| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,371,372 | G→T | 48.7% | I65I (ATC→ATA) | rpsI ← | 30S ribosomal subunit protein S9 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,371,372 | 0 | G | T | 48.7% | 98.8 / inf | 252 | I65I (ATC→ATA) | rpsI | 30S ribosomal subunit protein S9 |
| Reads supporting (aligned to +/- strand): ref base G (78/51); new base T (60/63); total (138/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.63e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 252 total aligned reads displayed.
TTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAG > CP009273/3371226‑3371517 | ttACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTAt < 1:4864703/149‑1 (MQ=255)ttACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTAt < 1:3137213/149‑1 (MQ=255) tACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATg > 2:784619/1‑149 (MQ=255) gTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTAc < 1:1198356/149‑1 (MQ=255) ttCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACa > 2:1701563/1‑149 (MQ=255) ttCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACa < 1:355612/149‑1 (MQ=255) tCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAg < 1:1455278/149‑1 (MQ=255) tCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAg < 2:375957/149‑1 (MQ=255) tCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAg < 1:503874/149‑1 (MQ=255) tCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAg < 1:3843033/149‑1 (MQ=255) aCCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTc < 2:1322182/149‑1 (MQ=255) ccTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTcc < 2:5180110/149‑1 (MQ=255) ccTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTcc < 2:2823317/149‑1 (MQ=255) cTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCa > 1:1090531/1‑149 (MQ=255) tGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAg < 2:958749/149‑1 (MQ=255) cGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGttt > 1:2879211/1‑149 (MQ=255) gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTtc < 2:312086/149‑1 (MQ=255) aGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct < 1:5246101/149‑1 (MQ=255) cACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAAcc > 2:325241/1‑149 (MQ=255) cACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAAcc < 2:1661655/149‑1 (MQ=255) cACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAAcc < 2:4254762/149‑1 (MQ=255) aCGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCa < 2:3714902/149‑1 (MQ=255) aGTAACGAAGCCAGCTTTACGCAGTTCAGACCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGt < 1:1799055/149‑1 (MQ=255) tAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCg > 2:2864468/1‑149 (MQ=255) aaCGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGa > 2:238128/1‑149 (MQ=255) aCGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGAc > 2:1437400/1‑149 (MQ=255) aCGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGAc > 2:5000480/1‑149 (MQ=255) cGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGAcc < 2:3853774/149‑1 (MQ=255) aaGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAg > 2:4785059/1‑149 (MQ=255) aaGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAg > 2:4888473/1‑149 (MQ=255) gCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAg > 1:2664801/1‑149 (MQ=255) cTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGc > 1:2348171/1‑149 (MQ=255) cTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGc > 2:2196056/1‑149 (MQ=255) aCGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTATCTCAACCATGTCGACCAGTTCCAGCGGCt < 2:737559/149‑1 (MQ=255) aCGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCt > 1:2151144/1‑149 (MQ=255) tCAGAACGCAGGGACTCGTCGTAGTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCATAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAAc < 1:5137388/149‑1 (MQ=255) aGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTa > 1:2381440/1‑149 (MQ=255) gAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTAc < 1:4165966/149‑1 (MQ=255) gAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTAc > 1:4294365/1‑149 (MQ=255) gAACGCAGGGACTCGTCGTATTCCATCAGAGCACGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTAc > 1:2196919/1‑149 (MQ=255) aCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCa > 2:2264306/1‑149 (MQ=255) aCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCa > 2:1365130/1‑149 (MQ=255) aCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCa > 2:4906574/1‑149 (MQ=255) aCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCa > 1:5207701/1‑149 (MQ=255) cGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCAt < 1:1865600/149‑1 (MQ=255) gCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATg < 2:705430/149‑1 (MQ=255) gCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATg < 2:705679/149‑1 (MQ=255) gggACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCgg < 2:5154553/149‑1 (MQ=255) gggACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCgg > 2:4532575/1‑149 (MQ=255) gggACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCgg > 1:543489/1‑149 (MQ=255) gggACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCgg > 1:452860/1‑149 (MQ=255) aCTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCa > 1:3259724/1‑149 (MQ=255) cTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAg > 2:3559623/1‑149 (MQ=255) tcgtcgTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGt > 2:3487347/1‑149 (MQ=255) tcgtcgTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGt > 2:4372860/1‑149 (MQ=255) tcgtcgTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGt > 2:5212883/1‑149 (MQ=255) cgtcgtATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGtt < 2:5250282/149‑1 (MQ=255) tATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACg > 2:4029582/1‑149 (MQ=255) tCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGAcc > 1:3348629/1‑149 (MQ=255) ccATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCg > 1:2815308/1‑149 (MQ=255) aTCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGaa > 2:4673601/1‑149 (MQ=255) cgcgGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGt < 2:3176623/149‑1 (MQ=255) cgGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTc < 2:3982373/149‑1 (MQ=255) cgGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTc < 2:1513263/149‑1 (MQ=255) ggTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCa > 1:5211748/1‑149 (MQ=255) tGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCaga < 2:1819306/149‑1 (MQ=255) aCCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAAc < 1:923920/149‑1 (MQ=255) aCCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTGTCACGACCGAAGAACTGTTCCAGAGAAc > 2:2650612/1‑149 (MQ=255) gTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgtt > 1:718917/1‑149 (MQ=255) gTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgtt > 1:2570696/1‑149 (MQ=255) gTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgtt < 1:1701563/149‑1 (MQ=255) tGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttg < 1:296500/149‑1 (MQ=255) tGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttg > 1:4134957/1‑149 (MQ=255) gACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCATGACCGAAGTACTGTTCCAGAGAACgttgg > 1:3964312/1‑149 (MQ=255) gACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttgg < 2:766514/149‑1 (MQ=255) gACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCAGGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttgg < 2:2595616/149‑1 (MQ=255) aCGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggt < 2:4310041/149‑1 (MQ=255) aCGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggt < 1:2561724/149‑1 (MQ=255) cGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggtt < 1:1920328/149‑1 (MQ=255) tCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGACCGTTGGGTGAtg > 1:913861/1‑148 (MQ=255) cGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTa > 2:1650206/1‑149 (MQ=255) gCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTAc > 2:428625/1‑149 (MQ=255) gCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTAc > 2:540131/1‑149 (MQ=255) gCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTAc < 1:1892710/149‑1 (MQ=255) ccAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAt < 1:1548598/149‑1 (MQ=255) gCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAtttt > 2:1611009/1‑149 (MQ=255) ccTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTa < 1:1753550/149‑1 (MQ=255) cTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAc < 2:4159434/149‑1 (MQ=255) cTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAc < 2:3226860/149‑1 (MQ=255) tGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAcc < 2:3384924/149‑1 (MQ=255) ccAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGtt > 2:106525/1‑149 (MQ=255) gagaTACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGcc < 1:4942820/149‑1 (MQ=255) agaTACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGccc < 1:3908953/149‑1 (MQ=255) tACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGt > 2:1525911/1‑149 (MQ=255) caccaccTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTtg < 1:848942/149‑1 (MQ=255) caccTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGGTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTtgatg < 2:883949/149‑1 (MQ=255) ccTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGaa > 1:2917050/1‑149 (MQ=255) ttAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAc < 1:443608/149‑1 (MQ=255) ttAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAc < 2:2529910/149‑1 (MQ=255) aCGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAcgcg > 2:3076090/1‑149 (MQ=255) | TTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAG > CP009273/3371226‑3371517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |