| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,380,297 | C→A | 6.5% | S177* (TCA→TAA) | ycjF → | UPF0283 family inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,380,297 | 0 | C | A | 6.5% | 848.3 / 7.3 | 248 | S177* (TCA→TAA) | ycjF | UPF0283 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (143/80); new base A (2/23); total (145/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.37e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 251 total aligned reads displayed.
CGCTTGCGACAGCGCGCCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGCTGGCGTTGGT > CP009273/1380149‑1380444 | cgcTTGCGACAGCGCGCCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTc < 1:1450264/149‑1 (MQ=255) gcTTGCGACAGCGCGCCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCa > 2:892507/1‑149 (MQ=255) gcgcgcCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGaaa > 1:5169180/1‑149 (MQ=255) gcgcgcCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGaaa < 2:3699798/149‑1 (MQ=255) gcgcgcCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGaaa > 1:3136476/1‑149 (MQ=255) cgcgcCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAAc < 1:1666960/149‑1 (MQ=255) cgcgcCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAAc < 1:5020332/149‑1 (MQ=255) gcgcCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACg < 1:3298354/149‑1 (MQ=255) cATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCaaaa < 2:1647076/149‑1 (MQ=255) aTGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAAc < 1:188546/149‑1 (MQ=255) gAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGa > 2:590857/1‑149 (MQ=255) gAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGa > 2:4082308/1‑149 (MQ=255) aaCGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGAc > 2:4785082/1‑149 (MQ=255) ccgcgACGAAGCGCGTTTTTTTTTGCATAGCCACGGCACGGGAAATGGCGGCGAATTTTGCGAAAAACTGGCGCAGATGGGGGGTTTTTATCTGTCGAATCGGGGGCTGAAAGGCTGGTATGCCTCAATCATTTAAACGCAAAACGAcc < 2:1397770/148‑1 (MQ=255) acgaAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGaa > 2:1147690/1‑149 (MQ=255) acgaAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGaa > 2:315758/1‑149 (MQ=255) acgaAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCAGGAAACGCAAAACGACCGTGaa > 2:5076501/1‑149 (MQ=255) gaAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGt > 2:2450793/1‑149 (MQ=255) aaGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTg > 1:2312681/1‑149 (MQ=255) gcgcGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGt > 1:2941043/1‑149 (MQ=255) cggttgttttATGCCATCGCCAGGGCCGGGGAAATGGCCGCGCTTTTGGCTAAAAACTGGCGCAGCTGGGGGTTTTTGATCAGTCGCATCCGGCGGTGCAACGCTGGTTTGCCACAATCAATGAAACGCAAAACGACCGTGAAGTGGTc < 2:3597593/142‑1 (MQ=255) gcgTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCa > 2:3409978/1‑149 (MQ=255) gTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGc > 1:1788197/1‑149 (MQ=255) tttATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGt > 2:2562891/1‑149 (MQ=255) aTTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATg > 2:3832065/1‑149 (MQ=255) aTTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATg > 2:3965986/1‑149 (MQ=255) ttGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATgc > 2:1337862/1‑149 (MQ=255) gCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGACGTGGTCAGCCTGTATgcgc > 2:366411/1‑149 (MQ=255) tcgCCACGGCAGGGGCAAAGGCCGCGATTTTTGCGAAAAACTGGCGCAGCTGGGGGGTTTTGATCTGTCGCATCCGGCGCTGCAACGCTGGTTTGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCAtt < 2:1617980/147‑1 (MQ=255) tAGCCACGGCACGGTCAACGGCCGCTAATTTTGCTAAAACGTGGCGCAGCTGGGGGGTATTGATCAGGCGCATCGGGCGCTGCAACGCTGTTATGCCTAAAACAATCAAACGAAACACGACCGTGAAGTGGTCAGCCTGTATGCGCAtt < 2:4870266/149‑1 (MQ=255) tAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCAtt > 1:4180092/1‑149 (MQ=255) aGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCAttt > 2:3363571/1‑149 (MQ=255) gCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTCTGCGCATTTg > 2:3081226/1‑149 (MQ=255) ggccggggCACTGGGCGCGCTTTTGGCGAAAATGTGGCGCAGCCGGGGGGTTTTGATCAGGCGCATCGGGCGCTGCACCGCGGGTATGCCTCAATCCATCAACCGCAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTcca < 2:4825830/144‑1 (MQ=255) cggGAAACGGCCGCGAATTGTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCGGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTccagcca < 2:2941043/149‑1 (MQ=255) gggCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTAAATCCACGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTccagccag > 2:4747680/1‑149 (MQ=255) ggCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGt > 2:916330/1‑149 (MQ=255) gCAACGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCAGCCGGCGCTGAACCGCTGGTATGCCTCAATCCATGAACCGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGtt < 2:5113184/149‑1 (MQ=255) cAACGGCCGCGAATTTTGCGAAAAACTGGCGCAGCTGGGGGGTTTTGATCAGTCGCATCCGGCGCTGCAACGCTGGTAGGCCACAATCAATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGttt < 2:2022436/149‑1 (MQ=255) aaatggCCGCGCATTTTGCGAAAAACGGGCGCAGCAGGCGGTTATTGATCAGTCGCATCCGGCGCTGCAACGGTGGTTTGCCTCAATCCATGAACCGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGttt < 2:3029418/145‑1 (MQ=255) aacggCCGCGATTTTTGCTAAAAACGGGCGCAGCTGGGGGTTTTTTATCTTTCGCATCCGGCGCTGAAACGTTTTTTTCCCACAAACCATCAAACCAAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGtttt < 1:2049543/146‑1 (MQ=255) aaGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTa > 1:772957/1‑149 (MQ=255) aGGCCGCGAATTTTGCTAAAAACGGGCGCAGCTGGGGGTTATTGATCTGCCGCACCCGGCGCTGCAACGCGGGTATGCCAAAAACCATCAACCCAAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAg < 1:871605/149‑1 (MQ=255) ggCCGCTCATTTTGCTAAAAACTGGCGCTGCAGGGGGTTTTTTAACAGTCGATTCGGGCGCTGCAACGCTGTTATGCCTAAATCAATTAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGa < 2:374736/149‑1 (MQ=255) gCCGCGATTTTTGCGAAAACCGGGCGCCGCCGGGGGTTTTTGATCCGGCGCAGCGGGCGCTGCCAGGGGGGTTGGCCCCAATCCATCAACCCAAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGAt < 2:2286050/149‑1 (MQ=255) gcgcATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGACGTGGTCAGCCGGTATGCGCATGTGGTCCAGCCAGTTTTAGATGcc > 2:2074506/1‑149 (MQ=255) gcATTTTGCTAAAACCTGGCGCAGCTGGGGGGTTTTGATCTGCCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCa < 2:5240438/149‑1 (MQ=255) gcATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCa > 2:555256/1‑149 (MQ=255) gAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAggcgcggcg > 2:2864548/1‑149 (MQ=255) aaaaCTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTCTGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGgcgcggcgcg > 1:3569860/1‑149 (MQ=255) aaaCTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGa > 2:636535/1‑149 (MQ=255) aaCTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGaa > 1:2634961/1‑149 (MQ=255) aaCTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGaa > 2:2985234/1‑149 (MQ=255) aaCTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGaa > 1:5349/1‑149 (MQ=255) ggggCGCAGCTGGGGGGTATTGATCTGTCGCATCCGGCGCTGCAAGGCGGGTATGCCTCAATCAATGAAACGCAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAAt < 2:698229/147‑1 (MQ=255) cgcAGCTGGCGGTTATTGATCAGTCGCATCCGGCGCTGCACCGCTGGTATGCCTCAATCCATGAAACGCAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGc < 2:4617108/149‑1 (MQ=255) gcagcaGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGcc > 2:2368523/1‑149 (MQ=255) cagctgGGGGTTATTGATCAGTCGCAGCCGGCGCTGCACCGCTGTTAGGCCACAATCCATCAACCGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCg < 1:4307284/149‑1 (MQ=255) agGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTcg > 2:400153/1‑149 (MQ=255) agGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTcg > 2:3315189/1‑149 (MQ=255) ggCGTGTATTGATCAGTCGCACCCGGCGCTGCACCGCTGGTATCCCACAATCAATTAAACCCAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTcgg < 1:1610170/149‑1 (MQ=255) ggCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTcgg > 2:4290207/1‑149 (MQ=255) ggCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTcgg > 2:2182163/1‑149 (MQ=255) gggTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTcggcgg > 2:3205863/1‑149 (MQ=255) tATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTcggcggcgg > 1:813096/1‑149 (MQ=255) aTTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGa > 2:4414018/1‑149 (MQ=255) aTTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGa > 2:1800561/1‑149 (MQ=255) tGATCTGTCGCATCGGGCGCTGCACCGGTGGTATCCAACAACCCAACAAACCAAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAAt < 1:1533621/149‑1 (MQ=255) tGATCTGTCGCATCCGGCGCTGCAACGCTGGTATGCCTAAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAAt < 2:4698043/149‑1 (MQ=255) tGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAAt < 2:2529300/149‑1 (MQ=255) gATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGACTc > 1:4630709/1‑149 (MQ=255) gATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGACTc > 2:2832449/1‑149 (MQ=255) aTCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCa > 2:2656599/1‑149 (MQ=255) tCAGTCGCATCGGGCGCTGCACCGGGGGTATGCCACAATCCATGAAACGAAACACGACCGTGAAGTGGTCAACCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCaa < 1:3409978/149‑1 (MQ=255) tCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCaa > 1:4128926/1‑149 (MQ=255) tCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCaa > 1:814643/1‑149 (MQ=255) aGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACg > 1:3494088/1‑149 (MQ=255) gTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGt > 1:3840023/1‑149 (MQ=255) gTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGt > 2:145639/1‑149 (MQ=255) tCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGtt > 2:1773133/1‑149 (MQ=255) tCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGtt > 2:2968303/1‑149 (MQ=255) cATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTtgat > 2:2146486/1‑149 (MQ=255) aTCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTtgatg > 1:2117294/1‑149 (MQ=255) tCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTtgatga < 2:2996122/149‑1 (MQ=255) gggCGCTGAAACGTTGTTATGCAACAATCAATTAACCCAAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGAtt < 1:969463/148‑1 (MQ=255) gcTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGACTCAACGTTGATGATTGCgg > 2:4522976/1‑149 (MQ=255) gcTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCgg > 2:2755068/1‑149 (MQ=255) gcTGCAACGCGGGTATGCAAAAACCAATTAAACGCAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCgg < 1:3663408/149‑1 (MQ=255) cTGCAACGGTGTTTTGCCAAAATCATTCAAACCCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGt < 1:1212906/149‑1 (MQ=255) cTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGt > 2:147337/1‑149 (MQ=255) tGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTc > 1:4878986/1‑149 (MQ=255) aaCGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGACTCAACGTTGATGATTGCGGTCAGc > 1:1463821/1‑149 (MQ=255) aCGCTGTTATGCAACAATCAATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGcc < 1:1073123/149‑1 (MQ=255) cggtGGTATGCCTAAATCCATCAAACCCAACACGACCGTGTAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGccc < 2:1049074/146‑1 (MQ=255) cTGGTCGGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGc < 2:4692660/149‑1 (MQ=255) tATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGCTGGc > 1:2280458/1‑149 (MQ=255) aggCCACAATCCATCAAACCAAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGCTGGCg < 1:1970612/147‑1 (MQ=255) gCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGCTGGCGtt > 2:930902/1‑149 (MQ=255) cTCAATCCATGAAACGCAACACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGCTGGCGTTgg < 2:933169/149‑1 (MQ=255) tCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGCTGGCGTTGGt < 2:4206734/149‑1 (MQ=255) | CGCTTGCGACAGCGCGCCCATGAACGCGACGAAGCGCGTGATTTATTGCATAGCCACGGCACGGGCAAAGGCCGCGCATTTTGCGAAAAACTGGCGCAGCAGGCGGGTATTGATCAGTCGCATCCGGCGCTGCAACGCTGGTATGCCTCAATCCATGAAACGCAAAACGACCGTGAAGTGGTCAGCCTGTATGCGCATTTGGTCCAGCCAGTTTTAGATGCCCAGGCGCGGCGCGAAATCAGCCGTTCGGCGGCGGAATCAACGTTGATGATTGCGGTCAGCCCGCTGGCGTTGGT > CP009273/1380149‑1380444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |