| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 681,491 | A→C | 8.2% | F212C (TTT→TGT) | gltJ ← | glutamate, aspartate ABC transporter permease subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 681,491 | 0 | A | C | 8.2% | 917.7 / 19.1 | 332 | F212C (TTT→TGT) | gltJ | glutamate, aspartate ABC transporter permease subunit |
| Reads supporting (aligned to +/- strand): ref base A (204/93); new base C (2/33); total (206/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.95e-13 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 345 total aligned reads displayed.
TGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATT > CP009273/681344‑681639 | tGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTaa‑a > 2:3404031/1‑149 (MQ=255) cAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGa < 2:4167362/149‑1 (MQ=255) aTGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGACCTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAC‑ACGACTCCCAGGCATgg > 2:3224945/1‑149 (MQ=255) aTGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATgg > 2:2200253/1‑149 (MQ=255) tGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATggg > 1:4131870/1‑149 (MQ=255) ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGc > 2:1017371/1‑149 (MQ=255) ggAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGc > 2:3774504/1‑149 (MQ=255) aaCTCCAGTCAAACTCGTACTTTATTTGCCCCCCATGTTGCCAGGCAGGCTAACTTTACGTACAACCAGCGTCATAACCAGCATGATAAAAGCGTTAATCAACAAATCCGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTg < 2:815798/149‑1 (MQ=255) aCTCCATTCAAACTCGTACTTTATTTGCCCCCCATGTTGCCTGGCTGGCGACCTTTACGTTCAACCCGCGTCATCACCAGCATGATAAAAGGGTTAATCAACACATCCGCCAGCGTATGGGCGGTAA‑ACGACTCCCAGGCATGGGCTGa < 2:1253099/149‑1 (MQ=255) tCCATTAAAACTCTTAAATTATTTGCCCCCCTTGTTGCCTGGCAGGCGAATTTTAGTTACAACCTGGTGAATCACCAGAATTATAAATGGTTTAACCAACACATACGCCAGCTTAATGGGGTTAA‑ACGACTCCCAGGCATGGGCTGAGt < 2:1040989/149‑1 (MQ=255) ccAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTa > 1:2365805/1‑149 (MQ=255) ccAGTCAAACTCCAACATAAAATGCCCCCAAACTTGCCACGCAGGCGAACAAAACGAACAACCAGCGTCAACACCAGCATCATAAAAGCGATAATCAACACATACGACAGCGTAAAGGCGGTAA‑ACGACTCCCAGGCAAGCGCTGAGTa > 2:1635674/1‑149 (MQ=255) aGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAAt > 2:2806632/1‑149 (MQ=255) gTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATc > 1:958764/1‑149 (MQ=255) gTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATc > 1:356219/1‑149 (MQ=255) aCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCa > 1:4825123/1‑149 (MQ=255) aCTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCa > 2:3642936/1‑149 (MQ=255) tcttaaattattTGCCCCCCATTTTGCCAGGCAGGCGAAATTTACTTTCAACCAGCTTCATCACCAGAATGATAAAAGCTTTAATCAACACATACGCCAGCTTAATGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAAt < 2:4290134/143‑1 (MQ=255) tCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAAt > 2:55241/1‑149 (MQ=255) gTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAAttt > 1:453976/1‑149 (MQ=255) cATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTAcc > 1:2683535/1‑149 (MQ=255) cATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTAcc > 1:3970859/1‑149 (MQ=255) tttggCCCCCCTTGTTGCCTGGCTGGCTAACTTTCCTTTCAACCAGCGTCATCACCCCCATTATAAACGCTTTAATCAACACATACGCCAGCTTATTGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGcc < 2:3629175/145‑1 (MQ=255) tttGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCt > 1:2419397/1‑149 (MQ=255) cccATGTTGCCTGGCAGGCGAACTTTACGTTCAACCAGCGTCACCACCAGCATGATAAACGCGTTAATCAACACATACGCCAGCGTATTGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccgc < 2:1752785/149‑1 (MQ=255) cgtGTTGCCAGGCTGGCGAATTTTACTTACAACCAGCGTCATCACCAGCATGATAAAAGCTTTAATCAACACATCCGCCAGCGTATGGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCa < 2:4489652/147‑1 (MQ=255) aTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat > 1:3088511/1‑149 (MQ=255) aTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat > 1:5073813/1‑149 (MQ=255) aTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat > 2:4827415/1‑149 (MQ=255) ttGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATc > 2:2644452/1‑149 (MQ=255) tGCCAGGCAGGCTAACTTTACGTTCAACCAGCGTCATCACCAGCATTATAAAAGCTTTAATCACCACATCCGCCAGCGTAATGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATcc < 2:1678626/149‑1 (MQ=255) caggctggCTAACTTTACGTAAAACCAGCGTCTTCACCTGCATTATAAAAGCGTTAATCAACACATACGCCTGCTTATTGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc < 2:3156090/149‑1 (MQ=255) caggcaggCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc > 1:3671603/1‑149 (MQ=255) tggccggcTAATTTTCCTTTAAACCCGCTTAACCACCTGAATTATAAAAGCTTTAACCAAAACACCCGCCAGGTTTTTGGGGTTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacca < 1:1909370/148‑1 (MQ=255) ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAg > 2:3507203/1‑149 (MQ=255) gcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGa > 1:1001400/1‑149 (MQ=255) ggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCg > 1:987157/1‑149 (MQ=255) gAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATa > 2:5037900/1‑149 (MQ=255) aCTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGt > 1:831832/1‑149 (MQ=255) tttACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCg > 2:434499/1‑149 (MQ=255) acttaaaaCCAGCTTCACCACCATCTTTATAAAAGGTTTAATAAAAAAATCCCCCAGCTTATTGGCGTAAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAgg < 1:1084688/143‑1 (MQ=255) gTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCg > 1:736909/1‑149 (MQ=255) aaCCAGCGTCATCACCAGCATGATAAAAGCGTTAATAAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATgg < 2:4585916/149‑1 (MQ=255) aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGc > 2:2413986/1‑149 (MQ=255) cAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCgg > 1:4543008/1‑149 (MQ=255) aGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGa < 2:3843819/149‑1 (MQ=255) gCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAg > 2:3894362/1‑149 (MQ=255) gCGTAATCACCATATTTATAAAAGCTTAAACCAACAAATACGCCTGCGTATTGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAg < 2:1403477/149‑1 (MQ=255) gTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtt > 2:664517/1‑149 (MQ=255) tcatcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttt > 1:2064210/1‑149 (MQ=255) tcatcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttt > 1:2827531/1‑149 (MQ=255) tcatcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttt > 1:4684595/1‑149 (MQ=255) catcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtttt > 1:1371366/1‑149 (MQ=255) catcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtttt > 2:1513595/1‑149 (MQ=255) catcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGtttt > 1:3757183/1‑149 (MQ=255) atcaCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGttttt > 2:2918643/1‑149 (MQ=255) aCCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAc > 2:902121/1‑149 (MQ=255) ccAGCTTTATAAACGCTTTAATCAACACAGACGCCCGCGTATGGGCGGTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc < 1:4301891/149‑1 (MQ=255) ccAGCATTATAAAAGCGTTAATCAACACATCCGCCAGCGTATGGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc < 2:2343280/149‑1 (MQ=255) ccAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc > 2:1910514/1‑149 (MQ=255) ccAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc > 2:717908/1‑149 (MQ=255) cATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGt > 1:127325/1‑149 (MQ=255) tGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtc > 1:1158824/1‑149 (MQ=255) gATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtca > 1:5211968/1‑149 (MQ=255) tAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:4363310/1‑149 (MQ=255) tAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcatc > 1:2712834/1‑149 (MQ=255) aaaGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTcatcat > 1:3738475/1‑149 (MQ=255) aaaGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTcatcat > 1:3139088/1‑149 (MQ=255) aGCTTTAATAAACACATACGCCAGCGTATTGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtct < 1:337927/149‑1 (MQ=255) aGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtct > 2:2555347/1‑149 (MQ=255) gTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTg > 2:3896507/1‑149 (MQ=255) ttAATCAACAAATACGCCAGCTTATTGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGa < 1:404018/149‑1 (MQ=255) aaTCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAgg > 1:196519/1‑149 (MQ=255) aTCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGt > 1:2956789/1‑149 (MQ=255) cAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCa > 2:2676786/1‑149 (MQ=255) aaaCAAATACGCAAGCTAAATGGCGGAAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGAGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCa < 2:2793072/148‑1 (MQ=255) aaCACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCAt > 1:869340/1‑149 (MQ=255) acaTACGCCCGCGTAATGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg < 2:204982/149‑1 (MQ=255) caTACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc > 1:5177402/1‑149 (MQ=255) tACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcgg > 1:3306221/1‑149 (MQ=255) cGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGa > 1:2187152/1‑149 (MQ=255) gCCCGCGTAATGGCGTTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc < 2:2365805/149‑1 (MQ=255) gCCCGCGT‑ATGGGGGTAACACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc < 1:1675404/149‑1 (MQ=255) gCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc > 2:3546538/1‑149 (MQ=255) cccAGCGTATTGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc < 2:4257053/148‑1 (MQ=255) cAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGa < 2:3678453/149‑1 (MQ=255) cAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGa > 1:2538247/1‑149 (MQ=255) aGCGTATTGGCGTTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGAt < 2:2116004/149‑1 (MQ=255) gCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATa > 2:1530118/1‑149 (MQ=255) gTATTGGCGGTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAc < 1:4125935/149‑1 (MQ=255) gTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAc > 1:3630972/1‑149 (MQ=255) tAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcg > 1:5140467/1‑149 (MQ=255) cgttAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATaa < 1:800198/146‑1 (MQ=255) ggTAC‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAg < 1:2644452/149‑1 (MQ=255) gTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGc > 2:4660116/1‑149 (MQ=255) aa‑aCGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAt < 2:1933297/149‑1 (MQ=255) aa‑aCGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAt < 1:3932563/149‑1 (MQ=255) a‑aCGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATTAGCAtt < 2:5073813/149‑1 (MQ=255) a‑aCGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAtt > 2:3333632/1‑149 (MQ=255) a‑aCGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAtt > 1:674281/1‑149 (MQ=255) | TGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAA‑ACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATT > CP009273/681344‑681639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |