| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,655,839 | A→T | 8.0% | intergenic (‑349/+103) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,655,839 | 0 | A | T | 8.0% | 628.3 / 6.3 | 226 | intergenic (‑349/+103) | iscR/trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (145/54); new base T (2/20); total (148/78) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.75e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 234 total aligned reads displayed.
ATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCA > CP009273/2655691‑2655985 | atCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGATGTCGCATGCGGCGTGAACGCCTTATCCGACCTAAGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCa > 1:2417887/1‑149 (MQ=255) tCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCTTCGCATCAGGCAA‑CGGATGTCGTATGCGCCGTGAACGCCTAATCAGACCTACCTTTCTGTTCACAGTAGCCCTCATAATAAGCATTACACGACGAATCAg > 1:4234176/1‑149 (MQ=14) tCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg > 1:3391562/1‑149 (MQ=39) tCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg > 1:4597300/1‑149 (MQ=39) ccGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGAAGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAgg > 2:4603315/1‑149 (MQ=255) ccTGGGGTTCGGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCAGCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAAc < 2:3777470/149‑1 (MQ=25) cTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACg > 1:1722001/1‑149 (MQ=35) ggggTTGTGTACAAGGTAGGCCTTATAAGACGCTTTACGCGGCGCATCCGGCAA‑CGGCTGGCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTTTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGc < 2:4920586/149‑1 (MQ=11) gggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCACCGGCt > 1:3656790/1‑149 (MQ=17) ggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCTGGCAACGGCTg > 2:1138540/1‑149 (MQ=17) ggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTg > 2:3756251/1‑149 (MQ=32) gTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGAAGCGGCGTGAACGCCTTATCAGAGCAACGGTTCTGTTCACTGTAGGCCGGATAAGACGCATTTCGCGTCGCTTCGGGCAACGGCTGt > 2:2158262/1‑149 (MQ=11) tACTCTGTTGGCCTTATACGACGCTTTTCGCGTCGGCTCTGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCATTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg < 2:1620369/149‑1 (MQ=11) tACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg > 1:1955579/1‑149 (MQ=35) acacTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCACCGGCTGTCGGATgc > 1:1109730/1‑149 (MQ=25) acacTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGAGgc > 1:4117391/1‑149 (MQ=18) tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg > 1:1884893/1‑149 (MQ=38) gtGATAATACGAATTACGGGGCGCATCCGGCAA‑GGGCGGTCGGTTGCGGCGTGAACGCCTTAACCGACCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTCCGCGTCGCAACAGGCAACGGCTGTCGGATGCGGCGTGAACGc < 2:5080083/148‑1 (MQ=14) cTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGc > 1:4523467/1‑149 (MQ=255) ttatatGACGCTGTCCGCGTCGCCTCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTCCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGcc < 2:5185511/147‑1 (MQ=14) gATACGCCGCTTAACGGGGCGCAACTGGAAA‑CGGGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGCCCTGATAAGACGCATTACGCGTCGCATCAGCCAACGGCTGTCGGATGCGGCGTGAACGCCt < 2:1950819/149‑1 (MQ=14) tAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGACCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTa > 2:2957955/1‑149 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATc > 2:4944378/1‑149 (MQ=255) gCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCACCGGCTGTCGGAGGCGGCGTGAACGCCTTATCCGAc > 2:4805380/1‑149 (MQ=255) gCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAc > 1:4392960/1‑149 (MQ=255) tttACGGGGCGCATATGCCAA‑CGGCTGTCGGATGCGGCGTGACCGCCTTATCCGACCTTGGGTTCTGTTCACTGTAGGCCTGATACGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCt < 2:4067122/148‑1 (MQ=14) aTTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCATTATCCGACCAACGGTTCTGTTCACTGTAGGCCTGATAAGACGAATTACGCGTCGCATATGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCt < 2:793841/149‑1 (MQ=17) cctcccATCCGCCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTTCTGTTCACTGTAGGCCTGATAAGACGAATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGtt < 2:1464134/144‑1 (MQ=17) ggggCATCTGGCAA‑CGGCTGTCGGATGCGGGGTGAACGCCTTATCCGACCTCGGGTTCTGTGCACTGTCGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTc < 2:3157605/146‑1 (MQ=14) ggcGCATC‑GGCAACCGGCTGTCGGATGCGGCGTCACCGCATTATCCGACCTAGGGTTCTGTTCAGTGTCGGCCTGATAAGCCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTc < 1:4291065/147‑1 (MQ=14) gTCGCATTTGGAAA‑CGGCTGTCGGATGCGGCGTGAACGCATTATCCGCCCTACGGTTCTGTTCACTGTTGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTc < 2:5132201/149‑1 (MQ=14) ggcttctggCAA‑CGGCTGTCGGATGCGGGGTGAACGCCTTAGCCGACCTCCGGTTCTGTTCACTGTAGGCCTGATACGCCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTg < 2:4620259/142‑1 (MQ=14) cGCAGCTGGCAC‑GGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCAGTGTAGGCCTGATACGCCGCTTTACGCGGCGCCACAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTg < 2:4620389/149‑1 (MQ=14) cATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGtt > 2:4400357/1‑149 (MQ=255) tCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCa > 2:2372376/1‑149 (MQ=255) cAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCCGAAGCGGCGTGAACGACTAATCCGACCCACGGTTCAGTCCag > 2:4676737/1‑148 (MQ=14) tggaaa‑CGGCTGTCGGATGCGGCGTGAACGCCTTAGCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACt < 2:3022055/145‑1 (MQ=255) ggCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTg > 2:4249185/1‑149 (MQ=255) aa‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg > 2:3287116/1‑149 (MQ=255) aa‑CGGCTGTCGGAGGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTGCACTGTAGGCCTGATATGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg < 2:5077205/149‑1 (MQ=255) accGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg < 2:254750/147‑1 (MQ=255) a‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATTCGGCGTGAACGCCTTATCCGACCAACGGTTCTGTTCACTGTAgg > 1:464636/1‑149 (MQ=255) ggCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGcc > 2:2433038/1‑149 (MQ=255) gCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAATGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCt < 2:590712/149‑1 (MQ=255) ttggggggTGAACGCATTATCCGACCTTGGGTTGTGTTCACTTTAGGCCTGATAGGACGCATTACGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGAc < 2:13588/142‑1 (MQ=11) cggggTTAACGCCTTATCCGACCTTCGTTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCa < 2:896067/149‑1 (MQ=255) cggcggGAACGCCTTATCCGCCCTCCGGTTCTGTTCACTGTAGGCCTGATAAGACGAATTACGCGTCGCCTCTGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCa < 2:3207362/149‑1 (MQ=11) cggcgTGACCGCCTTAACCTACATCGGTTTTTTTTCACTTTAGGCCTGATAAGACGCATTACGGGTCGAATCTGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCa < 2:18973/149‑1 (MQ=11) cggcgTGAACGCCTTATCCGACCTGCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCa < 2:4739367/149‑1 (MQ=37) ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCAt > 1:2709815/1‑149 (MQ=255) ggcgTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTACGCCTGATAAGACGCAt > 1:2709639/1‑149 (MQ=255) cgTGAACCCCTAATCCGACCTAGGGTTCTGTACACTGTAGGCCTGATACGACGCATTACGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTa < 2:938142/149‑1 (MQ=11) gTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTAc > 1:3871461/1‑149 (MQ=255) gTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGAGAAGACGCATTAc > 1:2016935/1‑149 (MQ=255) ttATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCAt > 1:1243510/1‑149 (MQ=40) tATCCGACCTTGGGTTCTGTTCACTTTTGGCCTTTTAAGACGATTTCCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATc < 1:1727606/149‑1 (MQ=11) tCCGACCTACGGTTGTGTTCACTGTAGGCCTGATATGACGAATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg < 2:5070707/149‑1 (MQ=255) tCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg > 2:3785691/1‑149 (MQ=39) cccGACCTTCGGTTCTGTTCACTTTAGGCCTGATACGACGCATTACGCGTCGCATCTGGAAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAg < 1:1285195/148‑1 (MQ=11) ccGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAgg > 1:4169329/1‑149 (MQ=39) gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGGCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCa < 2:1276716/149‑1 (MQ=38) cccTTCGGTTCTGGTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCaa < 2:3430605/148‑1 (MQ=18) aCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCaa > 2:1722113/1‑149 (MQ=37) cTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACg > 1:2369607/1‑149 (MQ=35) cTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGACTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCAATACGCGTCGAATCAGGCAACg > 1:1777673/1‑149 (MQ=255) aCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGc > 1:3183641/1‑149 (MQ=33) cGGTTGTGTTCTCTGTAGGCGTGATAAGACGCTTTACGCGTCGCATCTGGAAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 2:4742110/149‑1 (MQ=11) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt > 1:348664/1‑149 (MQ=32) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt > 1:3349206/1‑149 (MQ=32) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGtt > 1:1194345/1‑149 (MQ=32) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCGGtt > 1:760513/1‑149 (MQ=17) gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc > 1:4017675/1‑149 (MQ=35) ttCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg > 2:73151/1‑149 (MQ=35) aCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTACACTGTCGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGcc > 2:4425132/1‑149 (MQ=255) tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt > 2:1104959/1‑149 (MQ=38) gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg > 1:4767279/1‑149 (MQ=39) gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg > 2:3484559/1‑149 (MQ=39) gTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTg > 1:2366167/1‑149 (MQ=39) aGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGtt > 1:307922/1‑149 (MQ=40) gCCTGACAACCCGCATTAGGGGGCGCTTCCGCCACCGGGTGGGGGTGGCGGCGTCACCGCCTTAACCGACCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATAACGCGTCCCATCAGCCAACGGCTGTTATTCGGCCTTGTTAc < 2:4071461/149‑1 (MQ=9) cTGATACGACGAATTCCGCGTCGCCTCAGGCAACGGCTGTCGGATGCGGCGTGACCGCCTTATCCGACCTCCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCt < 2:2936550/149‑1 (MQ=14) tGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtt > 1:7786/1‑149 (MQ=255) tGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCtg > 2:962401/1‑148 (MQ=255) aTAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTa > 1:1389424/1‑149 (MQ=255) tAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAt > 1:98289/1‑149 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc > 1:1041648/1‑149 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTc > 1:4870458/1‑149 (MQ=255) aCGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctg > 2:417718/1‑149 (MQ=255) tattcccgcgTCGCAACAGGAAACGGCTGTCGGTTGCGGCGTGAACCCCTTAACCGCCCTCCGGTTCTGTTCACTGTAGGCCTGATAAGACGAATTACGCGTCGCAACAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTctgct < 2:2897382/143‑1 (MQ=17) gCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTAATCAGCACTACGGTACTGTTCACTGTAGGCCTGATAAGACTCAAAACGAGGCGCAGCAGGCACCCGCGGTTATACTGCCGTGTAACCTTTAtaatcct > 1:540540/1‑143 (MQ=2) cATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCGACGGTTCTGTTCACTGTCGGCCGGAGAAGACGCAATACGCGTCGCATCAGGCCACGGCGGTTATACGGCCGTGTGACCTTTATGctgctg > 1:2814517/1‑149 (MQ=14) tttcggggTCGCAGCGGGCAAGGGGGGTCGGATGCGGCGTGAACGCATTATCCGACCTAGGTTTGTGTTCAGTGTTGGCCTGATATGACGCTTTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCtgctgc < 1:2979874/142‑1 (MQ=17) aTTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCtgctgc > 1:4668081/1‑149 (MQ=255) ttACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGCCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTgctgct > 1:2615497/1‑149 (MQ=255) tACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTc > 2:2280085/1‑149 (MQ=255) aCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCa > 2:2078699/1‑149 (MQ=255) gcgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAAt > 1:366894/1‑149 (MQ=255) gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAg > 2:2654111/1‑149 (MQ=255) tCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAATCCa > 1:2197227/1‑149 (MQ=255) tCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCa > 1:2604319/1‑149 (MQ=255) | ATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAA‑CGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCAATAGAAGCCA > CP009273/2655691‑2655985 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |