      ggtgattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGAcc                                                                             <  1:2982077‑M1/71‑1 (MQ=255)

                                                                         gattagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccac                                                                          <  1:1380848‑M1/74‑1 (MQ=255)

                                                                         aagcgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccac                                                                          >  1:649360/1‑149 (MQ=255)

                                                                          attagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccacc                                                                         <  2:3190257‑M1/75‑1 (MQ=255)

                                                                           ttagctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccacca                                                                        <  2:413563‑M1/76‑1 (MQ=255)

                                                                            cgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACCCCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCaa                                                                       <  1:483807/149‑1 (MQ=255)

                                                                             gaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAAt                                                                      >  2:2132515/1‑149 (MQ=255)

                                                                             agctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTgg                                                                                                                                 <  1:4715148‑M1/19‑1 (MQ=255)

                                                                             agctcagctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTgg                                                                                                                                 >  2:4715148‑M1/72‑90 (MQ=255)

                                                                                   gctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAg                                                                                                                                     >  1:1737531‑M1/66‑80 (MQ=255)

                                                                                   gctgggagagcacctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAg                                                                                                                                     <  2:1737531‑M1/15‑1 (MQ=255)

                                                                                     cTGCACGACCCCCCAATCTTAAAGATTGGCCCCGAGTAAACATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggt                                                              <  1:4775654/149‑1 (MQ=255)

                                                                                      tGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAACATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtg                                                             <  2:1138425/149‑1 (MQ=255)

                                                                                      tGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGGCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCCATTGGGCGCAGGTTCGAATCCGGCACGACCCCCCCATGTAAAggtg                                                             >  2:696459/1‑149 (MQ=25)

                                                                                       gCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAAGTTAAAggtgg                                                            >  2:4352226/1‑149 (MQ=255)

                                                                                       gCACGACCCACCAAACATAAAGACTGGCCCCGAGTATAAATCTTTCAGGTAACACCCGTTTTGTTCTTTAGCTATGTTGCTAGATCAGATGACTCTAATTAATTTGGACGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtgg                                                            <  2:1258360/149‑1 (MQ=21)

                                                                                        cACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt                                                           <  1:4426661/149‑1 (MQ=255)

                                                                                             cccACCAATCTTAAAGATTGGCCCCGAGTAAAGATCTGTCAGGTAACACCCTTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTg                                                      <  1:633414/149‑1 (MQ=255)

                                                                                              ccaccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGTGTCGTTAGATAAGGTTGTATAGAAGTTTACTTTTAATCAAATTTTCGCAGGTTATAATAAAGCACGACCCACCAATTTAAAGGTGGTTACTgg                                                     >  1:2642001/1‑149 (MQ=255)

                                                                                               cctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGt                                                    <  2:4562051‑M1/96‑1 (MQ=255)

                                                                                                ctcccttacaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCACTTTAAAGCTcgttacgggag                                                   <  2:633531‑M1/97‑6 (MQ=255)

                                                                                                     tCTTAATGATTGGCCCCGAGTAAATATCTTTCAGGTAACACCCGTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGaa                                              <  1:321198/149‑1 (MQ=255)

                                                                                                      cTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAAc                                             >  2:2271803/1‑149 (MQ=255)

                                                                                                       ttAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACg                                            >  1:2431118/1‑149 (MQ=255)

                                                                                                       acaaggagggggtcggcggttcgatcccgtcatcacccaccactcGGGTCGTTAGCt                                                                                                                                        >  2:280130‑M1/46‑57 (MQ=255)

                                                                                                          aaGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCTATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTAATGGTAGAGAACGTGa                                         <  2:3962152/149‑1 (MQ=255)

                                                                                                          aaGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAGGTGGGTACAGGACGAGACCGtaa                                         >  1:2118569/1‑147 (MQ=21)

                                                                                                               tGGCCCCGAGTAAATATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGAt                                    <  2:4845799/149‑1 (MQ=255)

                                                                                                               gggCCCGGCGTATATATCTTTCATGTAACAACCTTTAGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGAt                                    <  2:2136078/148‑1 (MQ=18)

                                                                                                                ggCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATa                                   <  2:4243878/149‑1 (MQ=255)

                                                                                                                        gTAAATATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCg                           <  2:3358969/149‑1 (MQ=255)

                                                                                                                        gTAAAAATCTTTCATGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCg                           <  2:5123877/149‑1 (MQ=255)

                                                                                                                        gTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCg                           >  1:4042371/1‑149 (MQ=255)

                                                                                                                         tAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGt                          <  2:3743421/149‑1 (MQ=255)

                                                                                                                         gttcgatcccgtcatcacccaccactcGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCa                                                                                  >  1:569394‑M1/28‑93 (MQ=255)

                                                                                                                          aaaaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGtt                         <  2:2469084/149‑1 (MQ=255)

                                                                                                                           aaaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTa                        >  1:2466904/1‑149 (MQ=255)

                                                                                                                             aaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAATGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGc                      >  1:5098440/1‑149 (MQ=255)

                                                                                                                             aaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGAAGCTGACTAGTGGCGAACGTGTAGGATCACGTTGCGTAAga                      >  2:1890113/1‑148 (MQ=18)

                                                                                                                               tCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCaa                    <  2:4921747/149‑1 (MQ=255)

                                                                                                                                cTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTAAAGGTAGATAACGTTAAGGATAACGTTGCGTTAGCAAc                   >  1:560339/1‑149 (MQ=255)

                                                                                                                                 tttCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAATGTGGTGACTGGTAGAGCAAGTTAAGGATAACGTTGCGTTAGCAACg                  >  1:1696229/1‑149 (MQ=21)

                                                                                                                                  ttCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACgg                 <  1:227934/149‑1 (MQ=255)

                                                                                                                                     aGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGTGCAGTTGACTTTTAATAATTTGGTCGCTGGTTCGAATCCTGCACGACCCACAAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGccc              <  1:4666865/149‑1 (MQ=25)

                                                                                                                                      ggTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGGTGCGTTAGCAACGGCCCg             >  2:43763/1‑149 (MQ=255)

                                                                                                                                          acacCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGTTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAgg         >  1:285536/1‑149 (MQ=255)

                                                                                                                                          acacCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATCACGTTGCGTTAGCAACGGCCCGAAgg         >  2:2037258/1‑149 (MQ=255)

                                                                                                                                           cacCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAATGTGGTTACTGGTAGAGAACTTTAAGGATAACCTTGCGTTAGAAAAGGCCAGAAggg        >  2:2593614/1‑149 (MQ=21)

                                                                                                                                               cGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATAAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgag    >  1:1012201/1‑149 (MQ=255)

                                                                                                                                                ttttGGGTCGTTAGCTCAGTTGTTAGAGAAGTTGAATTTTAATAATTTGGTCGCAGTTTCTAATCCTGCACGACCCACAAATTTAAAGGTGGTTACTGGTAGATAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCgaga   <  1:4562051/146‑1 (MQ=18)

                                                                                                                                                 tttGGGTCGTTTGCTCTGTTGGTAGTGCTGTTGACTTTTAATCATTGGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGACCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGAc  <  1:4282948/147‑1 (MQ=18)

CAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGCGAGAC  >  CP009273/776677‑776970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.