| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 378046 | NA (NA) | 162 (0.540) | 101/276 | NT | 60.4% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| ? | CP009273 | 386399 = | 106 (0.360) | pseudogene (693/1458 nt) | yaiT | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein | |||||
Only 100 of 421 total aligned reads displayed.
TAACCAAGCACACAAATGAGACATTTGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATG > CP009273/386251‑386547 | caaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccac > 2:501827‑M2/149‑149 (MQ=255) agaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGaa < 2:2462464‑M2/4‑1 (MQ=255) gaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAAt > 1:3223853‑M2/145‑149 (MQ=255) aaGCACACAAATGAGACATTTGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATt < 2:320206‑M2/149‑2 (MQ=255) aGCACACAAATGAGACATTTGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATta > 1:1564533‑M2/1‑147 (MQ=255) cttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCa < 2:4009864‑M2/9‑1 (MQ=255) cacacaAATGAGACATTTGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtaga > 1:523768‑M2/1‑145 (MQ=255) ttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCAt < 1:1431707‑M2/10‑1 (MQ=255) ttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatatgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCAt > 1:2688508‑M2/140‑149 (MQ=255) aaaTGAGACATTTGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggc > 1:5103982‑M2/1‑140 (MQ=255) aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgtgttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTgg < 2:3232747‑M2/16‑1 (MQ=255) gcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGa < 2:2674012‑M2/18‑1 (MQ=255) gttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATa > 1:358411‑M2/130‑149 (MQ=255) gttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATa > 1:2983564‑M2/130‑149 (MQ=255) aCATTTGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATaa < 2:4419944/149‑1 (MQ=255) tttGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatc < 2:4788098‑M2/149‑20 (MQ=255) gagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACaa > 1:4656321‑M2/126‑149 (MQ=255) gagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACaa > 2:1809726‑M2/126‑149 (MQ=255) agcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAat < 1:1862056‑M2/25‑1 (MQ=255) gATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctcc < 2:2002274‑M2/149‑23 (MQ=255) tataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATAtctc < 1:3083843‑M2/30‑1 (MQ=255) tataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATAtctc < 1:459126‑M2/30‑1 (MQ=255) aCAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccaga < 2:3650672‑M2/149‑26 (MQ=255) aacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatatgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGACTCTCATACTTGGGATAACAATATCTCTGt > 2:4106387‑M2/117‑149 (MQ=255) acgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTa > 1:1790561‑M2/116‑149 (MQ=255) aatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTaaaa > 2:1704857‑M2/113‑149 (MQ=255) aaGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTaaaa < 1:2473409/149‑1 (MQ=255) aGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaat < 1:3652574‑M2/149‑34 (MQ=255) ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGAt > 2:3483265‑M2/110‑149 (MQ=255) gTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatca > 2:3271146‑M2/1‑112 (MQ=255) ttGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTcc > 1:1506293/1‑149 (MQ=255) atccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTcc > 1:2074514‑M2/107‑149 (MQ=255) gCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcactt > 2:357297‑M2/1‑109 (MQ=255) ccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCcac < 1:1386431‑M2/45‑1 (MQ=255) gTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGt > 2:1663891/1‑149 (MQ=255) aaTCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGAc < 1:2922623/149‑1 (MQ=255) aTCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataag < 1:3274220‑M2/149‑48 (MQ=255) aTCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACt > 1:2762866/1‑149 (MQ=255) tCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagt < 1:4794827‑M2/149‑49 (MQ=255) tCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagt > 2:2239234‑M2/1‑101 (MQ=255) gATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCGGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCggg > 1:2363573/1‑149 (MQ=255) tgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGt > 2:67142‑M2/92‑149 (MQ=255) tGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagt < 1:2313808‑M2/149‑55 (MQ=255) gttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCa < 2:3979996‑M2/61‑1 (MQ=255) aGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt > 1:1311428‑M2/1‑92 (MQ=255) aaGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATGCTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaat > 2:4021609‑M2/1‑89 (MQ=255) gTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATtat < 1:1682579/149‑1 (MQ=255) ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATtata < 2:544956‑M2/68‑1 (MQ=255) aCATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATc > 2:4565508/1‑149 (MQ=255) ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCt < 1:401052‑M2/72‑1 (MQ=255) tCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttt > 2:2881509‑M2/1‑81 (MQ=255) aaTATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttt < 1:473367‑M2/149‑71 (MQ=255) gggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGAt < 2:1313731‑M2/76‑1 (MQ=255) atatTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGAt > 2:209750/1‑149 (MQ=255) tatTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttag < 1:3117065‑M2/149‑73 (MQ=255) tatTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttag < 1:2233722‑M2/149‑73 (MQ=255) tttCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGc > 1:848755/1‑149 (MQ=255) ttCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCa > 1:772165/1‑149 (MQ=255) atctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAAt > 2:3764288‑M2/68‑149 (MQ=255) cAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagt < 2:310383‑M2/149‑79 (MQ=255) aTAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTCATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGGAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACt > 2:3895950/1‑149 (MQ=255) aTAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACt < 2:3521970/149‑1 (MQ=255) tAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcat > 2:2731829‑M2/1‑68 (MQ=255) gcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATg < 1:2181451‑M2/89‑1 (MQ=255) gcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATg > 2:3177231‑M2/61‑149 (MQ=255) agcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGc > 2:3817486‑M2/59‑149 (MQ=255) ccGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCa > 2:1098109/1‑149 (MQ=255) gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGt > 2:1424077‑M2/50‑149 (MQ=255) cAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGt < 1:4456819/149‑1 (MQ=255) cAGGTATTGCATTATCTCAAGGTAATACTTAAAACGAAAACTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGAGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGAAAAACTGGt > 1:3741491/1‑149 (MQ=255) taatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTc > 1:1246364‑M2/49‑149 (MQ=255) aGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTc > 1:2513643/1‑149 (MQ=255) aatgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCa < 1:5024457‑M2/102‑1 (MQ=255) gTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCAc > 2:1633634/1‑149 (MQ=255) tgggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACt < 1:2878740‑M2/104‑1 (MQ=255) tATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACt > 1:100320/1‑149 (MQ=255) gggttaagtgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACtt < 2:1054794‑M2/105‑1 (MQ=255) ttGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg < 1:4110478‑M2/149‑102 (MQ=255) aTTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagacccgatgattgatgtctt < 2:2588198‑M2/149‑106 (MQ=255) ttATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta < 1:3705019‑M2/149‑107 (MQ=255) ttATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta < 1:675655‑M2/149‑107 (MQ=255) ttATCTCAAGGTAATACTTACAAAGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctta > 2:254124‑M2/1‑43 (MQ=255) tgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAAtt < 1:4406429‑M2/113‑1 (MQ=255) tgataacagatgtctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAAtt < 2:2983563‑M2/113‑1 (MQ=255) ctcAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCt < 2:848866/149‑1 (MQ=255) aaGGTAATACTTACAACGAAACCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgg < 1:91905‑M2/149‑114 (MQ=255) tctggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGa < 1:1996367‑M2/125‑1 (MQ=255) ttACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTg > 2:1928178/1‑149 (MQ=255) ggaaatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTg > 1:3378617‑M2/22‑149 (MQ=255) tACAACGAAACCTACACTACAGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGa > 2:5190168/1‑149 (MQ=255) aatataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGAtt < 1:3848934‑M2/131‑1 (MQ=255) tataggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTAt > 2:964226‑M2/17‑149 (MQ=255) cGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATg > 2:340986/1‑149 (MQ=255) aggggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCt > 2:4710414‑M2/14‑149 (MQ=255) aaCCTACACTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtac < 1:491618‑M2/149‑133 (MQ=255) gggcaaatccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGCTTATGCTgg > 2:1536904‑M2/12‑149 (MQ=255) tccaCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGt < 2:3854930‑M2/145‑1 (MQ=255) cTACCGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacagg < 1:4228434‑M2/149‑141 (MQ=255) ccGAATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaa < 2:2338050‑M2/149‑144 (MQ=255) aCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGCTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGAt > 1:4088691‑M2/2‑149 (MQ=255) | TAACCAAGCACACAAATGAGACATTTGATACAAGTGAAGGCGTTGCTGTTAATCTTGATGTAGAAAGTAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATG > CP009273/386251‑386547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |